Os12g0634900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Tetratricopeptide-like helical domain containing protein.
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Os12g0634900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Tetratricopeptide-like helical domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 138.91 | 0.554 | 3.44 | 1.62 | 0.317 | -1.01 | 0.848 | -4.48 | 0.152 | 12.8 | 4.933 | 7936 | -- | -- |
| 153.31 | 0.577 | 3.6 | 1.69 | 0.319 | -0.36 | 0.964 | -- | -0.0592 | 12.4 | 5.373 | 3809 | -- | -- |
| 141.88 | 0.555 | 3.44 | 1.63 | 0.324 | -1 | -- | -4.53 | 0.148 | 12.4 | 4.9 | 7969 | -- | -- |
| 156.15 | 0.586 | 3.59 | 1.78 | 0.425 | -0.248 | -- | -- | -0.0228 | 12.9 | 4.9 | 7969 | -- | -- |
| 147.8 | 0.566 | 3.44 | 1.61 | -- | -1.11 | -- | -4.7 | 0.15 | -- | 4.877 | 8011 | -- | -- |
| 155.1 | 0.584 | 3.59 | 1.81 | 0.354 | -- | 0.904 | -- | -0.0207 | 12.3 | -- | -- | -- | -- |
| 158.62 | 0.59 | 3.58 | 1.84 | 0.351 | -- | -- | -- | -0.0167 | 12.1 | -- | -- | -- | -- |
| 164.67 | 0.598 | 3.58 | 1.71 | -- | -0.349 | -- | -- | 0.0132 | -- | 5.404 | 7978 | -- | -- |
| 193.33 | 0.648 | 3.69 | -- | 0.364 | -1.2 | -- | -- | -0.483 | 12.1 | 7.421 | 47520 | -- | -- |
| 166.37 | 0.603 | 3.59 | 1.83 | -- | -- | -- | -- | -0.0218 | -- | -- | -- | -- | -- |
| 248.15 | 0.737 | 3.63 | -- | 0.327 | -- | -- | -- | -0.222 | 11.8 | -- | -- | -- | -- |
| 199.24 | 0.657 | 3.69 | -- | -- | -1.44 | -- | -- | -0.47 | -- | 7.4 | 39678 | -- | -- |
| 254.89 | 0.745 | 3.64 | -- | -- | -- | -- | -- | -0.225 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 133.92 | wind | 5 | 14400 | < th | dose independent | rect. | 11 | 7 |
| 2 | 133.96 | wind | 5 | 14400 | > th | dose independent | rect. | 11 | 7 |
| 3 | 133.99 | wind | 9 | 43200 | > th | dose independent | rect. | 16 | 3 |
| 5 | 134.09 | wind | 9 | 43200 | < th | dose independent | rect. | 16 | 3 |
| 10 | 134.16 | wind | 5 | 14400 | > th | dose independent | rect. | 12 | 4 |
| 28 | 134.53 | wind | 7 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 41 | 134.67 | wind | 5 | 43200 | > th | dose dependent | rect. | 14 | 1 |
| 42 | 134.74 | wind | 7 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 51 | 134.93 | wind | 7 | 43200 | > th | dose dependent | rect. | 16 | 3 |
| 69 | 135.19 | wind | 3 | 14400 | > th | dose dependent | rect. | 11 | 4 |
| 81 | 135.38 | wind | 3 | 14400 | > th | dose dependent | rect. | 10 | 8 |
| 117 | 135.72 | wind | 7 | 43200 | < th | dose independent | rect. | 14 | 15 |
| 127 | 135.79 | wind | 5 | 14400 | < th | dose independent | sin | 21 | NA |
| 139 | 135.84 | wind | 7 | 43200 | > th | dose independent | rect. | 14 | 15 |
| 147 | 135.91 | wind | 5 | 14400 | > th | dose independent | sin | 21 | NA |
| 165 | 135.98 | wind | 7 | 43200 | > th | dose dependent | rect. | 14 | 6 |
| 254 | 136.21 | wind | 7 | 14400 | < th | dose dependent | rect. | 11 | 4 |
| 296 | 136.33 | wind | 5 | 43200 | > th | dose dependent | rect. | 13 | 16 |
| 335 | 136.43 | wind | 7 | 43200 | < th | dose independent | sin | 17 | NA |
| 409 | 136.55 | wind | 7 | 43200 | > th | dose independent | sin | 17 | NA |
| 411 | 136.55 | wind | 7 | 43200 | > th | dose independent | rect. | 16 | 7 |
| 428 | 136.57 | wind | 7 | 43200 | > th | dose independent | rect. | 16 | 10 |
| 433 | 136.58 | wind | 7 | 43200 | < th | dose independent | rect. | 16 | 10 |
| 453 | 136.61 | wind | 7 | 43200 | < th | dose independent | rect. | 16 | 7 |
| 616 | 136.80 | wind | 7 | 14400 | < th | dose dependent | rect. | 12 | 2 |
| 689 | 136.89 | wind | 5 | 43200 | > th | dose dependent | sin | 17 | NA |
| 708 | 136.92 | wind | 3 | 14400 | > th | dose dependent | sin | 21 | NA |
| 848 | 137.08 | wind | 7 | 43200 | > th | dose dependent | rect. | 16 | 7 |
| 928 | 137.16 | wind | 9 | 14400 | < th | dose dependent | rect. | 10 | 8 |