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Os12g0165000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : WD40-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.3 (0.0113) R2 : 0.226
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.274 (0.0238) R2dN8 : 0.291 R2N8 : 0.226
σ : 0.213
deviance : 20.78
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
10.26 0.15 11.3 0.407 0.222 -0.0357 -0.0788 -1.32 0.31 23.9 30.4 387 -- --
10.32 0.15 11.3 0.513 0.24 -0.166 -0.0394 -- 0.32 23.7 30.8 617 -- --
10.26 0.149 11.3 0.367 0.22 0.0185 -- -1.88 0.311 23.9 30.8 391 -- --
10.3 0.15 11.3 0.508 0.235 -0.191 -- -- 0.314 23.8 30.77 597 -- --
12.97 0.169 11.3 0.452 -- -0.113 -- -1.04 0.314 -- 30.8 391 -- --
11.01 0.156 11.3 0.485 0.229 -- -0.0604 -- 0.325 0.759 -- -- -- --
11.03 0.156 11.3 0.488 0.229 -- -- -- 0.325 0.786 -- -- -- --
12.5 0.165 11.3 0.527 -- -0.169 -- -- 0.338 -- 28.85 85 -- --
17.03 0.193 11.3 -- 0.222 -0.104 -- -- 0.263 0.659 30.77 597 -- --
14.3 0.177 11.3 0.496 -- -- -- -- 0.329 -- -- -- -- --
17.29 0.195 11.3 -- 0.237 -- -- -- 0.271 0.88 -- -- -- --
19.7 0.207 11.3 -- -- -0.131 -- -- 0.278 -- 28.81 93 -- --
20.78 0.213 11.3 -- -- -- -- -- 0.274 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 9.68 temperature 30 720 > th dose independent rect. 8 6
48 9.84 temperature 30 720 > th dose independent sin 8 NA
68 9.88 temperature 30 720 < th dose independent rect. 21 16
74 9.91 atmosphere 1005 270 > th dose dependent rect. 23 7
77 9.94 temperature 30 270 > th dose independent rect. 16 22
81 9.96 atmosphere 1005 270 > th dose dependent rect. 23 9
83 9.97 temperature 30 720 < th dose independent sin 6 NA
86 9.98 temperature 25 720 > th dose dependent rect. 8 3
91 9.99 temperature 25 270 > th dose independent rect. 24 7
96 10.00 temperature 25 270 > th dose independent rect. 24 5
98 10.00 temperature 25 720 > th dose dependent rect. 9 1
102 10.01 temperature 30 30 < th dose independent rect. 5 14
103 10.01 temperature 30 270 < th dose independent rect. 2 15
167 10.04 atmosphere 1000 10 > th dose dependent rect. 13 10
178 10.05 atmosphere 1005 270 > th dose dependent rect. 12 7
196 10.06 temperature 30 720 > th dose dependent sin 7 NA
198 10.06 temperature 25 270 > th dose dependent rect. 2 2
215 10.08 temperature 25 270 > th dose dependent rect. 1 4
230 10.09 atmosphere 1005 720 > th dose dependent rect. 20 7
248 10.10 atmosphere 1000 30 > th dose independent rect. 5 18
257 10.10 temperature 30 270 > th dose dependent rect. 16 21
260 10.11 atmosphere 1005 30 > th dose independent rect. 13 10
264 10.11 temperature 30 270 < th dose independent rect. 10 22
265 10.11 atmosphere 1005 270 > th dose dependent sin 8 NA
279 10.12 temperature 25 4320 > th dose independent rect. 1 1
280 10.12 temperature 25 4320 < th dose independent rect. 1 1
286 10.12 humidity 90 270 > th dose dependent rect. 1 6
296 10.13 radiation 10 270 > th dose independent rect. 16 2
305 10.13 temperature 25 270 < th dose independent rect. 23 10
315 10.13 atmosphere 1005 10 > th dose dependent rect. 14 5
320 10.14 temperature 25 1440 < th dose independent rect. 23 4
331 10.14 humidity 90 270 > th dose dependent rect. 3 3
423 10.17 atmosphere 1005 30 > th dose independent rect. 13 6
429 10.17 humidity 50 4320 < th dose dependent rect. 16 1
434 10.17 atmosphere 1010 720 < th dose dependent rect. 8 5
444 10.18 temperature 25 1440 > th dose independent rect. 21 7
450 10.18 temperature 30 720 < th dose independent rect. 3 8
453 10.18 atmosphere 1000 30 > th dose independent rect. 5 14
456 10.18 temperature 30 30 < th dose independent rect. 5 18
458 10.18 temperature 30 270 < th dose independent rect. 1 20
483 10.19 temperature 25 30 < th dose independent rect. 3 7
487 10.19 temperature 30 270 < th dose independent rect. 24 22
488 10.19 humidity 90 270 > th dose dependent sin 7 NA
492 10.19 atmosphere 1010 720 < th dose dependent rect. 9 2
503 10.19 atmosphere 1005 90 > th dose dependent rect. 23 15
517 10.20 temperature 30 720 < th dose independent rect. 5 8
519 10.20 temperature 30 720 < th dose independent rect. 3 10
521 10.20 atmosphere 1000 30 > th dose independent rect. 5 12
535 10.20 radiation 10 270 > th dose dependent rect. 16 2
549 10.20 atmosphere 1005 10 > th dose dependent rect. 16 7
614 10.21 humidity 70 14400 < th dose dependent rect. 20 12
615 10.21 atmosphere 1010 90 < th dose dependent rect. 9 12
628 10.22 atmosphere 1010 4320 > th dose independent rect. 18 1
640 10.22 temperature 30 270 < th dose independent rect. 14 16
670 10.22 atmosphere 1010 10 < th dose dependent rect. 9 11
697 10.23 temperature 25 270 < th dose independent sin 9 NA
699 10.23 atmosphere 1010 4320 < th dose independent rect. 18 1
703 10.23 temperature 30 270 < th dose independent rect. 12 7
706 10.23 temperature 30 270 < th dose independent rect. 12 9
723 10.23 temperature 25 4320 > th dose dependent rect. 24 1
725 10.23 atmosphere 1005 720 > th dose dependent rect. 23 2
771 10.24 temperature 25 10 < th dose independent rect. 4 4
793 10.24 atmosphere 1005 10 > th dose dependent rect. 16 3
807 10.24 atmosphere 1005 10 > th dose dependent rect. 24 9
821 10.24 atmosphere 1000 30 > th dose dependent rect. 23 19
827 10.25 temperature 25 10 > th dose independent rect. 4 1
878 10.25 atmosphere 1010 10 < th dose independent rect. 5 18
885 10.25 humidity 50 30 > th dose independent rect. 5 23
889 10.25 temperature 25 10 > th dose dependent rect. 4 1
895 10.25 atmosphere 1010 10 < th dose dependent rect. 5 3
933 10.26 humidity 90 10 < th dose independent rect. 4 1
936 10.26 temperature 30 43200 < th dose independent rect. 6 3
939 10.26 humidity 90 10 > th dose independent rect. 4 4
956 10.26 humidity 60 270 > th dose independent rect. 12 20
960 10.26 wind 9 43200 > th dose dependent rect. 20 1
963 10.26 atmosphere 1010 270 < th dose dependent rect. 3 3
1000 10.26 atmosphere 995 30 > th dose dependent rect. 19 23