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Os12g0636200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Prep (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.6 (0.017) R2 : 0.000699
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0202 (0.0357) R2dN8 : 0.000902 R2N8 : 0.000699
σ : 0.32
deviance : 46.93
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
18.96 0.205 12.6 0.402 0.509 0.49 0.00371 -0.168 0.143 5.07 29.25 223 -- --
18.99 0.203 12.6 0.379 0.507 0.49 -0.0447 -- 0.131 5.08 29.1 222 -- --
18.96 0.203 12.6 0.401 0.51 0.49 -- -0.164 0.143 5.07 29.2 222 -- --
18.99 0.203 12.6 0.372 0.509 0.491 -- -- 0.136 5.06 29 224 -- --
28.69 0.249 12.6 0.532 -- 1.06 -- -0.332 0.203 -- 39.61 240 -- --
22.29 0.221 12.6 0.246 0.655 -- 0.0175 -- 0.0333 4.83 -- -- -- --
22.29 0.221 12.6 0.246 0.656 -- -- -- 0.0332 4.83 -- -- -- --
28.63 0.249 12.6 0.464 -- 0.989 -- -- 0.207 -- 31.53 232 -- --
22.37 0.22 12.6 -- 0.559 0.366 -- -- 0.0483 4.96 49.21 192 -- --
44.99 0.313 12.6 0.271 -- -- -- -- 0.0502 -- -- -- -- --
23.89 0.229 12.6 -- 0.66 -- -- -- 0.00581 4.82 -- -- -- --
34.49 0.274 12.6 -- -- 0.885 -- -- 0.118 -- 57.63 234 -- --
46.93 0.32 12.6 -- -- -- -- -- 0.0202 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 17.59 humidity 90 14400 < th dose independent rect. 23 8
2 17.60 humidity 80 14400 > th dose dependent rect. 24 7
9 17.72 humidity 80 14400 > th dose dependent rect. 5 2
15 17.77 humidity 90 14400 < th dose independent rect. 23 2
21 17.80 humidity 80 14400 > th dose dependent rect. 24 3
39 17.91 humidity 90 14400 < th dose independent rect. 4 3
53 18.00 humidity 50 14400 > th dose dependent rect. 24 3
67 18.05 radiation 10 4320 > th dose independent rect. 5 3
82 18.05 humidity 50 14400 > th dose dependent rect. 23 8
95 18.07 humidity 50 14400 > th dose dependent rect. 5 2
104 18.09 radiation 10 4320 < th dose independent rect. 17 15
105 18.10 humidity 90 14400 > th dose independent rect. 24 1
109 18.11 humidity 70 43200 < th dose independent rect. 17 21
119 18.12 humidity 70 43200 < th dose independent rect. 15 21
130 18.13 humidity 70 43200 > th dose independent rect. 17 22
137 18.14 radiation 10 4320 < th dose independent rect. 5 3
138 18.14 radiation 10 4320 < th dose independent rect. 19 13
139 18.14 humidity 70 43200 > th dose independent rect. 16 20
147 18.15 wind 1 14400 > th dose independent rect. 21 4
167 18.15 humidity 80 43200 < th dose dependent rect. 17 4
174 18.15 humidity 80 43200 < th dose dependent rect. 7 12
179 18.16 humidity 70 43200 < th dose independent rect. 18 2
180 18.16 humidity 60 43200 > th dose independent rect. 12 13
196 18.16 humidity 80 43200 < th dose dependent rect. 18 1
219 18.17 humidity 70 43200 > th dose independent rect. 6 6
220 18.17 humidity 70 43200 < th dose independent rect. 6 6
222 18.17 humidity 60 43200 < th dose independent rect. 12 11
243 18.17 humidity 80 43200 < th dose dependent sin 18 NA
257 18.17 humidity 80 43200 < th dose dependent rect. 12 11
278 18.18 humidity 70 43200 < th dose independent sin 15 NA
279 18.18 humidity 70 43200 < th dose independent no NA NA
280 18.18 humidity 90 14400 > th dose independent rect. 5 1
284 18.18 humidity 70 43200 < th dose independent rect. 16 8
290 18.18 humidity 70 43200 < th dose independent rect. 7 19
296 18.18 humidity 70 43200 < th dose independent rect. 4 21
306 18.18 humidity 70 43200 < th dose independent rect. 1 23
314 18.18 humidity 70 43200 < th dose independent rect. 11 23
316 18.18 humidity 70 43200 < th dose independent rect. 20 23
317 18.18 humidity 70 43200 < th dose independent rect. 22 23
322 18.18 humidity 90 43200 < th dose dependent rect. 20 1
328 18.18 humidity 80 43200 < th dose dependent rect. 12 9
370 18.19 humidity 70 43200 > th dose independent no NA NA
373 18.19 humidity 70 43200 > th dose independent rect. 18 3
392 18.19 humidity 70 43200 > th dose independent rect. 6 20
397 18.19 humidity 70 43200 > th dose independent rect. 4 21
421 18.19 humidity 70 43200 > th dose independent rect. 11 23
427 18.19 humidity 50 43200 > th dose dependent rect. 20 1
428 18.19 humidity 80 43200 < th dose dependent rect. 12 2
430 18.19 humidity 70 43200 < th dose dependent rect. 12 6
472 18.19 humidity 80 43200 < th dose dependent rect. 12 22
479 18.20 humidity 90 14400 > th dose independent rect. 23 8
513 18.20 humidity 70 43200 > th dose independent rect. 20 23
520 18.20 humidity 50 43200 > th dose dependent rect. 8 1
536 18.20 temperature 25 270 < th dose dependent rect. 8 15
545 18.20 humidity 80 43200 < th dose dependent rect. 13 20
562 18.21 humidity 70 43200 > th dose independent sin 15 NA
563 18.21 humidity 70 43200 > th dose independent sin 4 NA
568 18.21 wind 1 14400 < th dose independent rect. 21 4
614 18.21 wind 1 14400 < th dose dependent rect. 21 4
665 18.22 humidity 70 43200 < th dose independent sin 4 NA
683 18.22 humidity 70 43200 > th dose independent rect. 16 8
730 18.22 humidity 80 43200 < th dose dependent no NA NA
808 18.23 humidity 70 43200 > th dose independent rect. 23 16
837 18.23 humidity 90 43200 < th dose dependent rect. 8 1
843 18.23 radiation 10 4320 > th dose dependent rect. 6 2
976 18.24 wind 5 43200 > th dose dependent rect. 18 1
990 18.24 wind 1 14400 < th dose dependent rect. 19 7