Os09g0127800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Coatomer alpha subunit.
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Os09g0127800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Coatomer alpha subunit.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 35.52 | 0.28 | 10 | 1.07 | 0.0384 | 0.41 | -0.783 | -0.447 | 0.401 | 5.84 | 91.02 | 36 | -- | -- |
| 35.79 | 0.279 | 10 | 1.06 | 0.0431 | 0.38 | -0.936 | -- | 0.394 | 5.3 | 90.76 | 33 | -- | -- |
| 34.07 | 0.272 | 10 | 1.08 | 0.161 | 0.52 | -- | -2.14 | 0.361 | 2.38 | 94.01 | 192 | -- | -- |
| 35.89 | 0.279 | 10 | 1.09 | 0.143 | 0.991 | -- | -- | 0.374 | 1.28 | 94.64 | 238 | -- | -- |
| 34.79 | 0.275 | 10 | 1.08 | -- | 0.762 | -- | -1.8 | 0.389 | -- | 93.88 | 199 | -- | -- |
| 38.95 | 0.293 | 10 | 1.09 | 0.225 | -- | -0.571 | -- | 0.326 | 4.09 | -- | -- | -- | -- |
| 39.74 | 0.295 | 10 | 1.1 | 0.223 | -- | -- | -- | 0.33 | 3.26 | -- | -- | -- | -- |
| 37.06 | 0.284 | 10 | 1.09 | -- | 1 | -- | -- | 0.381 | -- | 94.58 | 199 | -- | -- |
| 66.03 | 0.378 | 10 | -- | 0.134 | 0.745 | -- | -- | 0.282 | 23.5 | 93.13 | 276 | -- | -- |
| 42.55 | 0.305 | 10 | 1.11 | -- | -- | -- | -- | 0.336 | -- | -- | -- | -- | -- |
| 71.48 | 0.395 | 10.1 | -- | 0.244 | -- | -- | -- | 0.207 | 3.26 | -- | -- | -- | -- |
| 66.89 | 0.381 | 10 | -- | -- | 0.651 | -- | -- | 0.297 | -- | 92.27 | 267 | -- | -- |
| 74.86 | 0.404 | 10.1 | -- | -- | -- | -- | -- | 0.213 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 32.99 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 10 | 3 |
| 11 | 33.88 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 12 | 33.88 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 17 | 34.06 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 18 | 34.06 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 19 | 34.06 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 20 | 34.06 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 3 |
| 47 | 34.55 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 2 | 2 |
| 48 | 34.55 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 2 | 2 |
| 55 | 34.68 | atmosphere | 1010.0 | 90 | < th | dose dependent | rect. | 23 | 8 |
| 65 | 34.89 | humidity | 90.0 | 10 | < th | dose independent | rect. | 2 | 10 |
| 73 | 34.97 | humidity | 90.0 | 30 | > th | dose dependent | sin | 6 | NA |
| 75 | 34.97 | humidity | 90.0 | 30 | > th | dose dependent | rect. | 24 | 10 |
| 78 | 34.98 | humidity | 90.0 | 30 | > th | dose dependent | rect. | 24 | 8 |
| 80 | 34.98 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 20 | 10 |
| 88 | 35.02 | humidity | 90.0 | 30 | > th | dose dependent | rect. | 24 | 18 |
| 93 | 35.05 | atmosphere | 1010.0 | 10 | < th | dose dependent | rect. | 22 | 10 |
| 120 | 35.13 | humidity | 90.0 | 10 | < th | dose independent | rect. | 24 | 12 |
| 123 | 35.14 | humidity | 90.0 | 270 | > th | dose dependent | sin | 11 | NA |
| 165 | 35.26 | wind | 1.0 | 1440 | < th | dose independent | rect. | 6 | 1 |
| 168 | 35.26 | temperature | 20.0 | 90 | > th | dose independent | rect. | 12 | 18 |
| 169 | 35.26 | wind | 7.0 | 720 | < th | dose independent | rect. | 15 | 19 |
| 173 | 35.27 | wind | 7.0 | 1440 | < th | dose independent | rect. | 14 | 1 |
| 180 | 35.28 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 204 | 35.31 | temperature | 20.0 | 270 | > th | dose independent | rect. | 10 | 20 |
| 221 | 35.34 | wind | 1.0 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 234 | 35.36 | humidity | 90.0 | 30 | > th | dose dependent | rect. | 21 | 13 |
| 245 | 35.37 | humidity | 90.0 | 30 | > th | dose dependent | rect. | 21 | 11 |
| 249 | 35.37 | humidity | 90.0 | 30 | > th | dose dependent | rect. | 21 | 21 |
| 304 | 35.45 | wind | 7.0 | 1440 | > th | dose independent | rect. | 14 | 2 |
| 339 | 35.51 | wind | 5.0 | 720 | > th | dose independent | rect. | 21 | 2 |
| 341 | 35.51 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 5 |
| 354 | 35.52 | wind | 5.0 | 1440 | > th | dose dependent | rect. | 14 | 1 |
| 376 | 35.53 | humidity | 90.0 | 30 | > th | dose dependent | rect. | 5 | 23 |
| 426 | 35.59 | atmosphere | 1005.0 | 270 | < th | dose independent | rect. | 22 | 7 |
| 432 | 35.59 | humidity | 90.0 | 30 | > th | dose dependent | rect. | 17 | 17 |
| 441 | 35.60 | humidity | 90.0 | 10 | > th | dose independent | rect. | 6 | 1 |
| 454 | 35.61 | humidity | 90.0 | 30 | > th | dose independent | sin | 6 | NA |
| 461 | 35.61 | humidity | 90.0 | 30 | > th | dose dependent | rect. | 17 | 15 |
| 480 | 35.62 | wind | 5.0 | 90 | < th | dose independent | rect. | 6 | 23 |
| 508 | 35.63 | wind | 7.0 | 720 | < th | dose independent | rect. | 15 | 10 |
| 510 | 35.63 | humidity | 90.0 | 30 | > th | dose dependent | no | NA | NA |
| 511 | 35.63 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 530 | 35.63 | humidity | 90.0 | 30 | > th | dose dependent | rect. | 9 | 23 |
| 567 | 35.65 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 3 |
| 598 | 35.66 | humidity | 90.0 | 30 | > th | dose dependent | rect. | 3 | 23 |
| 612 | 35.68 | humidity | 90.0 | 30 | > th | dose independent | rect. | 24 | 8 |
| 613 | 35.68 | humidity | 90.0 | 30 | > th | dose independent | rect. | 24 | 10 |
| 645 | 35.70 | humidity | 90.0 | 30 | > th | dose dependent | rect. | 7 | 23 |
| 648 | 35.71 | wind | 1.0 | 1440 | > th | dose independent | rect. | 23 | 2 |
| 649 | 35.71 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 683 | 35.73 | humidity | 90.0 | 270 | > th | dose dependent | no | NA | NA |
| 700 | 35.74 | wind | 5.0 | 90 | > th | dose independent | rect. | 12 | 20 |
| 702 | 35.74 | humidity | 90.0 | 10 | > th | dose dependent | rect. | 6 | 1 |
| 750 | 35.77 | humidity | 90.0 | 10 | < th | dose independent | sin | 5 | NA |
| 752 | 35.77 | humidity | 90.0 | 270 | < th | dose independent | rect. | 24 | 10 |
| 770 | 35.78 | atmosphere | 1010.0 | 90 | < th | dose dependent | rect. | 1 | 6 |
| 778 | 35.79 | wind | 7.0 | 720 | < th | dose independent | rect. | 17 | 1 |
| 875 | 35.83 | temperature | 20.0 | 270 | > th | dose independent | rect. | 19 | 11 |
| 917 | 35.84 | wind | 1.0 | 1440 | < th | dose dependent | rect. | 6 | 1 |
| 943 | 35.85 | wind | 7.0 | 720 | < th | dose independent | rect. | 17 | 8 |
| 967 | 35.87 | wind | 7.0 | 720 | < th | dose independent | rect. | 15 | 12 |
| 973 | 35.87 | humidity | 70.0 | 270 | > th | dose dependent | rect. | 21 | 9 |