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Os06g0108900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : POX domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.86 (0.0257) R2 : 0.48
β1 : -1.06 (0.0941) R2dD : 0.151 R2D : 0.148
β2 : 1.13 (0.0666) R2dC : 0.329 R2C : 0.323
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0461 (0.0549) R2dN8 : 0.00108 R2N8 : 0.00378
σ : 0.483
deviance : 106.58
__
_____
C
peak time of C : 7.1
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
95.74 0.46 7.89 -1.14 1.42 -0.851 0.334 0.194 -0.0206 4.18 0.05997 106 -- --
95.89 0.456 7.89 -1.14 1.42 -0.857 0.503 -- -0.0226 4.17 0.05993 106 -- --
95.94 0.456 7.89 -1.15 1.42 -0.851 -- 0.331 -0.0316 4.17 0.06 105 -- --
96.55 0.458 7.89 -1.14 1.43 -0.856 -- -- -0.023 4.16 0.06 104 -- --
155.05 0.583 7.88 -1.07 -- -0.403 -- 0.388 0.0559 -- 0.3601 29 -- --
106.58 0.484 7.86 -1.06 1.13 -- -0.027 -- 0.046 7.1 -- -- -- --
106.58 0.483 7.86 -1.06 1.13 -- -- -- 0.0461 7.1 -- -- -- --
155.72 0.584 7.88 -1.06 -- -0.403 -- -- 0.0614 -- 0.6119 13 -- --
131.76 0.535 7.88 -- 1.39 -0.853 -- -- -0.00586 4.19 0.31 108 -- --
173.53 0.616 7.88 -1.04 -- -- -- -- 0.0662 -- -- -- -- --
136.44 0.546 7.83 -- 1.12 -- -- -- 0.165 7.16 -- -- -- --
184.84 0.635 7.86 -- -- -0.395 -- -- 0.179 -- 1.08 6 -- --
202.2 0.664 7.86 -- -- -- -- -- 0.182 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 82.11 temperature 20.0 270 > th dose independent rect. 22 4
3 83.15 temperature 20.0 10 > th dose independent rect. 24 5
7 84.12 temperature 10.0 270 > th dose dependent rect. 22 4
13 84.81 temperature 15.0 10 > th dose dependent rect. 23 6
19 85.24 radiation 1.0 30 < th dose dependent sin 8 NA
20 85.33 temperature 20.0 90 > th dose independent rect. 9 19
25 85.63 temperature 10.0 270 > th dose dependent rect. 21 6
35 86.23 radiation 1.0 30 > th dose independent sin 9 NA
36 86.25 temperature 20.0 10 > th dose independent rect. 9 20
44 86.38 humidity 60.0 270 > th dose dependent rect. 22 4
58 86.69 radiation 1.0 30 < th dose independent sin 9 NA
65 86.81 humidity 80.0 270 > th dose independent rect. 23 3
68 86.90 humidity 80.0 10 > th dose independent rect. 24 5
71 86.92 humidity 50.0 10 > th dose dependent rect. 24 5
80 87.04 radiation 1.0 10 < th dose dependent rect. 24 16
84 87.21 atmosphere 1015.0 10 < th dose independent rect. 24 5
86 87.23 atmosphere 1015.0 10 < th dose dependent rect. 24 5
87 87.24 atmosphere 1015.0 270 < th dose independent rect. 23 3
94 87.29 wind 9.0 10 < th dose independent rect. 24 5
96 87.29 temperature 30.0 10 < th dose independent rect. 24 5
97 87.29 humidity 50.0 10 > th dose independent rect. 24 5
100 87.29 atmosphere 995.0 10 > th dose independent rect. 24 5
102 87.29 radiation 1.0 10 < th dose independent rect. 24 5
107 87.29 temperature 10.0 10 > th dose independent rect. 5 19
108 87.29 radiation 20.0 10 < th dose dependent rect. 24 5
112 87.30 radiation 1.0 10 < th dose dependent rect. 24 14
117 87.35 precipitation 0.1 10 < th dose independent rect. 5 19
118 87.35 temperature 20.0 270 > th dose independent rect. 7 20
119 87.35 precipitation 0.1 10 < th dose dependent rect. 5 19
120 87.37 radiation 20.0 10 < th dose independent rect. 5 5
125 87.44 precipitation 0.1 270 < th dose independent rect. 2 21
126 87.44 precipitation 0.1 270 < th dose dependent rect. 2 21
132 87.53 radiation 1.0 10 < th dose dependent rect. 24 12
139 87.55 temperature 30.0 270 < th dose independent rect. 23 3
140 87.55 humidity 50.0 270 > th dose independent rect. 23 3
143 87.55 atmosphere 995.0 270 > th dose independent rect. 23 3
144 87.55 radiation 1.0 270 < th dose independent rect. 23 3
149 87.55 temperature 10.0 270 > th dose independent rect. 2 21
150 87.55 radiation 1.0 270 < th dose dependent rect. 23 3
155 87.56 wind 9.0 270 < th dose independent rect. 23 3
159 87.62 precipitation 0.1 270 < th dose independent rect. 23 3
160 87.62 precipitation 0.1 270 < th dose dependent rect. 23 3
161 87.64 wind 9.0 270 < th dose dependent rect. 22 4
163 87.66 radiation 20.0 10 < th dose independent rect. 5 19
172 87.73 wind 9.0 270 < th dose independent rect. 7 10
178 87.77 humidity 50.0 10 > th dose independent rect. 5 19
179 87.77 atmosphere 995.0 10 > th dose dependent rect. 5 4
186 87.80 radiation 40.0 10 < th dose dependent rect. 5 5
209 87.92 precipitation 0.1 10 < th dose independent rect. 24 5
210 87.92 precipitation 0.1 10 < th dose dependent rect. 24 5
217 87.98 radiation 1.0 10 < th dose independent rect. 24 16
219 87.99 wind 9.0 270 < th dose independent rect. 6 23
225 88.04 radiation 20.0 90 < th dose independent rect. 5 4
226 88.04 atmosphere 995.0 10 > th dose independent rect. 5 19
230 88.08 wind 9.0 10 < th dose independent rect. 9 20
232 88.11 wind 9.0 270 < th dose independent rect. 7 20
233 88.11 temperature 15.0 270 > th dose dependent rect. 5 1
236 88.12 atmosphere 1005.0 10 > th dose independent rect. 5 4
239 88.15 radiation 40.0 90 < th dose dependent rect. 5 4
240 88.15 radiation 40.0 10 < th dose dependent rect. 5 19
247 88.19 radiation 1.0 10 < th dose independent rect. 24 14
275 88.26 radiation 1.0 90 > th dose independent rect. 18 13
287 88.36 humidity 50.0 270 > th dose dependent rect. 21 6
289 88.39 precipitation 0.1 270 < th dose independent rect. 17 14
292 88.39 precipitation 0.1 270 < th dose dependent rect. 17 14
293 88.43 radiation 1.0 10 < th dose independent rect. 24 12
309 88.55 wind 9.0 10 < th dose dependent rect. 24 5
313 88.57 atmosphere 1015.0 10 < th dose independent rect. 9 20
321 88.60 temperature 10.0 10 > th dose dependent rect. 5 4
322 88.61 humidity 70.0 10 > th dose independent rect. 5 5
325 88.62 precipitation 0.1 270 < th dose independent rect. 3 4
327 88.62 precipitation 0.1 270 < th dose dependent rect. 3 4
329 88.63 radiation 1.0 90 > th dose independent rect. 4 3
356 88.75 wind 3.0 90 < th dose dependent rect. 23 5
366 88.83 atmosphere 995.0 270 > th dose dependent rect. 3 4
381 88.88 radiation 10.0 270 < th dose independent rect. 3 4
382 88.88 radiation 20.0 270 < th dose independent rect. 17 14
385 88.91 precipitation 0.1 10 < th dose independent rect. 5 4
386 88.91 precipitation 0.1 10 < th dose dependent rect. 5 4
389 88.92 wind 7.0 10 < th dose independent rect. 5 4
391 88.92 temperature 10.0 10 > th dose independent rect. 5 4
393 88.92 temperature 30.0 10 < th dose independent rect. 5 4
394 88.92 humidity 50.0 10 > th dose independent rect. 5 4
396 88.92 atmosphere 995.0 10 > th dose independent rect. 5 4
397 88.92 atmosphere 1015.0 10 < th dose independent rect. 5 4
399 88.92 temperature 10.0 10 > th dose independent rect. 9 20
402 88.94 atmosphere 1005.0 270 > th dose independent rect. 3 4
407 89.00 humidity 70.0 270 > th dose independent rect. 3 4
415 89.02 wind 3.0 270 < th dose dependent rect. 23 2
416 89.03 wind 7.0 270 < th dose independent rect. 3 4
420 89.05 atmosphere 1005.0 270 > th dose independent rect. 5 1
423 89.05 temperature 10.0 270 > th dose independent rect. 3 4
425 89.05 temperature 30.0 270 < th dose independent rect. 3 4
426 89.05 humidity 50.0 270 > th dose independent rect. 3 4
428 89.05 atmosphere 995.0 270 > th dose independent rect. 3 4
429 89.05 atmosphere 1015.0 270 < th dose independent rect. 3 4
432 89.05 temperature 10.0 270 > th dose independent rect. 7 10
433 89.05 atmosphere 1015.0 270 < th dose independent rect. 7 10
434 89.05 temperature 10.0 270 > th dose independent rect. 17 14
442 89.09 atmosphere 1015.0 270 < th dose independent rect. 21 6
443 89.09 temperature 10.0 270 > th dose dependent rect. 3 4
458 89.11 precipitation 0.1 270 < th dose independent rect. 3 18
459 89.11 precipitation 0.1 270 < th dose dependent rect. 3 18
463 89.13 wind 9.0 10 < th dose independent rect. 5 19
464 89.13 atmosphere 1015.0 270 < th dose dependent rect. 23 3
466 89.15 precipitation 0.1 270 < th dose independent rect. 7 10
468 89.15 precipitation 0.1 270 < th dose dependent rect. 7 10
472 89.17 wind 9.0 10 < th dose dependent rect. 5 4
475 89.18 radiation 40.0 270 < th dose dependent rect. 3 4
484 89.20 atmosphere 995.0 270 > th dose dependent rect. 5 1
490 89.23 humidity 50.0 10 > th dose dependent rect. 5 5
492 89.24 radiation 10.0 270 < th dose independent rect. 5 1
515 89.32 atmosphere 1015.0 270 < th dose independent rect. 7 20
518 89.33 humidity 50.0 90 > th dose dependent rect. 5 4
535 89.37 wind 9.0 270 < th dose independent rect. 21 6
536 89.37 temperature 10.0 270 > th dose independent rect. 21 6
537 89.37 temperature 30.0 270 < th dose independent rect. 21 6
538 89.37 humidity 50.0 270 > th dose independent rect. 21 6
541 89.37 atmosphere 995.0 270 > th dose independent rect. 21 6
542 89.37 radiation 1.0 270 < th dose independent rect. 21 6
547 89.37 temperature 10.0 270 > th dose independent rect. 3 18
549 89.37 radiation 1.0 270 < th dose dependent rect. 21 6
556 89.40 wind 9.0 270 < th dose independent rect. 17 14
564 89.45 wind 3.0 10 < th dose independent rect. 24 5
651 89.57 precipitation 0.1 270 < th dose independent rect. 21 6
654 89.57 precipitation 0.1 270 < th dose dependent rect. 21 6
655 89.58 precipitation 0.1 90 < th dose independent rect. 5 2
658 89.58 precipitation 0.1 90 < th dose dependent rect. 5 2
672 89.60 wind 9.0 270 < th dose independent rect. 2 20
681 89.63 wind 5.0 90 < th dose independent rect. 5 2
687 89.64 radiation 40.0 270 < th dose dependent rect. 17 14
690 89.65 temperature 10.0 90 > th dose independent rect. 5 2
692 89.65 temperature 30.0 90 < th dose independent rect. 5 2
693 89.65 humidity 50.0 90 > th dose independent rect. 5 2
695 89.65 atmosphere 995.0 90 > th dose independent rect. 5 2
696 89.65 atmosphere 1015.0 90 < th dose independent rect. 5 2
697 89.65 radiation 30.0 90 < th dose independent rect. 5 2
699 89.65 temperature 10.0 90 > th dose independent rect. 7 22
714 89.68 radiation 40.0 270 < th dose dependent rect. 3 6
717 89.69 atmosphere 995.0 10 > th dose independent rect. 9 20
728 89.74 precipitation 0.1 270 < th dose independent rect. 7 20
729 89.74 precipitation 0.1 270 < th dose dependent rect. 7 20
732 89.75 temperature 10.0 10 > th dose dependent rect. 9 20
744 89.79 humidity 50.0 270 > th dose independent rect. 17 14
750 89.82 wind 9.0 90 < th dose dependent rect. 5 2
794 89.87 wind 9.0 270 < th dose independent rect. 9 17
807 89.90 atmosphere 995.0 270 > th dose independent rect. 2 20
811 89.91 atmosphere 1015.0 10 < th dose independent rect. 5 19
823 89.95 atmosphere 995.0 270 > th dose independent rect. 17 14
825 89.95 humidity 60.0 10 > th dose dependent rect. 22 7
837 89.98 radiation 20.0 270 < th dose independent rect. 2 7
883 90.03 radiation 40.0 270 < th dose dependent rect. 5 1
887 90.04 precipitation 0.1 10 < th dose independent rect. 9 20
888 90.04 precipitation 0.1 10 < th dose dependent rect. 9 20
908 90.09 radiation 1.0 10 < th dose dependent rect. 22 18
910 90.10 atmosphere 1015.0 10 < th dose independent rect. 22 7
916 90.12 atmosphere 1015.0 90 < th dose independent rect. 7 22