Os09g0123500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Tetratricopeptide-like helical domain containing protein.
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Os09g0123500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Tetratricopeptide-like helical domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 59.62 | 0.363 | 10.8 | -1.69 | 0.563 | 0.861 | 0.19 | -0.809 | -0.535 | 19.2 | 19.7 | 2503 | -- | -- |
| 60.77 | 0.363 | 10.7 | -1.58 | 0.553 | 1.02 | 0.152 | -- | -0.511 | 19.1 | 19.6 | 2534 | -- | -- |
| 59.69 | 0.36 | 10.8 | -1.71 | 0.567 | 0.856 | -- | -0.846 | -0.544 | 19.2 | 19.87 | 2549 | -- | -- |
| 60.81 | 0.363 | 10.7 | -1.58 | 0.568 | 1.02 | -- | -- | -0.511 | 19.2 | 19.73 | 2562 | -- | -- |
| 75.97 | 0.406 | 10.8 | -1.71 | -- | 0.881 | -- | -0.909 | -0.561 | -- | 20.2 | 2310 | -- | -- |
| 80.91 | 0.422 | 10.7 | -1.04 | 0.565 | -- | 0.21 | -- | -0.27 | 19.6 | -- | -- | -- | -- |
| 81.04 | 0.422 | 10.7 | -1.05 | 0.565 | -- | -- | -- | -0.27 | 19.6 | -- | -- | -- | -- |
| 76.89 | 0.408 | 10.7 | -1.56 | -- | 1.08 | -- | -- | -0.503 | -- | 19.36 | 2259 | -- | -- |
| 105.99 | 0.48 | 10.7 | -- | 0.563 | 0.368 | -- | -- | -0.223 | 19.2 | 20.53 | 1096 | -- | -- |
| 98.21 | 0.463 | 10.7 | -1.06 | -- | -- | -- | -- | -0.278 | -- | -- | -- | -- | -- |
| 109.98 | 0.491 | 10.7 | -- | 0.574 | -- | -- | -- | -0.153 | 19.5 | -- | -- | -- | -- |
| 115.64 | 0.501 | 10.6 | -- | -- | -0.531 | -- | -- | -0.0175 | -- | 19.38 | 47520 | -- | -- |
| 127.61 | 0.527 | 10.6 | -- | -- | -- | -- | -- | -0.161 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 58.60 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 7 |
| 3 | 58.65 | temperature | 20 | 1440 | > th | dose independent | rect. | 24 | 8 |
| 5 | 58.67 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 10 |
| 7 | 58.70 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 10 |
| 56 | 59.17 | temperature | 20 | 1440 | > th | dose independent | sin | 8 | NA |
| 62 | 59.24 | temperature | 20 | 1440 | < th | dose independent | sin | 8 | NA |
| 63 | 59.24 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 118 | 59.64 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 141 | 59.76 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 3 |
| 145 | 59.80 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 3 |
| 149 | 59.83 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 155 | 59.85 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 323 | 60.69 | temperature | 20 | 720 | > th | dose independent | rect. | 22 | 21 |
| 593 | 61.72 | wind | 3 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 671 | 61.94 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 677 | 61.97 | temperature | 20 | 4320 | < th | dose independent | rect. | 19 | 4 |
| 688 | 62.00 | wind | 3 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 714 | 62.08 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 741 | 62.14 | wind | 3 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 760 | 62.18 | temperature | 20 | 4320 | < th | dose independent | sin | 16 | NA |
| 782 | 62.24 | wind | 3 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 789 | 62.27 | temperature | 20 | 4320 | > th | dose independent | sin | 16 | NA |
| 830 | 62.37 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 831 | 62.37 | wind | 1 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 871 | 62.47 | wind | 5 | 43200 | > th | dose dependent | rect. | 8 | 1 |
| 880 | 62.50 | wind | 3 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 890 | 62.53 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 947 | 62.65 | wind | 9 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 962 | 62.70 | wind | 3 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 967 | 62.71 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 2 | 12 |
| 986 | 62.75 | wind | 3 | 43200 | > th | dose independent | rect. | 23 | 3 |
| 996 | 62.75 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 22 | 16 |