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Os03g0680800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Prep (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.5 (0.0168) R2 : 0.016
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0964 (0.0354) R2dN8 : 0.0207 R2N8 : 0.016
σ : 0.317
deviance : 46.01
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
16.46 0.191 13.5 -0.289 0.809 -0.292 0.0615 0.022 0.0475 7 49.06 848 -- --
16.46 0.189 13.5 -0.288 0.807 -0.29 0.0677 -- 0.0476 7 49 850 -- --
16.47 0.189 13.5 -0.29 0.807 -0.293 -- 0.0572 0.0468 7 49 850 -- --
16.47 0.189 13.5 -0.286 0.806 -0.289 -- -- 0.0479 7 49 852 -- --
42.5 0.304 13.5 -0.311 -- -0.282 -- 0.316 0.0489 -- 45.43 1337 -- --
17.69 0.197 13.5 -0.273 0.714 -- 0.0342 -- 0.0538 6.63 -- -- -- --
17.69 0.197 13.5 -0.272 0.714 -- -- -- 0.0537 6.63 -- -- -- --
32.6 0.266 13.5 -0.252 -- 0.677 -- -- 0.0628 -- 54.49 464 -- --
18.62 0.201 13.5 -- 0.793 -0.262 -- -- 0.0793 6.99 48.95 853 -- --
44.29 0.311 13.5 -0.255 -- -- -- -- 0.0681 -- -- -- -- --
19.64 0.207 13.5 -- 0.711 -- -- -- 0.084 6.65 -- -- -- --
33.42 0.269 13.5 -- -- 0.593 -- -- 0.138 -- 65.87 470 -- --
46.01 0.317 13.5 -- -- -- -- -- 0.0964 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 15.62 humidity 50.0 720 > th dose dependent rect. 15 9
2 15.62 temperature 25.0 30 > th dose dependent rect. 18 11
5 15.65 temperature 25.0 30 > th dose dependent rect. 18 8
10 15.73 humidity 90.0 720 < th dose dependent rect. 16 3
16 15.79 humidity 90.0 720 < th dose dependent rect. 16 5
23 15.83 temperature 15.0 30 > th dose dependent rect. 18 7
27 15.85 humidity 70.0 720 < th dose independent rect. 17 2
28 15.85 temperature 20.0 30 > th dose independent rect. 12 6
34 15.88 wind 9.0 30 < th dose independent rect. 12 6
36 15.88 atmosphere 1010.0 10 < th dose independent rect. 12 6
38 15.88 temperature 15.0 30 > th dose independent rect. 18 18
39 15.88 precipitation 0.1 30 < th dose independent rect. 18 18
40 15.88 wind 9.0 10 < th dose dependent rect. 12 6
43 15.88 precipitation 0.1 30 < th dose dependent rect. 18 18
47 15.90 temperature 10.0 30 > th dose independent rect. 12 6
51 15.90 atmosphere 995.0 30 > th dose independent rect. 18 18
56 15.91 wind 9.0 30 < th dose independent rect. 18 18
58 15.91 temperature 25.0 270 > th dose dependent rect. 17 5
60 15.91 humidity 60.0 720 > th dose dependent rect. 19 5
66 15.92 temperature 25.0 270 > th dose dependent rect. 17 9
79 15.94 wind 1.0 30 > th dose independent rect. 12 6
94 15.96 precipitation 0.1 10 < th dose independent rect. 12 6
96 15.96 temperature 15.0 90 > th dose independent rect. 3 9
97 15.96 precipitation 0.1 10 < th dose dependent rect. 12 6
108 15.98 precipitation 0.1 90 < th dose independent rect. 3 9
111 15.98 precipitation 0.1 90 < th dose dependent rect. 3 9
121 15.99 temperature 15.0 270 > th dose dependent rect. 16 6
128 15.99 temperature 15.0 30 > th dose dependent rect. 18 11
132 15.99 humidity 50.0 720 > th dose dependent rect. 5 19
134 16.00 temperature 25.0 270 > th dose dependent rect. 17 2
147 16.01 atmosphere 995.0 30 > th dose independent rect. 12 6
154 16.02 atmosphere 995.0 90 > th dose independent rect. 3 9
155 16.02 atmosphere 1015.0 90 < th dose independent rect. 3 9
156 16.02 temperature 10.0 90 > th dose independent rect. 12 15
158 16.02 temperature 15.0 720 > th dose dependent rect. 17 2
169 16.02 humidity 70.0 720 < th dose dependent rect. 16 17
170 16.03 wind 9.0 90 < th dose independent rect. 3 9
171 16.03 humidity 70.0 720 < th dose independent rect. 16 16
181 16.04 humidity 70.0 720 > th dose independent rect. 15 9
182 16.04 radiation 1.0 720 < th dose independent rect. 14 10
184 16.04 radiation 40.0 30 < th dose independent rect. 18 18
193 16.05 wind 9.0 90 < th dose independent rect. 12 15
206 16.06 atmosphere 1015.0 30 < th dose independent rect. 18 18
234 16.08 temperature 30.0 90 < th dose independent rect. 3 9
237 16.08 temperature 25.0 30 > th dose independent rect. 18 11
281 16.11 temperature 30.0 720 < th dose independent rect. 16 8
283 16.11 precipitation 0.1 720 < th dose independent rect. 7 15
284 16.11 humidity 60.0 720 > th dose independent rect. 17 16
286 16.11 humidity 50.0 720 > th dose dependent sin 16 NA
290 16.11 radiation 10.0 720 < th dose dependent rect. 14 10
294 16.11 precipitation 0.1 720 < th dose dependent rect. 7 15
300 16.12 precipitation 0.1 270 < th dose independent rect. 14 23
310 16.12 humidity 50.0 90 > th dose dependent rect. 12 15
313 16.12 humidity 50.0 720 > th dose dependent rect. 14 17
315 16.12 humidity 50.0 720 > th dose dependent rect. 12 19
316 16.12 precipitation 0.1 270 < th dose dependent rect. 14 23
321 16.13 radiation 1.0 720 < th dose independent rect. 9 15
365 16.15 precipitation 0.1 720 < th dose independent rect. 9 10
371 16.15 humidity 90.0 10 < th dose independent rect. 18 18
377 16.15 radiation 40.0 720 < th dose dependent rect. 15 9
380 16.15 precipitation 0.1 720 < th dose dependent rect. 9 10
389 16.16 temperature 30.0 720 < th dose independent rect. 12 21
390 16.16 wind 5.0 30 < th dose dependent rect. 18 1
404 16.16 temperature 10.0 30 > th dose dependent rect. 18 18
435 16.18 temperature 30.0 720 < th dose independent rect. 12 12
451 16.19 atmosphere 1005.0 30 > th dose independent rect. 18 1
453 16.19 humidity 50.0 10 > th dose independent rect. 12 6
454 16.19 radiation 1.0 720 > th dose independent rect. 9 10
471 16.19 atmosphere 1015.0 10 < th dose dependent rect. 12 6
481 16.19 radiation 40.0 30 < th dose dependent rect. 18 19
483 16.19 humidity 90.0 720 < th dose dependent rect. 16 20
493 16.20 humidity 90.0 720 < th dose dependent sin 15 NA
508 16.21 temperature 25.0 270 > th dose independent rect. 17 2
521 16.21 humidity 80.0 720 < th dose independent rect. 10 11
528 16.21 humidity 90.0 30 < th dose dependent rect. 18 7
540 16.22 temperature 25.0 30 > th dose independent rect. 18 1
541 16.22 radiation 1.0 90 > th dose independent rect. 18 1
545 16.22 temperature 25.0 270 > th dose independent rect. 17 4
582 16.23 humidity 60.0 720 > th dose independent sin 11 NA
590 16.23 humidity 50.0 270 > th dose independent rect. 12 14
599 16.23 humidity 70.0 720 > th dose dependent rect. 21 2
618 16.23 radiation 1.0 720 < th dose dependent rect. 9 15
633 16.24 atmosphere 995.0 90 > th dose independent rect. 12 15
637 16.24 humidity 80.0 720 > th dose independent rect. 5 19
640 16.24 temperature 20.0 30 > th dose dependent rect. 18 1
654 16.24 humidity 60.0 90 < th dose dependent rect. 18 15
659 16.25 humidity 90.0 30 < th dose independent rect. 18 1
661 16.25 temperature 25.0 30 > th dose independent rect. 18 3
671 16.25 radiation 10.0 30 < th dose dependent rect. 18 1
694 16.26 radiation 1.0 720 > th dose independent rect. 17 2
715 16.26 humidity 90.0 10 < th dose independent rect. 18 11
723 16.26 humidity 60.0 90 < th dose independent rect. 18 15
728 16.26 humidity 70.0 90 < th dose dependent rect. 18 1
729 16.26 humidity 50.0 720 > th dose dependent rect. 15 2
733 16.26 humidity 50.0 30 > th dose dependent rect. 12 6
736 16.26 humidity 90.0 30 < th dose dependent rect. 18 11
756 16.27 wind 1.0 90 > th dose independent rect. 3 9
760 16.27 atmosphere 1010.0 10 < th dose independent rect. 6 12
769 16.27 atmosphere 1015.0 30 < th dose dependent rect. 18 1
770 16.27 radiation 1.0 90 > th dose dependent rect. 18 1
799 16.27 humidity 80.0 90 > th dose dependent rect. 12 15
816 16.28 temperature 30.0 90 < th dose independent rect. 12 15
821 16.28 radiation 40.0 270 < th dose independent rect. 15 21
822 16.28 wind 9.0 30 < th dose independent rect. 19 23
860 16.28 radiation 10.0 10 < th dose dependent rect. 18 14
868 16.28 humidity 80.0 30 > th dose dependent rect. 5 23
869 16.29 humidity 70.0 720 < th dose independent sin 13 NA
870 16.29 wind 1.0 30 > th dose independent rect. 18 1
871 16.29 wind 7.0 30 < th dose independent rect. 18 1
874 16.29 temperature 10.0 30 > th dose independent rect. 18 1
876 16.29 humidity 50.0 30 > th dose independent rect. 18 1
878 16.29 atmosphere 995.0 30 > th dose independent rect. 18 1
880 16.29 atmosphere 1010.0 30 < th dose independent rect. 18 1
882 16.29 radiation 10.0 30 < th dose independent rect. 18 1
886 16.29 precipitation 0.1 30 < th dose independent rect. 18 1
909 16.29 temperature 10.0 30 > th dose independent rect. 19 23
912 16.29 precipitation 0.1 30 < th dose dependent rect. 18 1
916 16.29 humidity 90.0 30 < th dose dependent rect. 18 4
922 16.29 temperature 10.0 30 > th dose dependent rect. 12 6
951 16.30 humidity 60.0 720 < th dose independent sin 11 NA
977 16.30 precipitation 0.1 30 < th dose independent rect. 12 15
980 16.30 atmosphere 1010.0 10 < th dose independent rect. 1 17