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Os03g0165300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Prep (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.3 (0.0198) R2 : 0.64
β1 : 1.03 (0.0723) R2dD : 0.166 R2D : 0.0898
β2 : 1.05 (0.0475) R2dC : 0.39 R2C : 0.354
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.546 (0.0422) R2dN8 : 0.177 R2N8 : 0.0787
σ : 0.371
deviance : 62.91
__
_____
C
peak time of C : 22.4
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
51.46 0.337 13.3 1.13 1.13 0.556 0.0475 -0.565 0.685 22.6 19.51 1361 -- --
52.06 0.336 13.3 1.13 1.16 0.552 0.136 -- 0.679 22.4 19.5 1228 -- --
51.01 0.333 13.3 1.14 1.2 0.563 -- -0.578 0.667 22.5 19.51 1225 -- --
51.49 0.334 13.3 1.06 1.29 0.611 -- -- 0.671 22.3 19.59 1109 -- --
91.06 0.447 13.3 1.03 -- 0.699 -- -0.396 0.529 -- 19.51 1225 -- --
62.89 0.372 13.3 1.03 1.05 -- 0.0582 -- 0.546 22.4 -- -- -- --
62.91 0.371 13.3 1.03 1.05 -- -- -- 0.546 22.4 -- -- -- --
91.9 0.448 13.3 1.05 -- 0.695 -- -- 0.532 -- 19.59 1109 -- --
82.7 0.424 13.3 -- 1.22 0.585 -- -- 0.66 22.1 20 22643 -- --
130.72 0.534 13.3 1.05 -- -- -- -- 0.55 -- -- -- -- --
90.94 0.446 13.4 -- 1.06 -- -- -- 0.431 22.5 -- -- -- --
120.9 0.514 13.3 -- -- 0.7 -- -- 0.418 -- 20 26247 -- --
159.74 0.59 13.3 -- -- -- -- -- 0.433 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 48.39 humidity 70.0 1440 > th dose independent rect. 11 1
2 49.65 radiation 1.0 1440 > th dose dependent rect. 11 1
4 49.99 radiation 20.0 1440 < th dose dependent rect. 11 1
6 50.08 radiation 40.0 1440 < th dose dependent rect. 11 1
9 50.64 humidity 70.0 1440 < th dose independent rect. 11 1
15 51.04 humidity 70.0 1440 > th dose independent rect. 6 8
18 51.05 humidity 70.0 1440 > th dose independent rect. 20 18
19 51.05 wind 3.0 43200 < th dose dependent rect. 4 2
22 51.06 humidity 70.0 1440 > th dose independent rect. 24 14
28 51.11 radiation 1.0 1440 > th dose dependent rect. 9 3
44 51.25 humidity 70.0 1440 > th dose dependent rect. 11 1
50 51.40 radiation 20.0 1440 > th dose independent rect. 9 1
51 51.41 wind 1.0 43200 > th dose dependent rect. 5 1
57 51.46 radiation 40.0 1440 < th dose independent rect. 11 1
58 51.48 radiation 40.0 1440 < th dose dependent rect. 9 3
88 51.66 radiation 20.0 1440 > th dose independent rect. 9 3
94 51.76 radiation 20.0 1440 < th dose independent rect. 9 1
95 51.76 temperature 20.0 720 > th dose independent rect. 23 8
100 51.80 temperature 20.0 720 < th dose independent rect. 1 6
101 51.81 humidity 70.0 1440 > th dose dependent rect. 9 5
102 51.82 humidity 70.0 1440 < th dose independent rect. 9 5
103 51.82 temperature 20.0 720 > th dose independent rect. 1 6
105 51.84 precipitation 0.1 14400 > th dose independent rect. 14 2
106 51.84 radiation 20.0 1440 < th dose independent rect. 16 22
107 51.84 precipitation 0.1 14400 > th dose dependent rect. 14 2
108 51.84 humidity 80.0 1440 < th dose dependent rect. 21 15
109 51.85 humidity 70.0 1440 > th dose independent sin 6 NA
112 51.86 radiation 40.0 1440 > th dose dependent rect. 14 22
113 51.87 precipitation 0.1 14400 < th dose independent rect. 14 2
114 51.87 precipitation 0.1 14400 < th dose dependent rect. 14 2
116 51.89 temperature 20.0 720 > th dose independent rect. 21 10
131 51.93 humidity 80.0 1440 < th dose independent rect. 2 12
138 51.94 radiation 40.0 1440 > th dose dependent rect. 8 4
159 51.97 temperature 20.0 720 > th dose independent rect. 3 3
163 51.98 humidity 80.0 1440 < th dose independent rect. 5 9
166 51.99 radiation 20.0 1440 < th dose independent rect. 16 20
169 52.00 radiation 20.0 1440 < th dose independent rect. 9 3
182 52.03 precipitation 0.1 14400 > th dose independent rect. 9 7
186 52.04 radiation 40.0 1440 < th dose dependent rect. 9 1
189 52.05 humidity 80.0 1440 < th dose dependent rect. 23 13
222 52.09 wind 3.0 43200 < th dose dependent rect. 1 6
230 52.13 precipitation 0.1 14400 < th dose independent rect. 9 7
231 52.13 precipitation 0.1 14400 < th dose dependent rect. 9 7
233 52.14 humidity 80.0 1440 < th dose dependent rect. 11 1
237 52.16 radiation 20.0 1440 < th dose independent rect. 11 1
241 52.18 radiation 20.0 1440 < th dose independent rect. 8 6
267 52.22 radiation 20.0 1440 < th dose independent rect. 6 8
268 52.22 radiation 20.0 1440 < th dose independent rect. 13 23
276 52.23 radiation 20.0 1440 < th dose independent rect. 20 18
291 52.24 radiation 20.0 1440 < th dose dependent rect. 8 6
303 52.27 radiation 20.0 1440 > th dose independent rect. 16 20
329 52.30 radiation 20.0 1440 < th dose independent rect. 8 23
337 52.32 temperature 20.0 720 < th dose independent rect. 5 2
342 52.32 radiation 20.0 1440 < th dose independent rect. 11 23
346 52.34 wind 3.0 43200 < th dose independent rect. 5 1
351 52.35 radiation 20.0 1440 < th dose independent sin 2 NA
352 52.35 wind 3.0 43200 > th dose independent rect. 5 1
370 52.36 radiation 20.0 1440 > th dose independent rect. 6 6
382 52.36 radiation 20.0 1440 < th dose independent rect. 8 15
385 52.36 radiation 20.0 1440 < th dose independent rect. 8 17
389 52.36 humidity 80.0 1440 < th dose dependent rect. 9 3
393 52.37 radiation 20.0 1440 < th dose independent rect. 8 9
403 52.37 radiation 20.0 1440 < th dose independent rect. 8 21
418 52.39 radiation 20.0 1440 < th dose independent rect. 6 11
419 52.39 radiation 20.0 1440 < th dose independent rect. 4 13
420 52.39 radiation 20.0 1440 < th dose independent rect. 6 17
421 52.39 radiation 20.0 1440 < th dose independent rect. 6 19
422 52.39 radiation 20.0 1440 < th dose independent rect. 4 21
443 52.40 radiation 20.0 1440 < th dose independent rect. 24 17
451 52.40 radiation 20.0 1440 < th dose independent rect. 22 19
459 52.40 radiation 20.0 1440 < th dose independent rect. 20 21
460 52.40 radiation 20.0 1440 < th dose independent rect. 24 21
470 52.40 radiation 20.0 1440 < th dose independent rect. 22 23
471 52.40 radiation 20.0 1440 < th dose independent rect. 24 23
472 52.40 humidity 80.0 1440 < th dose dependent sin 7 NA
476 52.41 radiation 20.0 1440 < th dose independent no NA NA
526 52.43 radiation 40.0 1440 < th dose independent rect. 15 21
566 52.46 radiation 20.0 1440 < th dose dependent rect. 7 9
568 52.47 temperature 20.0 720 > th dose independent rect. 5 1
575 52.47 radiation 40.0 1440 > th dose dependent sin 11 NA
653 52.54 humidity 80.0 14400 > th dose independent rect. 14 1
654 52.54 radiation 40.0 1440 < th dose independent rect. 8 4
672 52.56 wind 1.0 43200 > th dose independent rect. 4 3
684 52.57 humidity 70.0 1440 < th dose independent sin 6 NA
695 52.58 radiation 40.0 1440 > th dose independent rect. 11 1
725 52.60 wind 3.0 43200 < th dose independent rect. 7 1
727 52.60 radiation 40.0 1440 < th dose independent rect. 6 6
740 52.60 radiation 40.0 1440 < th dose independent rect. 19 17
748 52.61 radiation 40.0 1440 < th dose independent rect. 24 12
752 52.61 humidity 80.0 14400 > th dose dependent rect. 14 1
756 52.61 humidity 90.0 90 < th dose dependent rect. 24 18
758 52.62 wind 9.0 14400 > th dose independent rect. 7 4
817 52.65 radiation 20.0 1440 < th dose dependent rect. 19 21
834 52.66 radiation 20.0 1440 < th dose dependent rect. 24 16
836 52.66 radiation 20.0 1440 < th dose dependent rect. 22 18
838 52.67 humidity 80.0 1440 < th dose independent sin 4 NA
850 52.68 temperature 20.0 720 > th dose independent sin 9 NA
860 52.69 temperature 20.0 14400 > th dose dependent rect. 13 1
868 52.71 radiation 10.0 1440 > th dose dependent sin 7 NA
869 52.71 radiation 20.0 1440 < th dose dependent sin 1 NA
876 52.72 wind 3.0 43200 > th dose independent rect. 7 1
897 52.73 humidity 80.0 30 < th dose dependent rect. 11 23
915 52.75 humidity 60.0 1440 > th dose dependent rect. 2 12
918 52.75 radiation 40.0 1440 < th dose dependent rect. 19 17
919 52.76 wind 3.0 43200 < th dose independent rect. 5 4
938 52.77 radiation 10.0 1440 < th dose independent rect. 11 6
947 52.77 radiation 40.0 1440 < th dose dependent rect. 24 12
948 52.77 radiation 40.0 1440 < th dose dependent rect. 22 14
950 52.77 humidity 80.0 90 < th dose dependent rect. 21 21