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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0175400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Ankyrin repeat containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.86 (0.029) R2 : 0.764
β1 : 2.09 (0.106) R2dD : 0.208 R2D : 0.148
β2 : 2.4 (0.0811) R2dC : 0.574 R2C : 0.406
β3 : 1.09 (0.13) R2dE : 0.05 R2E : -0.113
β4 : 4.81 (0.3) R2dD*C : 0.134 R2D*C : 0.091
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.495 (0.063) R2dN8 : 0.044 R2N8 : -0.0177
σ : 0.54
deviance : 134.56
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_____
C
peak time of C : 20.7
E
wheather : humidity
threshold : 67
memory length : 1036
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
134.63 0.545 3.86 2.01 2.43 1.14 4.96 0.553 0.489 20.7 71.19 1009 -- --
134.56 0.54 3.86 2.09 2.4 1.09 4.81 -- 0.495 20.7 67 1036 -- --
191.49 0.644 3.84 2.18 2.51 0.935 -- -3.09 0.514 20.3 68 797 -- --
209.47 0.674 3.86 1.94 2.33 1.03 -- -- 0.491 20.5 67.97 1100 -- --
458.44 0.997 3.81 2.01 -- 1.32 -- -0.924 0.49 -- 75 1438 -- --
154.57 0.583 3.88 2.07 2.12 -- 4.73 -- 0.38 20.4 -- -- -- --
223.93 0.701 3.88 1.93 2.13 -- -- -- 0.385 20.2 -- -- -- --
455.28 0.994 3.79 1.89 -- 1.05 -- -- 0.479 -- 69.24 1414 -- --
299.24 0.806 3.89 -- 2.3 1.08 -- -- 0.344 20.3 81 2288 -- --
472.72 1.02 3.82 1.91 -- -- -- -- 0.36 -- -- -- -- --
321.87 0.839 3.92 -- 2.12 -- -- -- 0.17 20.2 -- -- -- --
543.74 1.09 3.83 -- -- 1.32 -- -- 0.333 -- 81 1424 -- --
568.99 1.11 3.87 -- -- -- -- -- 0.148 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 127.20 humidity 90 720 > th dose dependent rect. 19 5
12 128.55 humidity 90 720 > th dose dependent rect. 10 15
42 130.40 humidity 90 720 > th dose dependent sin 18 NA
46 130.72 humidity 90 720 > th dose independent rect. 19 5
56 131.42 humidity 90 720 < th dose independent rect. 17 7
94 132.63 humidity 90 720 < th dose dependent rect. 17 7
114 133.09 humidity 80 720 < th dose independent rect. 17 3
121 133.34 humidity 90 720 > th dose independent rect. 10 14
129 133.44 humidity 90 720 < th dose independent rect. 10 14
295 134.96 humidity 90 720 < th dose dependent sin 14 NA
322 135.21 humidity 90 720 > th dose independent sin 17 NA
332 135.34 humidity 60 720 > th dose dependent rect. 15 17
358 135.53 temperature 25 720 > th dose dependent rect. 21 1
431 136.04 humidity 90 720 < th dose independent sin 17 NA
554 136.84 humidity 90 720 > th dose independent rect. 5 19
555 136.84 humidity 90 720 < th dose dependent rect. 21 1
623 137.13 humidity 80 720 > th dose independent rect. 17 2
639 137.19 humidity 80 1440 < th dose independent rect. 6 12
647 137.22 humidity 80 1440 < th dose independent rect. 7 9
717 137.45 humidity 80 1440 > th dose independent rect. 6 12
731 137.53 humidity 80 1440 > th dose independent rect. 6 10
776 137.67 temperature 25 720 > th dose dependent rect. 18 10
797 137.72 humidity 80 1440 < th dose independent sin 1 NA
888 137.99 temperature 25 720 > th dose independent rect. 21 1
904 138.03 humidity 80 1440 > th dose independent sin 1 NA