BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0160500 Os12g0160500|AK120844
(417 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0160500 Similar to BEL1-related homeotic protein 5 379 e-105
Os11g0158600 POX domain containing protein 141 7e-34
Os05g0455200 Similar to Homeodomain protein JUBEL2 135 5e-32
Os03g0680800 Similar to Prep (Fragment) 135 7e-32
Os12g0636200 Similar to Prep (Fragment) 134 1e-31
Os03g0165300 Similar to Prep (Fragment) 133 2e-31
Os01g0848400 Acid phosphatase/vanadium-dependent haloperoxi... 133 2e-31
Os10g0534900 Similar to Prep (Fragment) 129 4e-30
Os06g0108900 POX domain containing protein 129 5e-30
Os03g0124000 POX domain containing protein 127 2e-29
Os06g0562300 POX domain containing protein 120 3e-27
Os02g0226600 POX domain containing protein 119 4e-27
Os03g0680700 Similar to Knotted1-interacting protein 118 7e-27
AK064665 116 3e-26
Os03g0732100 Similar to Homeodomain protein JUBEL1 91 2e-18
>Os12g0160500 Similar to BEL1-related homeotic protein 5
Length = 417
Score = 379 bits (973), Expect = e-105, Method: Compositional matrix adjust.
Identities = 203/317 (64%), Positives = 203/317 (64%)
Query: 101 LAWCTXXXXXXXXXXXWRPQRGLPERAVSVLRAWLFEHFLHPYPKDSDKVMLAKQTGLTR 160
LAWCT WRPQRGLPERAVSVLRAWLFEHFLHPYPKDSDKVMLAKQTGLTR
Sbjct: 101 LAWCTPPPPVGAAGGGWRPQRGLPERAVSVLRAWLFEHFLHPYPKDSDKVMLAKQTGLTR 160
Query: 161 SQVSNWFINARVRLWKPMVXXXXXXXXXXXXXXXXXXXXXXXXXGDRGGVAEQAPSKPDD 220
SQVSNWFINARVRLWKPMV GDRGGVAEQAPSKPDD
Sbjct: 161 SQVSNWFINARVRLWKPMVEEMYAEETKAKEEEEEEHDAAAAAAGDRGGVAEQAPSKPDD 220
Query: 221 SAGIGMXXXXXXXXXXXXXXXHAGDQHAQASFYXXXXXXDDPFQCRIKKXXXXXXXXXXX 280
SAGIGM HAGDQHAQASFY DDPFQCRIKK
Sbjct: 221 SAGIGMSSSSPAVAASRSVGVHAGDQHAQASFYGGGGGGDDPFQCRIKKARTTTADEPAA 280
Query: 281 XXXFHVSGEAAVSHRELLMKFTEAGGEGVRTXXXXXXXXXXXXXXXXXXYSLFTAAQYGH 340
FHVSGEAAVSHRELLMKFTEAGGEGVRT YSLFTAAQYGH
Sbjct: 281 AAAFHVSGEAAVSHRELLMKFTEAGGEGVRTGHPHVNDDDDDVPGGAGGYSLFTAAQYGH 340
Query: 341 QFGSDXXXXXXXXXXXXXXVSLTLGLPHGADQTPASFLIXXXXXXXXXXXPVTTAGYDMN 400
QFGSD VSLTLGLPHGADQTPASFLI PVTTAGYDMN
Sbjct: 341 QFGSDHFAFAGHGGGGGGGVSLTLGLPHGADQTPASFLIGAGAGSDGGGAPVTTAGYDMN 400
Query: 401 MQSTKSLAAQLMRDFVA 417
MQSTKSLAAQLMRDFVA
Sbjct: 401 MQSTKSLAAQLMRDFVA 417
>Os11g0158600 POX domain containing protein
Length = 678
Score = 141 bits (356), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 60/63 (95%), Positives = 63/63 (100%)
Query: 117 WRPQRGLPERAVSVLRAWLFEHFLHPYPKDSDKVMLAKQTGLTRSQVSNWFINARVRLWK 176
WRPQRGLPER+VS+LRAWLFEHFLHPYPKDSDK+MLAKQTGLTRSQVSNWFINARVRLWK
Sbjct: 363 WRPQRGLPERSVSILRAWLFEHFLHPYPKDSDKIMLAKQTGLTRSQVSNWFINARVRLWK 422
Query: 177 PMV 179
PMV
Sbjct: 423 PMV 425
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 74/194 (38%), Positives = 81/194 (41%), Gaps = 27/194 (13%)
Query: 243 AGDQHAQASFYXXXXXXDDP---FQCRIKKXXXXXXXXXXXXXXFHVSGEAA-------- 291
AGD AQA FY Q ++KK FHVS A
Sbjct: 493 AGDHQAQAGFYDDDDEDGGAAAALQQKLKKARTEEQQQAA----FHVSDVATLHAHAAAA 548
Query: 292 -------VSHRELLMKFTEAGGEGVRTXXXXXXXXXXXXXXXXXXYSLFTAAQYGHQFGS 344
VSHRELLMKF E+ YSLF A YG QF +
Sbjct: 549 AAARHDEVSHRELLMKFMES--GSAGAGAGAAARDHHHEHHGGVGYSLFAPAPYG-QFAT 605
Query: 345 DXXX-XXXXXXXXXXXVSLTLGLPHGADQTPASFLIXXXXXXXXXXXPVTTAGYDMNMQS 403
+ VSLTLGLPHGA+QT ASFL+ GYDMNMQS
Sbjct: 606 EQFAFAGHGGGGGGGGVSLTLGLPHGAEQT-ASFLMTSSNGSDGAGHVAGGGGYDMNMQS 664
Query: 404 TKSLAAQLMRDFVA 417
TKS AAQLMRDFVA
Sbjct: 665 TKSFAAQLMRDFVA 678
>Os05g0455200 Similar to Homeodomain protein JUBEL2
Length = 580
Score = 135 bits (340), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 60/63 (95%), Positives = 61/63 (96%)
Query: 117 WRPQRGLPERAVSVLRAWLFEHFLHPYPKDSDKVMLAKQTGLTRSQVSNWFINARVRLWK 176
WRPQRGLPERAVSVLRAWLFEHFLHPYP DSDK MLAKQTGLTR+QVSNWFINARVRLWK
Sbjct: 339 WRPQRGLPERAVSVLRAWLFEHFLHPYPTDSDKQMLAKQTGLTRNQVSNWFINARVRLWK 398
Query: 177 PMV 179
PMV
Sbjct: 399 PMV 401
>Os03g0680800 Similar to Prep (Fragment)
Length = 675
Score = 135 bits (339), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 55/63 (87%), Positives = 62/63 (98%)
Query: 117 WRPQRGLPERAVSVLRAWLFEHFLHPYPKDSDKVMLAKQTGLTRSQVSNWFINARVRLWK 176
WRPQRGLPE +VS+LRAWLFEHFLHPYPKDS+K+MLA+QTGLTRSQ+SNWFINARVRLWK
Sbjct: 382 WRPQRGLPENSVSILRAWLFEHFLHPYPKDSEKLMLARQTGLTRSQISNWFINARVRLWK 441
Query: 177 PMV 179
PM+
Sbjct: 442 PMI 444
>Os12g0636200 Similar to Prep (Fragment)
Length = 647
Score = 134 bits (337), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 54/63 (85%), Positives = 62/63 (98%)
Query: 117 WRPQRGLPERAVSVLRAWLFEHFLHPYPKDSDKVMLAKQTGLTRSQVSNWFINARVRLWK 176
WRPQRGLPE +V++LRAWLFEHFLHPYPKDS+K+MLA+QTGLTRSQ+SNWFINARVRLWK
Sbjct: 388 WRPQRGLPENSVTILRAWLFEHFLHPYPKDSEKLMLARQTGLTRSQISNWFINARVRLWK 447
Query: 177 PMV 179
PM+
Sbjct: 448 PMI 450
>Os03g0165300 Similar to Prep (Fragment)
Length = 600
Score = 133 bits (335), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 56/63 (88%), Positives = 61/63 (96%)
Query: 117 WRPQRGLPERAVSVLRAWLFEHFLHPYPKDSDKVMLAKQTGLTRSQVSNWFINARVRLWK 176
WRPQRGLPE AVSVLRAWLFEHFLHPYPKDS+K+MLA+QTGL+R QVSNWFINARVRLWK
Sbjct: 333 WRPQRGLPESAVSVLRAWLFEHFLHPYPKDSEKLMLARQTGLSRGQVSNWFINARVRLWK 392
Query: 177 PMV 179
PM+
Sbjct: 393 PMI 395
>Os01g0848400 Acid phosphatase/vanadium-dependent haloperoxidase family protein
Length = 612
Score = 133 bits (335), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 59/63 (93%), Positives = 60/63 (95%)
Query: 117 WRPQRGLPERAVSVLRAWLFEHFLHPYPKDSDKVMLAKQTGLTRSQVSNWFINARVRLWK 176
WRPQRGLPERAVSVLRAWLFEHFLHPYP D DK MLAKQTGLTR+QVSNWFINARVRLWK
Sbjct: 371 WRPQRGLPERAVSVLRAWLFEHFLHPYPTDGDKQMLAKQTGLTRNQVSNWFINARVRLWK 430
Query: 177 PMV 179
PMV
Sbjct: 431 PMV 433
>Os10g0534900 Similar to Prep (Fragment)
Length = 586
Score = 129 bits (324), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 55/63 (87%), Positives = 60/63 (95%)
Query: 117 WRPQRGLPERAVSVLRAWLFEHFLHPYPKDSDKVMLAKQTGLTRSQVSNWFINARVRLWK 176
WRPQRGLPERAVS+LRAWLFEHFLHPYP D DK +LA+QTGL+RSQV+NWFINARVRLWK
Sbjct: 325 WRPQRGLPERAVSILRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVANWFINARVRLWK 384
Query: 177 PMV 179
PMV
Sbjct: 385 PMV 387
>Os06g0108900 POX domain containing protein
Length = 530
Score = 129 bits (323), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 55/63 (87%), Positives = 60/63 (95%)
Query: 117 WRPQRGLPERAVSVLRAWLFEHFLHPYPKDSDKVMLAKQTGLTRSQVSNWFINARVRLWK 176
WRPQRGLPERAV+VLRAWLFEHFLHPYP D DK +LA+QTGL+RSQVSNWFINARVRLWK
Sbjct: 295 WRPQRGLPERAVAVLRAWLFEHFLHPYPNDVDKHILARQTGLSRSQVSNWFINARVRLWK 354
Query: 177 PMV 179
PM+
Sbjct: 355 PMI 357
>Os03g0124000 POX domain containing protein
Length = 591
Score = 127 bits (318), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 54/63 (85%), Positives = 60/63 (95%)
Query: 117 WRPQRGLPERAVSVLRAWLFEHFLHPYPKDSDKVMLAKQTGLTRSQVSNWFINARVRLWK 176
WRPQRGLP+RAV++LRAWLFEHFLHPYP D DK +LA+QTGL+RSQVSNWFINARVRLWK
Sbjct: 325 WRPQRGLPDRAVTILRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWK 384
Query: 177 PMV 179
PMV
Sbjct: 385 PMV 387
>Os06g0562300 POX domain containing protein
Length = 545
Score = 120 bits (300), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 49/63 (77%), Positives = 60/63 (95%)
Query: 117 WRPQRGLPERAVSVLRAWLFEHFLHPYPKDSDKVMLAKQTGLTRSQVSNWFINARVRLWK 176
WRPQRGLPE++V+VL+AW+FE+FL PYPKDS+K MLA ++GL+RSQVSNWFINARVRLWK
Sbjct: 450 WRPQRGLPEKSVAVLKAWMFENFLRPYPKDSEKDMLAARSGLSRSQVSNWFINARVRLWK 509
Query: 177 PMV 179
PM+
Sbjct: 510 PMI 512
>Os02g0226600 POX domain containing protein
Length = 539
Score = 119 bits (299), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 48/63 (76%), Positives = 60/63 (95%)
Query: 117 WRPQRGLPERAVSVLRAWLFEHFLHPYPKDSDKVMLAKQTGLTRSQVSNWFINARVRLWK 176
WRPQRGLPE++V+VL+AW+FE+FL PYPKDS+K MLA ++GL+R+QVSNWFINARVRLWK
Sbjct: 445 WRPQRGLPEKSVAVLKAWMFENFLRPYPKDSEKEMLAARSGLSRNQVSNWFINARVRLWK 504
Query: 177 PMV 179
PM+
Sbjct: 505 PMI 507
>Os03g0680700 Similar to Knotted1-interacting protein
Length = 346
Score = 118 bits (296), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 50/63 (79%), Positives = 57/63 (90%)
Query: 117 WRPQRGLPERAVSVLRAWLFEHFLHPYPKDSDKVMLAKQTGLTRSQVSNWFINARVRLWK 176
WRP RGLPE AV VLRAWLF+HFLHPYP D++K+MLA TGL+R+Q+SNWFINARVRLWK
Sbjct: 260 WRPLRGLPEDAVGVLRAWLFDHFLHPYPNDNEKLMLAVATGLSRTQISNWFINARVRLWK 319
Query: 177 PMV 179
PMV
Sbjct: 320 PMV 322
>AK064665
Length = 188
Score = 116 bits (290), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 50/63 (79%), Positives = 57/63 (90%)
Query: 117 WRPQRGLPERAVSVLRAWLFEHFLHPYPKDSDKVMLAKQTGLTRSQVSNWFINARVRLWK 176
WRP RGLPE AV VLRAWLF+HFLHPYP D++K+MLA TGL+R+Q+SNWFINARVRLWK
Sbjct: 102 WRPLRGLPEDAVGVLRAWLFDHFLHPYPNDNEKLMLAVATGLSRTQISNWFINARVRLWK 161
Query: 177 PMV 179
PMV
Sbjct: 162 PMV 164
>Os03g0732100 Similar to Homeodomain protein JUBEL1
Length = 631
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 36/52 (69%), Positives = 47/52 (90%)
Query: 117 WRPQRGLPERAVSVLRAWLFEHFLHPYPKDSDKVMLAKQTGLTRSQVSNWFI 168
WRPQRGLPER+V++LR+WLFEHFLHPYP D+DK +LA+QTGL+R+Q+ + I
Sbjct: 580 WRPQRGLPERSVNILRSWLFEHFLHPYPSDADKHLLARQTGLSRNQMHIYVI 631
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.134 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,915,028
Number of extensions: 176695
Number of successful extensions: 320
Number of sequences better than 1.0e-10: 15
Number of HSP's gapped: 315
Number of HSP's successfully gapped: 16
Length of query: 417
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 314
Effective length of database: 11,657,759
Effective search space: 3660536326
Effective search space used: 3660536326
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 157 (65.1 bits)