Os03g0711400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Coatomer alpha subunit.
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Os03g0711400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Coatomer alpha subunit.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 43.93 | 0.311 | 9.78 | 1.62 | 0.232 | 0.754 | -0.441 | -1.84 | 0.33 | 4.37 | 93.9 | 314 | -- | -- |
| 45.58 | 0.314 | 9.78 | 1.6 | 0.219 | 1.03 | -0.943 | -- | 0.311 | 5.22 | 94.55 | 238 | -- | -- |
| 44.35 | 0.31 | 9.78 | 1.63 | 0.231 | 0.744 | -- | -2.15 | 0.334 | 4 | 93.9 | 314 | -- | -- |
| 47.38 | 0.321 | 9.78 | 1.6 | 0.232 | 1.1 | -- | -- | 0.311 | 4.18 | 94.71 | 239 | -- | -- |
| 46.59 | 0.318 | 9.78 | 1.61 | -- | 0.914 | -- | -1.9 | 0.36 | -- | 93.55 | 293 | -- | -- |
| 50.15 | 0.332 | 9.79 | 1.61 | 0.348 | -- | -0.812 | -- | 0.265 | 5.06 | -- | -- | -- | -- |
| 51.76 | 0.337 | 9.79 | 1.61 | 0.342 | -- | -- | -- | 0.269 | 4.69 | -- | -- | -- | -- |
| 49.68 | 0.328 | 9.78 | 1.6 | -- | 1.17 | -- | -- | 0.333 | -- | 94.4 | 245 | -- | -- |
| 113.02 | 0.495 | 9.81 | -- | 0.156 | 0.756 | -- | -- | 0.166 | 3.24 | 92.5 | 283 | -- | -- |
| 57.98 | 0.356 | 9.79 | 1.62 | -- | -- | -- | -- | 0.278 | -- | -- | -- | -- | -- |
| 120.09 | 0.513 | 9.83 | -- | 0.372 | -- | -- | -- | 0.0893 | 4.57 | -- | -- | -- | -- |
| 112.02 | 0.493 | 9.8 | -- | -- | 0.693 | -- | -- | 0.208 | -- | 89 | 274 | -- | -- |
| 127.48 | 0.527 | 9.83 | -- | -- | -- | -- | -- | 0.0975 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 43.61 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 10 | 3 |
| 2 | 44.00 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 9 | 44.52 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 12 | 1 |
| 10 | 44.52 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 12 | 1 |
| 27 | 45.00 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 33 | 45.08 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 34 | 45.10 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 20 | 14 |
| 36 | 45.12 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 20 | 22 |
| 39 | 45.15 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 5 |
| 41 | 45.15 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 20 | 17 |
| 50 | 45.19 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 16 | 18 |
| 59 | 45.21 | atmosphere | 1005.0 | 270 | < th | dose independent | rect. | 22 | 8 |
| 76 | 45.23 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 5 | 13 |
| 96 | 45.25 | humidity | 90.0 | 270 | > th | dose dependent | no | NA | NA |
| 107 | 45.26 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 3 |
| 117 | 45.26 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 9 | 23 |
| 131 | 45.29 | humidity | 90.0 | 270 | < th | dose independent | rect. | 24 | 10 |
| 132 | 45.30 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 23 | 23 |
| 139 | 45.34 | humidity | 90.0 | 270 | > th | dose dependent | sin | 8 | NA |
| 179 | 45.45 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 5 | 6 |
| 181 | 45.46 | atmosphere | 1005.0 | 10 | < th | dose independent | rect. | 24 | 8 |
| 216 | 45.58 | wind | 7.0 | 720 | < th | dose independent | rect. | 17 | 1 |
| 231 | 45.61 | atmosphere | 1010.0 | 90 | < th | dose dependent | rect. | 23 | 9 |
| 258 | 45.67 | atmosphere | 1010.0 | 10 | < th | dose dependent | rect. | 23 | 9 |
| 301 | 45.87 | humidity | 90.0 | 90 | > th | dose independent | rect. | 5 | 2 |
| 302 | 45.87 | humidity | 90.0 | 10 | > th | dose dependent | rect. | 6 | 1 |
| 307 | 45.89 | humidity | 90.0 | 10 | > th | dose independent | rect. | 6 | 1 |
| 309 | 45.89 | humidity | 90.0 | 30 | > th | dose independent | rect. | 5 | 5 |
| 373 | 46.05 | humidity | 90.0 | 30 | > th | dose independent | rect. | 5 | 13 |
| 383 | 46.09 | humidity | 90.0 | 270 | > th | dose independent | rect. | 21 | 13 |
| 388 | 46.11 | wind | 7.0 | 720 | < th | dose independent | rect. | 15 | 3 |
| 403 | 46.17 | humidity | 90.0 | 270 | > th | dose independent | sin | 8 | NA |
| 437 | 46.23 | humidity | 90.0 | 720 | > th | dose independent | rect. | 20 | 4 |
| 449 | 46.26 | atmosphere | 1005.0 | 270 | < th | dose independent | rect. | 3 | 2 |
| 464 | 46.28 | humidity | 90.0 | 270 | > th | dose independent | rect. | 21 | 21 |
| 466 | 46.30 | humidity | 90.0 | 270 | < th | dose independent | sin | 7 | NA |
| 467 | 46.30 | humidity | 90.0 | 270 | < th | dose independent | rect. | 5 | 5 |
| 500 | 46.33 | atmosphere | 1010.0 | 90 | < th | dose dependent | rect. | 5 | 2 |
| 543 | 46.39 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 3 | 7 |
| 562 | 46.43 | humidity | 90.0 | 720 | > th | dose independent | rect. | 20 | 1 |
| 563 | 46.43 | temperature | 15.0 | 270 | > th | dose independent | rect. | 19 | 11 |
| 621 | 46.50 | atmosphere | 1005.0 | 10 | < th | dose independent | rect. | 4 | 4 |
| 631 | 46.51 | atmosphere | 1005.0 | 90 | < th | dose independent | rect. | 5 | 2 |
| 663 | 46.55 | temperature | 15.0 | 10 | > th | dose independent | rect. | 23 | 9 |
| 665 | 46.55 | wind | 5.0 | 90 | < th | dose independent | rect. | 6 | 23 |
| 691 | 46.59 | temperature | 25.0 | 270 | > th | dose independent | rect. | 17 | 16 |
| 708 | 46.61 | humidity | 90.0 | 270 | > th | dose independent | rect. | 17 | 17 |
| 721 | 46.62 | atmosphere | 1010.0 | 270 | < th | dose dependent | rect. | 1 | 5 |
| 748 | 46.64 | humidity | 90.0 | 270 | < th | dose independent | rect. | 16 | 20 |
| 759 | 46.65 | wind | 7.0 | 720 | < th | dose independent | rect. | 15 | 12 |
| 764 | 46.65 | atmosphere | 1010.0 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 806 | 46.69 | temperature | 15.0 | 270 | > th | dose independent | rect. | 11 | 19 |
| 824 | 46.70 | humidity | 90.0 | 270 | > th | dose independent | rect. | 12 | 22 |
| 840 | 46.71 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 20 | 10 |
| 876 | 46.74 | humidity | 90.0 | 270 | > th | dose independent | rect. | 9 | 23 |
| 888 | 46.75 | temperature | 15.0 | 10 | > th | dose independent | rect. | 12 | 20 |
| 904 | 46.77 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 2 | 2 |
| 912 | 46.77 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 2 | 2 |
| 916 | 46.78 | humidity | 90.0 | 270 | > th | dose independent | no | NA | NA |
| 921 | 46.78 | temperature | 15.0 | 270 | > th | dose independent | rect. | 10 | 21 |
| 995 | 46.83 | humidity | 90.0 | 270 | > th | dose independent | rect. | 1 | 23 |