Os01g0848400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Acid phosphatase/vanadium-dependent haloperoxidase family protein.
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Os01g0848400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Acid phosphatase/vanadium-dependent haloperoxidase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 42.57 | 0.307 | 9.73 | 1.38 | 0.757 | -0.877 | 0.839 | 2.28 | 0.641 | 1.73 | 16.5 | 281 | -- | -- |
| 45.45 | 0.314 | 9.77 | 0.985 | 0.693 | -1 | 0.357 | -- | 0.544 | 2.03 | 14.5 | 139 | -- | -- |
| 45.03 | 0.313 | 9.73 | 1.4 | 0.805 | -0.91 | -- | 2.52 | 0.629 | 1.61 | 15.4 | 360 | -- | -- |
| 45.91 | 0.316 | 9.77 | 0.983 | 0.695 | -0.967 | -- | -- | 0.539 | 2.31 | 13.36 | 110 | -- | -- |
| 64.84 | 0.375 | 9.73 | 1.25 | -- | -1.58 | -- | 0.604 | 0.69 | -- | 16.9 | 64 | -- | -- |
| 54.29 | 0.345 | 9.8 | 0.795 | 0.96 | -- | 0.446 | -- | 0.406 | 2.5 | -- | -- | -- | -- |
| 54.97 | 0.347 | 9.8 | 0.783 | 0.963 | -- | -- | -- | 0.403 | 2.6 | -- | -- | -- | -- |
| 65.2 | 0.376 | 9.74 | 1.15 | -- | -1.62 | -- | -- | 0.66 | -- | 15.97 | 63 | -- | -- |
| 67.95 | 0.386 | 9.82 | -- | 0.818 | -0.45 | -- | -- | 0.332 | 2.56 | 25.72 | 67 | -- | -- |
| 109.28 | 0.488 | 9.79 | 0.824 | -- | -- | -- | -- | 0.428 | -- | -- | -- | -- | -- |
| 71.11 | 0.394 | 9.82 | -- | 0.978 | -- | -- | -- | 0.316 | 2.61 | -- | -- | -- | -- |
| 92.26 | 0.447 | 9.79 | -- | -- | -1.17 | -- | -- | 0.444 | -- | 24.2 | 12 | -- | -- |
| 127.18 | 0.526 | 9.82 | -- | -- | -- | -- | -- | 0.336 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 40.50 | temperature | 10 | 270 | > th | dose dependent | rect. | 9 | 22 |
| 5 | 41.02 | temperature | 15 | 90 | > th | dose dependent | sin | 21 | NA |
| 6 | 41.08 | temperature | 15 | 270 | > th | dose dependent | sin | 23 | NA |
| 11 | 41.30 | temperature | 15 | 270 | > th | dose dependent | rect. | 9 | 9 |
| 35 | 41.95 | temperature | 20 | 270 | > th | dose dependent | rect. | 21 | 21 |
| 46 | 42.08 | temperature | 15 | 10 | > th | dose dependent | rect. | 12 | 16 |
| 54 | 42.15 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 12 |
| 110 | 42.64 | temperature | 15 | 270 | > th | dose dependent | rect. | 5 | 23 |
| 113 | 42.66 | temperature | 15 | 270 | > th | dose dependent | no | NA | NA |
| 115 | 42.68 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 22 |
| 129 | 42.81 | temperature | 15 | 30 | > th | dose dependent | rect. | 12 | 19 |
| 138 | 42.87 | temperature | 15 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 139 | 42.88 | temperature | 15 | 270 | > th | dose dependent | rect. | 10 | 16 |
| 147 | 42.94 | temperature | 30 | 270 | < th | dose dependent | rect. | 14 | 22 |
| 174 | 43.09 | temperature | 30 | 270 | < th | dose dependent | rect. | 4 | 17 |
| 209 | 43.28 | atmosphere | 1015 | 10 | < th | dose dependent | rect. | 12 | 16 |
| 211 | 43.29 | temperature | 30 | 90 | < th | dose dependent | rect. | 7 | 16 |
| 213 | 43.30 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 19 |
| 243 | 43.39 | temperature | 30 | 270 | < th | dose dependent | sin | 1 | NA |
| 244 | 43.39 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 16 |
| 248 | 43.40 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 23 |
| 253 | 43.42 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 18 |
| 255 | 43.42 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 21 |
| 290 | 43.55 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 314 | 43.59 | temperature | 30 | 270 | < th | dose dependent | rect. | 20 | 23 |
| 341 | 43.69 | temperature | 20 | 30 | > th | dose independent | rect. | 12 | 19 |
| 393 | 43.86 | temperature | 30 | 90 | < th | dose dependent | sin | 22 | NA |
| 429 | 43.93 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 18 |
| 461 | 44.03 | temperature | 20 | 10 | > th | dose independent | rect. | 12 | 16 |
| 499 | 44.10 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 14 |
| 537 | 44.16 | temperature | 30 | 270 | < th | dose dependent | rect. | 4 | 13 |
| 558 | 44.20 | temperature | 30 | 270 | < th | dose dependent | rect. | 4 | 11 |
| 571 | 44.21 | atmosphere | 995 | 30 | > th | dose dependent | rect. | 18 | 18 |
| 579 | 44.23 | humidity | 90 | 270 | < th | dose independent | rect. | 9 | 9 |
| 580 | 44.23 | temperature | 20 | 270 | > th | dose independent | rect. | 10 | 21 |
| 581 | 44.23 | temperature | 15 | 10 | > th | dose dependent | rect. | 12 | 10 |
| 593 | 44.25 | temperature | 30 | 270 | < th | dose dependent | rect. | 4 | 9 |
| 615 | 44.28 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 17 |
| 672 | 44.36 | temperature | 20 | 720 | < th | dose independent | rect. | 22 | 18 |
| 737 | 44.45 | temperature | 15 | 10 | > th | dose dependent | rect. | 12 | 8 |
| 751 | 44.47 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 19 |
| 806 | 44.53 | temperature | 20 | 270 | > th | dose independent | rect. | 10 | 8 |
| 831 | 44.57 | temperature | 30 | 720 | < th | dose dependent | sin | 6 | NA |
| 877 | 44.62 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 17 |
| 879 | 44.62 | atmosphere | 1015 | 30 | < th | dose dependent | rect. | 12 | 19 |
| 933 | 44.68 | humidity | 90 | 10 | < th | dose dependent | rect. | 12 | 10 |
| 988 | 44.73 | temperature | 20 | 720 | > th | dose independent | sin | 2 | NA |