BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0165000 Os12g0165000|AK111883
(752 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0165000 WD40-like domain containing protein 1555 0.0
AK110495 392 e-109
AK110077 91 4e-18
Os09g0127800 Similar to Coatomer alpha subunit 79 2e-14
Os03g0339100 Similar to PRL1 protein 77 4e-14
Os03g0711400 Similar to Coatomer alpha subunit 77 4e-14
Os04g0592700 Quinonprotein alcohol dehydrogenase-like domai... 76 8e-14
Os06g0649500 WD40-like domain containing protein 75 2e-13
Os10g0494800 Similar to Katanin p80 WD40-containing subunit... 74 4e-13
Os01g0780400 WD40-like domain containing protein 74 4e-13
Os07g0205200 Similar to Transcription initiation factor TFI... 73 6e-13
Os03g0151700 Similar to WD repeat protein (Fragment) 73 1e-12
Os03g0685600 WD40-like domain containing protein 72 2e-12
Os07g0405100 Similar to F-box-like/WD-repeat protein ebi 70 4e-12
AK110547 70 8e-12
Os03g0725400 Similar to WD-repeat protein 5 (BMP2-induced 3... 69 1e-11
Os10g0104500 Similar to Notchless-related 67 5e-11
AK108888 67 6e-11
AK108115 67 7e-11
Os11g0594200 Similar to Notchless gene homolog 67 7e-11
>Os12g0165000 WD40-like domain containing protein
Length = 752
Score = 1555 bits (4025), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 752/752 (100%), Positives = 752/752 (100%)
Query: 1 MHRVGSAGNTAGSSRPRKEKRFTYVLNDADNKKHCAGINCLSYLNASTSGTSDYLFTGSR 60
MHRVGSAGNTAGSSRPRKEKRFTYVLNDADNKKHCAGINCLSYLNASTSGTSDYLFTGSR
Sbjct: 1 MHRVGSAGNTAGSSRPRKEKRFTYVLNDADNKKHCAGINCLSYLNASTSGTSDYLFTGSR 60
Query: 61 DGTLKRWEPKNGVASFSATFESHVDWVNDAIIVGQNLVSCSSDTTLKVWNCLSDGACTRT 120
DGTLKRWEPKNGVASFSATFESHVDWVNDAIIVGQNLVSCSSDTTLKVWNCLSDGACTRT
Sbjct: 61 DGTLKRWEPKNGVASFSATFESHVDWVNDAIIVGQNLVSCSSDTTLKVWNCLSDGACTRT 120
Query: 121 LRQHSDYVICLAASEKNSNIVASGGLGGEVFIWDLDSSLAPVAKSVDAKEDEAPNGNSGP 180
LRQHSDYVICLAASEKNSNIVASGGLGGEVFIWDLDSSLAPVAKSVDAKEDEAPNGNSGP
Sbjct: 121 LRQHSDYVICLAASEKNSNIVASGGLGGEVFIWDLDSSLAPVAKSVDAKEDEAPNGNSGP 180
Query: 181 ALTTLCNVNSSSNLASTNGQSHGYSPITAKGHKDSVYALAMSDTGNTLVSGGTEKVVRVW 240
ALTTLCNVNSSSNLASTNGQSHGYSPITAKGHKDSVYALAMSDTGNTLVSGGTEKVVRVW
Sbjct: 181 ALTTLCNVNSSSNLASTNGQSHGYSPITAKGHKDSVYALAMSDTGNTLVSGGTEKVVRVW 240
Query: 241 DPRTGSKKMKLRGHTDNIRALLLDPTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSV 300
DPRTGSKKMKLRGHTDNIRALLLDPTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSV
Sbjct: 241 DPRTGSKKMKLRGHTDNIRALLLDPTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSV 300
Query: 301 WALASTPSFSHVYSGGRDQSVYLTDLSNRESVLLCTNEHPILQLSLQDDMIWVATTDSSV 360
WALASTPSFSHVYSGGRDQSVYLTDLSNRESVLLCTNEHPILQLSLQDDMIWVATTDSSV
Sbjct: 301 WALASTPSFSHVYSGGRDQSVYLTDLSNRESVLLCTNEHPILQLSLQDDMIWVATTDSSV 360
Query: 361 NGWKAEAHEPLKLFQKGSSFLAGNLSFSRARASLEGSAPVPIHKEPSSIIPGVPAITQHE 420
NGWKAEAHEPLKLFQKGSSFLAGNLSFSRARASLEGSAPVPIHKEPSSIIPGVPAITQHE
Sbjct: 361 NGWKAEAHEPLKLFQKGSSFLAGNLSFSRARASLEGSAPVPIHKEPSSIIPGVPAITQHE 420
Query: 421 ILNNRRHVLTKDTAGSVKLWEITRGAVIEDFGKVSFEDKKKELFEMVSIPAWFTMDARLG 480
ILNNRRHVLTKDTAGSVKLWEITRGAVIEDFGKVSFEDKKKELFEMVSIPAWFTMDARLG
Sbjct: 421 ILNNRRHVLTKDTAGSVKLWEITRGAVIEDFGKVSFEDKKKELFEMVSIPAWFTMDARLG 480
Query: 481 CLSVHLDTPQCFSAEIYAVDLNVAGAQEDLKINLAQETLRGLLVHWSKKKQRSGSHGLSN 540
CLSVHLDTPQCFSAEIYAVDLNVAGAQEDLKINLAQETLRGLLVHWSKKKQRSGSHGLSN
Sbjct: 481 CLSVHLDTPQCFSAEIYAVDLNVAGAQEDLKINLAQETLRGLLVHWSKKKQRSGSHGLSN 540
Query: 541 GDTSTGKDVSLKNLPHPRSEVDDGAENHASQMLPSFEFSTVSPPSIITEGSSGGPWRKRI 600
GDTSTGKDVSLKNLPHPRSEVDDGAENHASQMLPSFEFSTVSPPSIITEGSSGGPWRKRI
Sbjct: 541 GDTSTGKDVSLKNLPHPRSEVDDGAENHASQMLPSFEFSTVSPPSIITEGSSGGPWRKRI 600
Query: 601 TDLDGTESDIPWWIVDCVEHNRFPKENTKCGFYLHPAEGSPAPNITQGKLSAPRILRIHK 660
TDLDGTESDIPWWIVDCVEHNRFPKENTKCGFYLHPAEGSPAPNITQGKLSAPRILRIHK
Sbjct: 601 TDLDGTESDIPWWIVDCVEHNRFPKENTKCGFYLHPAEGSPAPNITQGKLSAPRILRIHK 660
Query: 661 VANYVVEKLDRPLDGNADSTFGMGLTSGQSQFSALDSSSRLGLKPWQKLKPSVEILCNSQ 720
VANYVVEKLDRPLDGNADSTFGMGLTSGQSQFSALDSSSRLGLKPWQKLKPSVEILCNSQ
Sbjct: 661 VANYVVEKLDRPLDGNADSTFGMGLTSGQSQFSALDSSSRLGLKPWQKLKPSVEILCNSQ 720
Query: 721 VLAPEMSLATVRAYVWKKPEDLILNYKVVQSR 752
VLAPEMSLATVRAYVWKKPEDLILNYKVVQSR
Sbjct: 721 VLAPEMSLATVRAYVWKKPEDLILNYKVVQSR 752
>AK110495
Length = 660
Score = 392 bits (1007), Expect = e-109, Method: Compositional matrix adjust.
Identities = 240/699 (34%), Positives = 359/699 (51%), Gaps = 97/699 (13%)
Query: 12 GSSRPRKEKRFTYVLNDADNKKHCAGINCLSYLNASTSGTSDYLFTGSRDGTLKRWEPKN 71
G ++P+KE++ T + +H AG+ L+ S S L+T SRD +KRW
Sbjct: 6 GGAKPKKERKVTIIFKHTAANQHVAGVEALA-----VSPDSSRLYTASRDSIVKRWNVTA 60
Query: 72 GVASFSATFESHVDWVNDAIIVGQNLVSCSSDTTLKVWNCLSDGACTRTLRQHSDYVICL 131
G A+FE H+DWVND ++ LV+CSSD T+K+W + C T++ HSDYV CL
Sbjct: 61 GRPECDASFEGHIDWVNDVLLYQDKLVTCSSDRTVKIWGTGEEARCLHTVQHHSDYVTCL 120
Query: 132 AASEKNSNIVASGGLGGEVFIWDLDSSLAPVAKSVDAKEDEAPNGNSGPALTTLCNVNSS 191
AASE +V S GL EV +D+ + A + P+ + +T + +
Sbjct: 121 AASEAAGKLV-SAGLRSEVITYDMQTLQAHLLMPY-------PSSGAASGSSTGADAAAE 172
Query: 192 SNLASTNGQSHGYSPITAKGHKDSVYALAMSDTGNTLVSGGTEKVVRVWDPRTGSKKMKL 251
+ + GQ + SVYALAMS G + +G TE +R+ DPR+G K MKL
Sbjct: 173 AAGSGGGGQP-------PQAPMRSVYALAMSKAGTLVAAGTTESYIRLLDPRSGQKVMKL 225
Query: 252 RGHTDNIRALLLDPTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPSFSH 311
+GHTDN+RALLL+ G LSGSSD+ +RLWDLGQQRCI + VHTDSVW LA++P FS
Sbjct: 226 KGHTDNVRALLLNEEGTLLLSGSSDNTVRLWDLGQQRCIQTLNVHTDSVWCLAASPDFSV 285
Query: 312 VYSGGRDQSVYLTDLSNRESVLLCTNEHPILQLSLQDD--MIWVATTDSSVNGWK----- 364
VYSGGRD+++Y T + R++ LL I ++L ++ +WV+TT S+VNG++
Sbjct: 286 VYSGGRDKALYATHILKRKAWLLARESQAIRSIALANEGTRLWVSTTLSTVNGYEIPLEY 345
Query: 365 -------------------------------AEAHEPLKLFQKGSSF--------LAGNL 385
+ P+ + +G S + G
Sbjct: 346 CNPAVQQQQQQQLQHIQHQQPDRNSADGGVGSSPASPIAVALQGRSLSHTGSGRTIYGAS 405
Query: 386 SFSRARASLEGSA--PVPIHKEPSSIIPGVPAITQHEILNNRRHVLTKDTAGSVKLWEIT 443
R R S + A VP+ P I G P + +L ++RH+LT+D+ G V+LW++
Sbjct: 406 PSMRLRHSFDPGALGEVPL-LSPCVRIDGSPGLVALRVLCDKRHILTQDSNGQVQLWDVL 464
Query: 444 RGAVIEDFGKVSFEDKKKELFEMVSIPAWFTMDARLGCLSVHLDTPQCFSAEIYAVDLNV 503
G I+ G+V D ++ LF + + +WFT D +LG L+++L+ P+CF+AE YA+DL +
Sbjct: 465 AGQPIQQLGQVDLADMERRLFRPLYVESWFTADIKLGALALNLEPPKCFAAEAYALDLGI 524
Query: 504 AGAQEDLKINLAQETLRGLLVHWSKKKQRSGSHGLSNGDTSTGKDVSLKNLPHPRSEVDD 563
+D K+NL LR L W +H S + + P P
Sbjct: 525 RDVPDDQKVNLGACLLRAALSQW--------AHEFSK--------LYMGGAPIP------ 562
Query: 564 GAENHASQMLPSFEFSTVSPPSIITEGSSGGPWRKRITDLDGTE---SDIPWWIVDCVEH 620
G ++ ++ LP FS PP++++ +SG WR G E D+P W+ + V
Sbjct: 563 GVDDTGAEQLP--RFSDELPPAVVSTSASGVAWRLGANAFTGREREGEDLPNWVCEAVLR 620
Query: 621 NRFPK-ENTKCGFYLHPAEGSPAPNITQGKLSAPRILRI 658
P + K F L PAEGS P++ Q +L+APRIL++
Sbjct: 621 GMLPYVKELKAAFVLLPAEGSGLPSLLQSRLNAPRILQV 659
>AK110077
Length = 1242
Score = 90.5 bits (223), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 66/283 (23%), Positives = 127/283 (44%), Gaps = 36/283 (12%)
Query: 55 LFTGSRDGTLKRWEPKNGVASFSATFESHVDWVNDAIIVGQN--LVSCSSDTTLKVWNCL 112
L +G D +K W K F T H+D+V ++ ++S S D T+++WN
Sbjct: 68 LVSGGDDYKIKVWNHKTRKCLF--TLNGHLDYVRTVFFHHEHPWILSASDDQTIRIWNWQ 125
Query: 113 SDGACTRTLRQHSDYVICLAASEKNSNIVASGGLGGEVFIWDL------DSSLAPVAKSV 166
S C L H+ YV+C K+ +++ S + V +WD+ ++S P++
Sbjct: 126 SR-TCIAILTGHNHYVMCAQFHPKD-DLIVSASMDQTVRVWDISGLRKKNTSAQPMSI-- 181
Query: 167 DAKEDEAPNGNSGPALTTLCNVNSSSNLASTNGQSHGYSPITAKGHKDSVYALAMSDTGN 226
E++ NSG A G + +GH + + T
Sbjct: 182 ---EEQIARANSGQA--------------DLFGNTDAMVKYVLEGHDRGINWASFHPTLP 224
Query: 227 TLVSGGTEKVVRVWDPRTGSKKMKL---RGHTDNIRALLLDPTGRYCLSGSSDSMIRLWD 283
+VS G ++ +++W + SK ++ RGH +N+ + L P + +S + D IR+WD
Sbjct: 225 LIVSAGDDRQIKLWR-MSDSKAWEVDTCRGHFNNVSSALFHPRHEFIISDAEDKTIRVWD 283
Query: 284 LGQQRCIHSYAVHTDSVWALASTPSFSHVYSGGRDQSVYLTDL 326
+G++ + ++ +D W L + P+ + +++ G D + + L
Sbjct: 284 MGKRTAVQTFRRESDRFWVLTAHPTLN-LFAAGHDNGLIVFKL 325
>Os09g0127800 Similar to Coatomer alpha subunit
Length = 1218
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/272 (25%), Positives = 111/272 (40%), Gaps = 30/272 (11%)
Query: 50 GTSDYLFTGSRDGTLKRWEPKNGVASFSATFESHVDWVNDAIIVGQN--LVSCSSDTTLK 107
T +G D +K W K F T H+D++ + +VS S D T++
Sbjct: 61 ATQPLFVSGGDDYKIKVWNYKTHRCLF--TLHGHLDYIRTVQFHHEYPWIVSASDDQTIR 118
Query: 108 VWNCLSDGACTRTLRQHSDYVICLAASEKNSNIVASGGLGGEVFIWDLDSSLAPVAKSVD 167
+WN S C L H+ YV+C A+ ++V S L V +WD+ A K+V
Sbjct: 119 IWNWQSR-TCVAVLTGHNHYVMC-ASFHPKEDLVVSASLDQTVRVWDIG---ALRKKTVS 173
Query: 168 AKEDEAPNGNSGPALTTLCNVNSSSNLASTNGQSHGYSPITAKGHKDSVYALAMSDTGNT 227
+D + L +N+ G +GH V + T
Sbjct: 174 PADD----------ILRLTQMNTD-----LFGGVDAVVKYVLEGHDRGVNWASFHPTLPL 218
Query: 228 LVSGGTEKVVRVWDPRTGSKKM----KLRGHTDNIRALLLDPTGRYCLSGSSDSMIRLWD 283
+VSG ++ V++W R K LRGH +N+ ++ +S S D IR+WD
Sbjct: 219 IVSGADDRQVKLW--RMNDTKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWD 276
Query: 284 LGQQRCIHSYAVHTDSVWALASTPSFSHVYSG 315
++ I ++ D W LA+ P + + +G
Sbjct: 277 ATKRTGIQTFRREHDRFWILAAHPEMNLLAAG 308
>Os03g0339100 Similar to PRL1 protein
Length = 472
Score = 77.4 bits (189), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 64/238 (26%), Positives = 97/238 (40%), Gaps = 49/238 (20%)
Query: 83 HVDWVNDAIIVGQNLVSC--SSDTTLKVWNCLSDGACTRTLRQHSDYVICLAASEKNSNI 140
H+ WV N C S+D T+K+W+ L+ G TL H + + LA S++++ +
Sbjct: 161 HLGWVRSIAFDPSNEWFCTGSADRTIKIWD-LASGTLKLTLTGHIEQIRGLAVSQRHTYL 219
Query: 141 VASGGLGGEVFIWDLDSSLAPVAKSVDAKEDEAPNGNSGPALTTLCNVNSSSNLASTNGQ 200
++G +V WDL+ N
Sbjct: 220 FSAGD-DKQVKCWDLEQ----------------------------------------NKV 238
Query: 201 SHGYSPITAKGHKDSVYALAMSDTGNTLVSGGTEKVVRVWDPRTGSKKMKLRGHTDNIRA 260
Y GH VY LA+ T + L++GG + V RVWD RT + L GH + + +
Sbjct: 239 IRSY-----HGHLSGVYCLALHPTIDILLTGGRDSVCRVWDIRTKAHVSALTGHDNTVCS 293
Query: 261 LLLDPTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPSFSHVYSGGRD 318
+ PT ++GS DS I+ WDL R + + H SV A+A P S D
Sbjct: 294 VFARPTDPQVVTGSHDSTIKFWDLVAGRTMCTLTHHKKSVRAMALHPKEKSFASASAD 351
Score = 76.3 bits (186), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 60/122 (49%)
Query: 211 GHKDSVYALAMSDTGNTLVSGGTEKVVRVWDPRTGSKKMKLRGHTDNIRALLLDPTGRYC 270
GH V ++A + +G ++ +++WD +G+ K+ L GH + IR L + Y
Sbjct: 160 GHLGWVRSIAFDPSNEWFCTGSADRTIKIWDLASGTLKLTLTGHIEQIRGLAVSQRHTYL 219
Query: 271 LSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPSFSHVYSGGRDQSVYLTDLSNRE 330
S D ++ WDL Q + I SY H V+ LA P+ + +GGRD + D+ +
Sbjct: 220 FSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLALHPTIDILLTGGRDSVCRVWDIRTKA 279
Query: 331 SV 332
V
Sbjct: 280 HV 281
>Os03g0711400 Similar to Coatomer alpha subunit
Length = 1218
Score = 77.4 bits (189), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 67/272 (24%), Positives = 111/272 (40%), Gaps = 30/272 (11%)
Query: 50 GTSDYLFTGSRDGTLKRWEPKNGVASFSATFESHVDWVNDAIIVGQN--LVSCSSDTTLK 107
T +G D +K W K F T H+D++ + +VS S D T++
Sbjct: 61 ATQPLFVSGGDDYKIKVWNYKTHRCLF--TLHGHLDYIRTVQFHHEYPWIVSASDDQTIR 118
Query: 108 VWNCLSDGACTRTLRQHSDYVICLAASEKNSNIVASGGLGGEVFIWDLDSSLAPVAKSVD 167
+WN S C L H+ YV+C A+ ++V S L V +WD+ A K+V
Sbjct: 119 IWNWQSR-TCVAVLTGHNHYVMC-ASFHPKEDLVVSASLDQTVRVWDIG---ALRKKTVS 173
Query: 168 AKEDEAPNGNSGPALTTLCNVNSSSNLASTNGQSHGYSPITAKGHKDSVYALAMSDTGNT 227
+D + L +N+ G +GH V + T
Sbjct: 174 PADD----------ILRLTQMNTD-----LFGGVDAVVKYVLEGHDRGVNWASFHPTLPL 218
Query: 228 LVSGGTEKVVRVWDPRTGSKKM----KLRGHTDNIRALLLDPTGRYCLSGSSDSMIRLWD 283
+VSG ++ V++W R K LRGH +N+ ++ +S S D IR+WD
Sbjct: 219 IVSGADDRQVKLW--RMNDTKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRIWD 276
Query: 284 LGQQRCIHSYAVHTDSVWALASTPSFSHVYSG 315
++ I ++ D W L++ P + + +G
Sbjct: 277 ATKRTGIQTFRREHDRFWILSAHPEMNLLAAG 308
>Os04g0592700 Quinonprotein alcohol dehydrogenase-like domain containing protein
Length = 891
Score = 76.3 bits (186), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 101/234 (43%), Gaps = 8/234 (3%)
Query: 97 LVSCSSDTTLKVWNCLSDGACTRTLRQHSDYVICLAASEKNSNIVASGGLGGEVFIWDLD 156
+V+ S D+T+++W+ + +C + H + +A S+K+ N SG + IW D
Sbjct: 427 VVTGSKDSTVRLWD-MERRSCIGIGKGHLGAIGSVAFSKKSKNFFVSGSSDRTIKIWSWD 485
Query: 157 SSLAPV-------AKSVDAKEDEAPNGNSGPALTTLCNVNSSSNLASTNGQSHGYSPITA 209
+L V AK+V A D+ N S L S A + +
Sbjct: 486 DTLDDVGSEVPLKAKAVVAAHDKDINSLSVSPNDGLVCSGSEDRTACIWKLPNLVPSVVL 545
Query: 210 KGHKDSVYALAMSDTGNTLVSGGTEKVVRVWDPRTGSKKMKLRGHTDNIRALLLDPTGRY 269
KGHK ++++ S +++ ++ V++W GS GHT ++ G
Sbjct: 546 KGHKRGIWSVEFSPVEQCVITSSGDRTVKIWAVADGSCLKTFEGHTSSVLRASFLSHGTQ 605
Query: 270 CLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPSFSHVYSGGRDQSVYL 323
+S SD +++LW + CI ++ H VWALA + +GG D + L
Sbjct: 606 FVSCGSDGLVKLWTIKTNECIATFDKHDGKVWALAVGKKTEMLATGGTDAVLNL 659
>Os06g0649500 WD40-like domain containing protein
Length = 654
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 62/123 (50%)
Query: 211 GHKDSVYALAMSDTGNTLVSGGTEKVVRVWDPRTGSKKMKLRGHTDNIRALLLDPTGRYC 270
GH V + N + +G ++K VR+WD +TG GH + +L + P GRY
Sbjct: 488 GHLSDVDCVQWHVNCNYIATGSSDKTVRLWDVQTGECIRMFIGHRSMVLSLAMSPDGRYM 547
Query: 271 LSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPSFSHVYSGGRDQSVYLTDLSNRE 330
SG D I +WDL RC+ H+ VW+LA + + + SG D +V L D+++
Sbjct: 548 ASGDEDGTIMMWDLSSGRCVSPLGGHSSCVWSLAYSCEGALLASGSADCTVKLWDVASST 607
Query: 331 SVL 333
VL
Sbjct: 608 KVL 610
>Os10g0494800 Similar to Katanin p80 WD40-containing subunit B1 (Katanin p80
subunit B1) (p80 katanin)
Length = 875
Score = 73.9 bits (180), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 77/174 (44%), Gaps = 15/174 (8%)
Query: 205 SPITAKGHKDSVYALAMSDTGNTLVSGGTEKVVRVWDPRTGSKKMKLRGHTDNIRALLLD 264
S ++ G V +++ + + +G + +++WD GH + +L
Sbjct: 51 SILSLSGLTSPVESVSFDSSEAMIGAGASSGTIKIWDVDEAKVVRTFTGHRSSCASLDFH 110
Query: 265 PTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPSFSHVYSGGRDQSV--- 321
P G + SGSSD+ +++WD+ ++ CIH+Y HT + L TP + SGG D SV
Sbjct: 111 PFGEFFASGSSDTNMKIWDMRKKGCIHTYKGHTRRIDVLRFTPDGRWIVSGGSDNSVKIW 170
Query: 322 ------YLTDLSNRESVLLCTNEHPILQLSLQDDMIWVATTDSSVNGWKAEAHE 369
L D N E + C + HP + ++ + D +V W E E
Sbjct: 171 DLTAGKLLHDFRNHEGPINCLDFHP------HEFLLATGSADKTVKFWDLETFE 218
Score = 70.1 bits (170), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 90/209 (43%), Gaps = 3/209 (1%)
Query: 124 HSDYVICLAASEKNSNIVASGGLGGEVFIWDLDSSLAPVAKSVDAKEDEAPNGNSGPALT 183
H+ V C+ K S I+ +GG +V +W + + ++ S E+ + +S A+
Sbjct: 15 HASDVNCVKFGRKTSRILITGGEDQKVNLWAIGKPSSILSLSGLTSPVESVSFDSSEAMI 74
Query: 184 TLCNVNSSSNLASTNGQSHGYSPITAKGHKDSVYALAMSDTGNTLVSGGTEKVVRVWDPR 243
+SS T GH+ S +L G SG ++ +++WD R
Sbjct: 75 ---GAGASSGTIKIWDVDEAKVVRTFTGHRSSCASLDFHPFGEFFASGSSDTNMKIWDMR 131
Query: 244 TGSKKMKLRGHTDNIRALLLDPTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWAL 303
+GHT I L P GR+ +SG SD+ +++WDL + +H + H + L
Sbjct: 132 KKGCIHTYKGHTRRIDVLRFTPDGRWIVSGGSDNSVKIWDLTAGKLLHDFRNHEGPINCL 191
Query: 304 ASTPSFSHVYSGGRDQSVYLTDLSNRESV 332
P + +G D++V DL E +
Sbjct: 192 DFHPHEFLLATGSADKTVKFWDLETFELI 220
>Os01g0780400 WD40-like domain containing protein
Length = 838
Score = 73.9 bits (180), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 82/173 (47%), Gaps = 17/173 (9%)
Query: 207 ITAKGHKDSVYALAMSDTGNTLV-SGGTEKVVRVWDPRTGSKKMKLRGHTDNIRALLLDP 265
++ GH SV A+ DT LV +G + +++WD L GH + ++ P
Sbjct: 54 LSLSGHTGSVEAVEF-DTAEVLVLAGSSNGSIKLWDLEEAKVVRSLTGHRSSCTSVEFHP 112
Query: 266 TGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPSFSHVYSGGRDQSVYLTD 325
G + SGSSD+ +++WD+ ++ CIH+Y H ++ + TP V +GG D V + D
Sbjct: 113 FGEFFASGSSDTDLKIWDIKKKGCIHTYKGHRGAIRTIRFTPDGRWVVTGGEDNIVKVWD 172
Query: 326 LSNRESV---------LLCTNEHPILQLSLQDDMIWVATTDSSVNGWKAEAHE 369
L+ + + + C + HP Q+ ++ + D +V W E E
Sbjct: 173 LTAGKLLHDFKFHSGQIRCIDFHP------QEFLLATGSADRTVKFWDLETFE 219
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/209 (22%), Positives = 92/209 (44%), Gaps = 3/209 (1%)
Query: 124 HSDYVICLAASEKNSNIVASGGLGGEVFIWDLDSSLAPVAKSVDAKEDEAPNGNSGPALT 183
H V L+ +K+S + +GG +V +W + ++ S EA ++ L
Sbjct: 16 HDAEVRSLSIGKKSSRVFITGGSDRKVNLWAIGKQTPLLSLSGHTGSVEAVEFDTAEVLV 75
Query: 184 TLCNVNSSSNLASTNGQSHGYSPITAKGHKDSVYALAMSDTGNTLVSGGTEKVVRVWDPR 243
+ N S L ++ +T GH+ S ++ G SG ++ +++WD +
Sbjct: 76 LAGSSNGSIKLWDLE-EAKVVRSLT--GHRSSCTSVEFHPFGEFFASGSSDTDLKIWDIK 132
Query: 244 TGSKKMKLRGHTDNIRALLLDPTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWAL 303
+GH IR + P GR+ ++G D+++++WDL + +H + H+ + +
Sbjct: 133 KKGCIHTYKGHRGAIRTIRFTPDGRWVVTGGEDNIVKVWDLTAGKLLHDFKFHSGQIRCI 192
Query: 304 ASTPSFSHVYSGGRDQSVYLTDLSNRESV 332
P + +G D++V DL E +
Sbjct: 193 DFHPQEFLLATGSADRTVKFWDLETFELI 221
>Os07g0205200 Similar to Transcription initiation factor TFIID subunit 5
(Transcription initiation factor TFIID 100 kDa subunit)
(TAF(II)100) (TAFII-100) (TAFII100)
Length = 293
Score = 73.2 bits (178), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 60/123 (48%)
Query: 211 GHKDSVYALAMSDTGNTLVSGGTEKVVRVWDPRTGSKKMKLRGHTDNIRALLLDPTGRYC 270
GH V + N + +G ++K VR+WD +TG GH + +L + P GRY
Sbjct: 124 GHLSDVDCVQWHVNCNYIATGSSDKTVRLWDVQTGECIRMFIGHRSMVLSLAMSPDGRYM 183
Query: 271 LSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPSFSHVYSGGRDQSVYLTDLSNRE 330
SG D I +WD+ RC+ H VW+LA + + + SG D +V L D+++
Sbjct: 184 ASGDEDGTIMMWDISSGRCVSPLVGHNSCVWSLAYSCEGALLASGSADCTVKLWDVASST 243
Query: 331 SVL 333
L
Sbjct: 244 KTL 246
>Os03g0151700 Similar to WD repeat protein (Fragment)
Length = 940
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 58/119 (48%)
Query: 203 GYSPITAKGHKDSVYALAMSDTGNTLVSGGTEKVVRVWDPRTGSKKMKLRGHTDNIRALL 262
G T GH+ + AL +G + SG + + +WD + +LRGH D + L+
Sbjct: 100 GSCEATLHGHRSAASALVFGPSGAIIASGSKDCDIILWDVVGQAGLYRLRGHRDQVTGLV 159
Query: 263 LDPTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPSFSHVYSGGRDQSV 321
+G+ +S S D +IR+WDL Q C+ H +W++ PS + SG DQ +
Sbjct: 160 FLDSGKKLVSCSKDKLIRVWDLDTQHCLQIVGGHRSEIWSIDVDPSERFLVSGSADQEL 218
>Os03g0685600 WD40-like domain containing protein
Length = 394
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 74/304 (24%), Positives = 137/304 (45%), Gaps = 33/304 (10%)
Query: 121 LRQHSDYVICLAASEKNSNIVASGGLGGEVFIWD-----LDSSLAPVAKSVDAKEDEAPN 175
L H+D V C A + N++ASG G + +W+ L +L + + P
Sbjct: 103 LAGHTDTV-CTVAFSSDGNLLASGSFDGRINVWNTATRTLQGTLEGSGSGFEWLK-WHPR 160
Query: 176 GNSGPALTTLCNV---NSSSNLASTNGQSHGYSPITAKGHKDSVYALAMSDTGNTLVSGG 232
G+ A + CN+ N+ N A N T GH +V + G + +G
Sbjct: 161 GHLIIAGSEDCNLWMWNADHN-AILN---------TFAGHSSTVTCGDFTPDGKLICTGS 210
Query: 233 TEKVVRVWDPRTGSKKMKLRGH---TDNIRALLLDPTGRYCLSGSSDSMIRLWDLGQQRC 289
+ +R+WDPRT + +RGH TD + L + + +SGS D+ + + ++ +
Sbjct: 211 DDASLRIWDPRTAQSRHVVRGHGYHTDGLTCLSVTSDSQTIVSGSKDNSVCVVNINSGQV 270
Query: 290 IHSYAVHTDSVWALASTPSFSHVYSGGRDQSVYLTDLSNRESVLLCTNEHPILQLSLQDD 349
+ S HT S+ + +PS++ V +G DQ + + DL + C ++ + L+
Sbjct: 271 VGSLDGHTGSIECVGISPSYNWVATGSMDQKLIIWDLGRQSIRCTCNHDEGVTSLAWLGP 330
Query: 350 MIWVAT--TDSSVNGWKAEAHEPLKLFQKGSSFLAGNLSFSRARA-SLEGSAPVPIHKEP 406
+VA+ D V W + + E ++ F AG+ ++ A S +G++ V + +
Sbjct: 331 SRFVASGCIDGMVRIWDSLSGECVRAF-------AGHGDVVQSLAVSADGNSIVSVSTDG 383
Query: 407 SSII 410
S++I
Sbjct: 384 SALI 387
>Os07g0405100 Similar to F-box-like/WD-repeat protein ebi
Length = 555
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 110/255 (43%), Gaps = 32/255 (12%)
Query: 84 VDWVNDAIIVGQNLVSCSSDTTLKVWNCLSDGACTRTLRQHSDYVICLAASEKNSNIVAS 143
+DW + + L + S D ++WN SDG +TL +H + L ++K + + S
Sbjct: 272 LDWNGEGTL----LATGSYDGQARIWN--SDGELKQTLFKHKGPIFSLKWNKKG-DFLLS 324
Query: 144 GGLGGEVFIWDLDSSLAPVAKSVDAKEDEAPNGNSGPALTTLCNVNSSSNLASTNGQSH- 202
G + +WD K+ + K+ +S P L N+S ST+ +
Sbjct: 325 GSVDKTAIVWD--------TKTWECKQQ--FEFHSAPTLDVDWRNNNSFATCSTDNMIYV 374
Query: 203 ----GYSPITA-KGHKDSVYALAMSDTGNTLVSGGTEKVVRVWDPRTGSKKMKLRGHTDN 257
P+ + GH+ V A+ TG+ L S + ++W + + HT
Sbjct: 375 CKIGDQRPVKSFSGHQSEVNAIKWDPTGSLLASCSDDWTAKIWSMKQDKCVYDFKEHTKE 434
Query: 258 IRALLLDPTG---------RYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPS 308
I + PTG S S DS I+LW++ Q R ++S A H V+++A +P
Sbjct: 435 IYTIRWSPTGPGTNNPNQQLLLASASFDSTIKLWEVEQGRLLYSLAGHRQPVYSVAFSPG 494
Query: 309 FSHVYSGGRDQSVYL 323
++ SG DQ +++
Sbjct: 495 GEYLASGSLDQCLHI 509
>AK110547
Length = 412
Score = 69.7 bits (169), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 88/351 (25%), Positives = 137/351 (39%), Gaps = 63/351 (17%)
Query: 53 DYLFTGSRDGTLKRW----EPKNGVASFSATFE--SHVDWVNDAII--VGQNLVSCSSDT 104
D + TG +D W E AT E H D V A G L + S D+
Sbjct: 90 DLVATGGQDDKAFIWRVGQEAAEATGGSMATTELAGHTDTVVAAAFNTTGSLLATASLDS 149
Query: 105 TLKVWNCLSDGACTRTLRQHSDYVICLAASEKNSNIVASGGLGGEVFIWDLDSSLAPVAK 164
+++VW ++DG+C + D V LA K +I+ +G +++W
Sbjct: 150 SVRVWR-VADGSCVQAPEGPGDGVDWLAWHPKG-DILLAGSEDFTMWMW----------- 196
Query: 165 SVDAKEDEAPNGNSGPALTTLCNVNSSSNLASTNGQSHGYSPITAKGHKDSVYALAMSDT 224
LA T +S GH V A A +
Sbjct: 197 -----------------------------LAQTGNCMQVFS-----GHSGPVTAGAFTPD 222
Query: 225 GNTLVSGGTEK--VVRVWDPRTGSKKMKLRG---HTDNIRALLLDPTGRYCLSGSSDSMI 279
G +VS G E +RVW+P+TG ++L+G H D+I L + P G ++G+ D +
Sbjct: 223 GKLVVSVGGENDCSLRVWNPKTGECTVQLQGRPFHEDSITCLGVHPDGSVVITGAQDGSV 282
Query: 280 RLWDLGQQRCIHSYAVHTDSVWALASTPSFSHVYSGGRDQSVYLTDLSNRESVLLCTNEH 339
R+ ++ R + S H DSV A + + G D + + D N +C +E
Sbjct: 283 RVSNIHNSRIVASLQGHEDSVEAAGFSRHLPLAATAGIDGKLIIWDCGNFTERGVCQHEQ 342
Query: 340 PILQLSLQDDMIWVAT--TDSSVNGWKAEAHEPLKLFQKGSSFLAGNLSFS 388
PI +++ VAT D V W +K SS + +L+FS
Sbjct: 343 PITRMAWASQQPLVATGCLDGVVRLWDLRTSACVKQMHGHSSAVQ-DLTFS 392
>Os03g0725400 Similar to WD-repeat protein 5 (BMP2-induced 3-kb gene protein)
(WD-repeat protein BIG-3)
Length = 324
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 73/286 (25%), Positives = 120/286 (41%), Gaps = 35/286 (12%)
Query: 55 LFTGSRDGTLKRWEPKNGVASFSATFESHVDWVNDAIIV--GQNLVSCSSDTTLKVWNCL 112
L + S D L+ W + +AS A H + V+D G+ + S S D T+++W+
Sbjct: 34 LASASADKLLRVWSTSD-LASPVAELAGHGEGVSDLAFSPDGRLIASASDDRTVRIWDLG 92
Query: 113 S--------DGACTRTLRQHSDYVICLAASEKNSNIVASGGLGGEVFIWDLDSSLA---- 160
+ +TL H++Y CLA S + N++ASG V +W++ S
Sbjct: 93 DGGGGGGGGEPRLMKTLSGHTNYAFCLAFS-PHGNMLASGSFDETVRVWEVRSGRCLRVL 151
Query: 161 -----PVAKSVDAKEDEAPNGNSGPALTTLCNVNSSSNLASTNGQSHGYSPITAKGHKDS 215
PV SVD D A + + LC + S+ SP
Sbjct: 152 PAHSEPVT-SVDFNRDGAMIVSG--SYDGLCRIWDSATGHCIKTLIDDESP--------P 200
Query: 216 VYALAMSDTGNTLVSGGTEKVVRVWDPRTGSKKMKLRGHTDN---IRALLLDPTGRYCLS 272
V S G +++ + +R+W+ G GH + I A G+Y +S
Sbjct: 201 VSFAKFSPNGKFVLAATLDSKLRLWNFSAGKFLKTYTGHVNTKYCIPAAFSITNGKYIVS 260
Query: 273 GSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPSFSHVYSGGRD 318
GS D + +WDL ++ + HTD+V A++ P+ + + SGG D
Sbjct: 261 GSEDKCVYIWDLQSRKILQKLEGHTDTVIAVSCHPNENMIASGGLD 306
>Os10g0104500 Similar to Notchless-related
Length = 480
Score = 67.0 bits (162), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 63/253 (24%), Positives = 106/253 (41%), Gaps = 24/253 (9%)
Query: 34 HCAGINCLSYLNASTSGTSDYLFTGSRDGTLKRWEPKNGVASFSATFESHVDWVND-AII 92
H + C+ + G ++TGS D ++K WE G T + H WVN A+
Sbjct: 246 HTNSVTCVKW------GGDGLIYTGSEDCSIKVWETSQG--KLVKTLQGHGHWVNSLALS 297
Query: 93 VGQNLVSCSSDTTLKVWNC---LSDGACTRTLRQHSDYVICLAASEKNSNIVASGGLGGE 149
L + + D T K ++ + + A R + + A E+ + SG
Sbjct: 298 TEYVLRTGAYDHTGKTYSTAEEMKEAALARYKKMRGN------APER----LVSGSDDFT 347
Query: 150 VFIWDLDSSLAPVAKSVDAKEDEAPNGNSGPALTTLCNVNSSSNLASTNGQSHGYSPITA 209
+F+W+ S P A+ + + + P L + + ++ NG + G
Sbjct: 348 MFLWEPTISKQPKAR-MTGHQKLVNHVYFSPDGQWLASASFDKSVKLWNGIT-GKFVAAF 405
Query: 210 KGHKDSVYALAMSDTGNTLVSGGTEKVVRVWDPRTGSKKMKLRGHTDNIRALLLDPTGRY 269
+GH VY ++ S L+SG + ++VWD RT K L GH D + A+ P G
Sbjct: 406 RGHVADVYQISWSADSRLLLSGSKDSTLKVWDIRTRKLKQDLPGHADEVYAVDWSPDGEK 465
Query: 270 CLSGSSDSMIRLW 282
SG D +++LW
Sbjct: 466 VASGGKDRVLKLW 478
>AK108888
Length = 315
Score = 66.6 bits (161), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 81/323 (25%), Positives = 132/323 (40%), Gaps = 63/323 (19%)
Query: 17 RKEKRFTYVLNDADNKKHCAGINCLSYLNASTSGTSDYLFTGSRDGTLKRWE--PKNGVA 74
+ +FTY + K + CL A++ + L +GSRD TL WE + G
Sbjct: 3 EQSAKFTY---QGNLKGQGDWVTCL----ATSQANPNLLVSGSRDKTLITWEITREQGNY 55
Query: 75 SFSA-TFESHVDWVNDAIIV--GQNLVSCSSDTTLKVWNCLSDGACTRTLRQHSDYVICL 131
F+ + H +V+D I GQ VS S D TL++W L+ G ++ H V+ +
Sbjct: 56 GFAKRALKGHSHFVSDVAISSDGQWAVSGSWDKTLRLWE-LNTGV-SKAFVDHQKDVLSV 113
Query: 132 AASEKNSNIVASGGLGGEVFIWDLDSSLAPVAKSVDAKEDEAPNGNSGPALTTLCNVNSS 191
A S N+ I+ SG + +W++ G TL
Sbjct: 114 AFSPDNTKII-SGSRDKTIKLWNI----------------------LGECKYTL------ 144
Query: 192 SNLASTNGQSHGYSPITAKGHKDSVYALAM--SDTGNTLVSGGTEKVVRVWDPRTGSKKM 249
T +GH D V + S +V+ G +++V+VWD +
Sbjct: 145 ----------------TEQGHADWVSCVRFLPSAKKPVIVTAGWDRLVKVWDLSKWKLQT 188
Query: 250 KLRGHTDNIRALLLDPTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPSF 309
L GHT I + + P G C SG D + LWDL + ++S TD + AL P+
Sbjct: 189 NLVGHTGVINTITIAPDGSLCASGGKDGVAMLWDLKKGEHLYSLDA-TDPINALVFHPT- 246
Query: 310 SHVYSGGRDQSVYLTDLSNRESV 332
+ +S+ + +L +++ V
Sbjct: 247 RYWLCAATQKSIKIWNLESKQPV 269
>AK108115
Length = 316
Score = 66.6 bits (161), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 77/289 (26%), Positives = 115/289 (39%), Gaps = 59/289 (20%)
Query: 53 DYLFTGSRDGTLKRW-----EPKNGVASFSATFESHVDWVNDAIIV--GQNLVSCSSDTT 105
+ L +GSRD TL W E G S SH+ V+D +I G +S S D T
Sbjct: 29 NMLLSGSRDKTLIIWNLTRDETSYGYPKRSLHGHSHI--VSDCVISSDGAYALSSSWDKT 86
Query: 106 LKVWNCLSDGACTRTLRQHSDYVICLAASEKNSNIVASGGLGGEVFIWDLDSSLAPVAKS 165
L++W LS G TR H++ V+ ++ S N IV SG + +W+
Sbjct: 87 LRLWE-LSTGQTTRGFVGHNNDVLSVSFSADNRQIV-SGSRDRTIKLWN----------- 133
Query: 166 VDAKEDEAPNGNSGPALTTLCNVNSSSNLASTNGQSHGYSPITAKGHKDSVYALAMSDTG 225
TL + + IT KGH + V + S
Sbjct: 134 ------------------TLGDCKYT---------------ITDKGHTEWVSCVRFSPNP 160
Query: 226 N--TLVSGGTEKVVRVWDPRTGSKKMKLRGHTDNIRALLLDPTGRYCLSGSSDSMIRLWD 283
+VS G +K V+VW+ T + GHT I + + P G C SG D LWD
Sbjct: 161 QNPVIVSAGWDKFVKVWELATCRIQTDHIGHTGYINTVTISPDGSLCASGGKDGTTMLWD 220
Query: 284 LGQQRCIHSYAVHTDSVWALASTPSFSHVYSGGRDQSVYLTDLSNRESV 332
L + + ++S D + AL +P+ + S+ + DL + V
Sbjct: 221 LNESKHLYSLTA-GDEIHALVFSPN-RYWLCAATSSSIIVFDLEKKSKV 267
>Os11g0594200 Similar to Notchless gene homolog
Length = 480
Score = 66.6 bits (161), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 105/253 (41%), Gaps = 24/253 (9%)
Query: 34 HCAGINCLSYLNASTSGTSDYLFTGSRDGTLKRWEPKNGVASFSATFESHVDWVNDAIIV 93
H + C+ + G ++TGS D +K WE G T + H WVN +
Sbjct: 246 HTNSVTCVKW------GGDGLIYTGSEDCLIKVWETSQG--KLVKTLQGHGHWVNSLALS 297
Query: 94 GQNLVSCSS-DTTLKVWNC---LSDGACTRTLRQHSDYVICLAASEKNSNIVASGGLGGE 149
+ ++ + D T K ++ + + A R + + A E+ + SG
Sbjct: 298 TEYILRTGAYDHTGKTYSTADEMKEAALARYKKMRGN------APER----LVSGSDDFT 347
Query: 150 VFIWDLDSSLAPVAKSVDAKEDEAPNGNSGPALTTLCNVNSSSNLASTNGQSHGYSPITA 209
+F+W+ S P A+ + + + P L + + ++ NG + G
Sbjct: 348 MFLWEPTISKQPKAR-MTGHQKLVNHVYFSPDGQWLASASFDKSVKLWNGIT-GKFVAAF 405
Query: 210 KGHKDSVYALAMSDTGNTLVSGGTEKVVRVWDPRTGSKKMKLRGHTDNIRALLLDPTGRY 269
+GH VY ++ S L+SG + ++VWD RT K L GH D + A+ P G
Sbjct: 406 RGHVADVYQISWSADSRLLLSGSKDSTLKVWDIRTHKLKQDLPGHADEVYAVDWSPDGEK 465
Query: 270 CLSGSSDSMIRLW 282
SG D +++LW
Sbjct: 466 VASGGKDRVLKLW 478
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.130 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 27,982,288
Number of extensions: 1267024
Number of successful extensions: 3552
Number of sequences better than 1.0e-10: 25
Number of HSP's gapped: 3460
Number of HSP's successfully gapped: 36
Length of query: 752
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 644
Effective length of database: 11,396,689
Effective search space: 7339467716
Effective search space used: 7339467716
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 160 (66.2 bits)