Os10g0534900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Prep (Fragment).
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Os10g0534900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Prep (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 41.46 | 0.303 | 12.9 | 0.672 | 1.45 | -0.687 | 0.435 | -2.26 | 0.742 | 17 | 19.7 | 15 | -- | -- |
| 45.89 | 0.316 | 12.9 | 1.06 | 1.46 | -0.803 | -0.132 | -- | 0.859 | 17 | 20.35 | 17 | -- | -- |
| 41.87 | 0.301 | 12.9 | 0.712 | 1.45 | -0.683 | -- | -2 | 0.754 | 17 | 19.69 | 14 | -- | -- |
| 45.93 | 0.316 | 12.9 | 1.05 | 1.46 | -0.803 | -- | -- | 0.856 | 17 | 20.38 | 17 | -- | -- |
| 112.48 | 0.494 | 13 | 0.397 | -- | 0.944 | -- | -2.36 | 0.564 | -- | 24.87 | 368 | -- | -- |
| 55.54 | 0.349 | 12.9 | 0.883 | 1.24 | -- | -0.187 | -- | 0.719 | 17.5 | -- | -- | -- | -- |
| 55.62 | 0.349 | 12.9 | 0.884 | 1.23 | -- | -- | -- | 0.718 | 17.5 | -- | -- | -- | -- |
| 119.25 | 0.509 | 12.9 | 0.72 | -- | 0.744 | -- | -- | 0.623 | -- | 24.98 | 370 | -- | -- |
| 72.85 | 0.4 | 12.9 | -- | 1.34 | -0.445 | -- | -- | 0.682 | 17.2 | 21.9 | 16 | -- | -- |
| 134.84 | 0.543 | 12.9 | 0.843 | -- | -- | -- | -- | 0.688 | -- | -- | -- | -- | -- |
| 76.21 | 0.408 | 13 | -- | 1.22 | -- | -- | -- | 0.62 | 17.5 | -- | -- | -- | -- |
| 132.8 | 0.537 | 12.9 | -- | -- | 0.837 | -- | -- | 0.544 | -- | 24.8 | 373 | -- | -- |
| 153.59 | 0.578 | 12.9 | -- | -- | -- | -- | -- | 0.594 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 40.29 | temperature | 20 | 10 | > th | dose dependent | rect. | 24 | 22 |
| 4 | 40.50 | temperature | 20 | 10 | > th | dose dependent | rect. | 2 | 20 |
| 6 | 40.53 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 21 |
| 28 | 41.25 | temperature | 30 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 38 | 41.54 | temperature | 20 | 10 | > th | dose dependent | no | NA | NA |
| 45 | 41.63 | temperature | 20 | 30 | > th | dose dependent | rect. | 15 | 23 |
| 46 | 41.65 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 55 | 41.70 | temperature | 20 | 30 | > th | dose dependent | rect. | 13 | 23 |
| 69 | 41.82 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 71 | 41.83 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 78 | 41.88 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 19 |
| 104 | 42.05 | temperature | 30 | 30 | < th | dose dependent | rect. | 20 | 22 |
| 106 | 42.07 | temperature | 20 | 30 | > th | dose dependent | rect. | 17 | 23 |
| 121 | 42.20 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 13 |
| 154 | 42.48 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 178 | 42.64 | temperature | 20 | 720 | > th | dose dependent | rect. | 22 | 14 |
| 185 | 42.67 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 195 | 42.75 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 17 |
| 200 | 42.79 | temperature | 30 | 30 | < th | dose dependent | rect. | 5 | 21 |
| 206 | 42.82 | temperature | 30 | 30 | < th | dose dependent | no | NA | NA |
| 224 | 42.92 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 227 | 42.93 | temperature | 20 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 241 | 43.01 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 245 | 43.03 | temperature | 30 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 267 | 43.16 | temperature | 20 | 30 | > th | dose dependent | sin | 1 | NA |
| 272 | 43.16 | temperature | 20 | 10 | > th | dose dependent | rect. | 19 | 23 |
| 294 | 43.25 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 297 | 43.26 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 310 | 43.30 | temperature | 20 | 720 | > th | dose dependent | sin | 8 | NA |
| 398 | 43.66 | temperature | 30 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 449 | 43.84 | temperature | 30 | 30 | < th | dose dependent | rect. | 5 | 13 |
| 453 | 43.85 | temperature | 30 | 90 | < th | dose independent | rect. | 5 | 13 |
| 707 | 44.47 | temperature | 20 | 10 | > th | dose dependent | rect. | 2 | 14 |
| 968 | 44.98 | radiation | 20 | 4320 | < th | dose independent | rect. | 15 | 1 |
| 970 | 44.98 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 19 |