Os12g0599900 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0599900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Tetratricopeptide region domain containing protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	5.46	(0.0311)	R²	:	0.744
β₁	:	1.14	(0.116)	R²_dD	:	0.0592	R²_D	:	0.0631
β₂	:	1.63	(0.0754)	R²_dC	:	0.268	R²_C	:	0.271
β₃	:	2.68	(0.128)	R²_dE	:	0.259	R²_E	:	0.343
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	0.835	(0.0666)	R²_dN8	:	0.114	R²_N8	:	0.0832
σ	:	0.579
deviance	:	154.74
__

_____

C
peak time of C	:	21.9
E
wheather	:	temperature
threshold	:	5.892
memory length	:	109
response mode	:	> th
dose dependency	:	dose dependent
G
type of G	:	rect.
peak or start time of G	:	6.78
open length of G	:	22.9

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
153.61	0.582	5.44	1.23	1.66	2.65	-0.428	0.93	0.844	21.8	8.402	106	6.85	22.8
154.23	0.578	5.45	1.19	1.63	2.72	-0.426	--	0.834	21.9	7.092	108	6.87	22.8
153.97	0.578	5.43	1.28	1.66	2.74	--	1.18	0.864	21.9	6.505	106	6.85	22.8
154.74	0.579	5.46	1.14	1.63	2.68	--	--	0.835	21.9	5.892	109	6.78	22.9
206.66	0.67	5.48	0.917	--	3.6	--	0.168	0.472	--	2.547	570	6.03	21.5
248.67	0.739	5.43	1.64	2.06	--	-0.924	--	1.01	19.9	--	--	--	--
251.17	0.742	5.43	1.66	2.06	--	--	--	1.01	20	--	--	--	--
187.37	0.638	5.44	1.21	--	3.1	--	--	0.838	--	9.747	567	7.02	18
186.14	0.635	5.49	--	1.64	3.02	--	--	0.685	22.1	5.678	115	6.73	23
482.07	1.03	5.37	1.64	--	--	--	--	0.983	--	--	--	--	--
324.13	0.842	5.47	--	2.05	--	--	--	0.824	20	--	--	--	--
217.97	0.688	5.47	--	--	3.4	--	--	0.57	--	11.96	568	7.03	18
553.26	1.1	5.42	--	--	--	--	--	0.8	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	157.80	temperature	10	90	> th	dose dependent	rect.	7	23
2	161.20	temperature	15	10	> th	dose dependent	rect.	8	22
4	161.91	temperature	15	90	> th	dose dependent	rect.	8	21
17	166.57	temperature	30	30	< th	dose dependent	rect.	5	23
28	168.64	temperature	30	270	< th	dose dependent	rect.	11	21
29	169.10	temperature	25	720	> th	dose dependent	rect.	17	17
40	170.95	temperature	30	90	< th	dose dependent	rect.	12	23
45	171.35	temperature	10	1440	> th	dose dependent	rect.	17	3
50	171.63	temperature	20	1440	> th	dose dependent	rect.	17	6
54	171.79	temperature	10	720	> th	dose dependent	rect.	15	20
106	172.79	temperature	30	1440	< th	dose dependent	rect.	18	2
142	173.48	temperature	30	720	< th	dose dependent	rect.	3	21
198	174.33	temperature	30	90	< th	dose dependent	rect.	5	18
215	174.67	temperature	20	1440	> th	dose dependent	sin	15	NA
240	174.91	temperature	25	720	> th	dose independent	rect.	7	17
251	175.05	temperature	25	720	> th	dose dependent	sin	11	NA
287	175.39	wind	7	43200	> th	dose independent	rect.	8	14
293	175.41	wind	7	43200	< th	dose independent	rect.	17	22
304	175.47	wind	7	43200	> th	dose independent	rect.	11	18
307	175.51	wind	7	43200	< th	dose independent	rect.	8	15
313	175.55	wind	7	43200	> th	dose independent	rect.	17	22
331	175.65	temperature	10	1440	> th	dose dependent	sin	16	NA
342	175.70	wind	7	43200	< th	dose independent	rect.	10	19
395	175.91	wind	7	43200	> th	dose dependent	rect.	12	17
400	175.94	wind	7	43200	> th	dose independent	rect.	3	19
401	175.94	wind	7	43200	< th	dose independent	rect.	3	19
471	176.16	wind	7	43200	> th	dose dependent	sin	17	NA
509	176.30	wind	7	43200	> th	dose independent	sin	19	NA
564	176.45	wind	7	43200	> th	dose dependent	rect.	14	10
568	176.46	wind	9	43200	< th	dose independent	rect.	14	16
634	176.64	wind	9	43200	> th	dose independent	rect.	14	16
677	176.76	wind	7	43200	< th	dose independent	sin	20	NA
691	176.80	wind	7	43200	> th	dose dependent	rect.	10	12
768	177.00	wind	7	43200	< th	dose independent	rect.	19	23
771	177.01	wind	7	43200	< th	dose independent	no	NA	NA
778	177.03	temperature	25	720	< th	dose independent	rect.	5	19
808	177.10	wind	7	43200	> th	dose independent	no	NA	NA
838	177.19	wind	7	43200	> th	dose independent	rect.	19	23
871	177.28	temperature	20	1440	> th	dose dependent	no	NA	NA
891	177.32	temperature	20	1440	> th	dose dependent	rect.	4	23
898	177.34	temperature	20	1440	> th	dose dependent	rect.	2	23
912	177.37	temperature	20	1440	> th	dose dependent	rect.	24	23
998	177.56	temperature	20	1440	> th	dose dependent	rect.	21	23