BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0114500 Os12g0114500|AK104981
(119 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0114500 Similar to Nonspecific lipid-transfer protein ... 196 3e-51
AK102455 196 3e-51
Os11g0114900 Similar to Nonspecific lipid-transfer protein ... 189 3e-49
Os02g0445300 144 2e-35
Os12g0115000 Similar to Lipid transfer protein LPT II 103 4e-23
AK059819 103 4e-23
Os11g0427800 Similar to Lipid transfer protein LPT III 102 6e-23
AK061740 100 4e-22
Os12g0115100 Nonspecific lipid-transfer protein 1 precursor... 98 2e-21
AK059808 98 2e-21
Os12g0115300 Plant lipid transfer protein/Par allergen fami... 97 2e-21
Os11g0116000 Similar to Nonspecific lipid-transfer protein ... 97 2e-21
AK070192 97 2e-21
D10955 97 3e-21
Os11g0115400 Lipid transfer protein LPT IV 97 3e-21
Os11g0116200 Similar to Nonspecific lipid-transfer protein ... 96 4e-21
Os12g0114800 Similar to Lipid transfer protein 84 2e-17
Os11g0115100 Similar to Lipid transfer protein 84 2e-17
Os12g0115500 Plant lipid transfer protein/Par allergen fami... 79 7e-16
Os08g0131200 Plant lipid transfer protein/Par allergen fami... 78 1e-15
AK058805 77 3e-15
Os06g0539500 75 2e-14
Os05g0477900 Similar to Nonspecific lipid-transfer protein ... 70 5e-13
Os01g0219500 Plant lipid transfer protein/Par allergen fami... 65 9e-12
Os01g0822900 Similar to Lipid transfer protein 63 4e-11
>Os12g0114500 Similar to Nonspecific lipid-transfer protein (LTP) (Fragment)
Length = 119
Score = 196 bits (498), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 100/119 (84%), Positives = 100/119 (84%)
Query: 1 MARAANNKYXXXXXXXXXXXXXXXXXXXTCGQVVSMLAPCIMYATGRVSAPTGGCCDGVR 60
MARAANNKY TCGQVVSMLAPCIMYATGRVSAPTGGCCDGVR
Sbjct: 1 MARAANNKYVAAVMVVALLLAAPAASAVTCGQVVSMLAPCIMYATGRVSAPTGGCCDGVR 60
Query: 61 TLNSAAATTADRQTTCACLKQQTSAMGGLRPDLVAGIPSKCGVNIPYAISPSTDCSRVH 119
TLNSAAATTADRQTTCACLKQQTSAMGGLRPDLVAGIPSKCGVNIPYAISPSTDCSRVH
Sbjct: 61 TLNSAAATTADRQTTCACLKQQTSAMGGLRPDLVAGIPSKCGVNIPYAISPSTDCSRVH 119
>AK102455
Length = 119
Score = 196 bits (498), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 100/119 (84%), Positives = 100/119 (84%)
Query: 1 MARAANNKYXXXXXXXXXXXXXXXXXXXTCGQVVSMLAPCIMYATGRVSAPTGGCCDGVR 60
MARAANNKY TCGQVVSMLAPCIMYATGRVSAPTGGCCDGVR
Sbjct: 1 MARAANNKYVAAVMVVALLLAAPAASAVTCGQVVSMLAPCIMYATGRVSAPTGGCCDGVR 60
Query: 61 TLNSAAATTADRQTTCACLKQQTSAMGGLRPDLVAGIPSKCGVNIPYAISPSTDCSRVH 119
TLNSAAATTADRQTTCACLKQQTSAMGGLRPDLVAGIPSKCGVNIPYAISPSTDCSRVH
Sbjct: 61 TLNSAAATTADRQTTCACLKQQTSAMGGLRPDLVAGIPSKCGVNIPYAISPSTDCSRVH 119
>Os11g0114900 Similar to Nonspecific lipid-transfer protein (LTP) (Fragment)
Length = 119
Score = 189 bits (481), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 97/119 (81%), Positives = 97/119 (81%)
Query: 1 MARAANNKYXXXXXXXXXXXXXXXXXXXTCGQVVSMLAPCIMYATGRVSAPTGGCCDGVR 60
MAR ANN Y TCGQVVSMLAPCIMYATGRVSAPTGGCCDGVR
Sbjct: 1 MARPANNNYAAAVMVVALLVAAPAASAVTCGQVVSMLAPCIMYATGRVSAPTGGCCDGVR 60
Query: 61 TLNSAAATTADRQTTCACLKQQTSAMGGLRPDLVAGIPSKCGVNIPYAISPSTDCSRVH 119
TLNSAAATTADRQTTCACLKQQTSAMGGLRPDLVAGIPSKC VNIPYAISPSTDCSRVH
Sbjct: 61 TLNSAAATTADRQTTCACLKQQTSAMGGLRPDLVAGIPSKCDVNIPYAISPSTDCSRVH 119
>Os02g0445300
Length = 75
Score = 144 bits (362), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 72/78 (92%), Positives = 73/78 (93%), Gaps = 3/78 (3%)
Query: 42 MYATGRVSAPTGGCCDGVRTLNSAAATTADRQTTCACLKQQTSAMGGLRPDLVAGIPSKC 101
MYATGRVSAPTGGCCDGVRTLNSAAA D QTTCAC+KQQTS MGGLRPDLVAGIPSKC
Sbjct: 1 MYATGRVSAPTGGCCDGVRTLNSAAA---DHQTTCACIKQQTSGMGGLRPDLVAGIPSKC 57
Query: 102 GVNIPYAISPSTDCSRVH 119
GVNIPYAISPSTDCSRVH
Sbjct: 58 GVNIPYAISPSTDCSRVH 75
>Os12g0115000 Similar to Lipid transfer protein LPT II
Length = 110
Score = 103 bits (256), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 53/91 (58%), Positives = 64/91 (70%), Gaps = 1/91 (1%)
Query: 29 TCGQVVSMLAPCIMYATGRVSAPTGGCCDGVRTLNSAAATTADRQTTCACLKQQTSAMGG 88
+CGQV S ++PC+ YA G S P+ CC GVR+LNSAA TTADR+T C CLK ++ G
Sbjct: 21 SCGQVNSAVSPCLSYARGG-SGPSAACCSGVRSLNSAATTTADRRTACNCLKNVAGSISG 79
Query: 89 LRPDLVAGIPSKCGVNIPYAISPSTDCSRVH 119
L A IPSKCGV+IPY ISPS DCS V+
Sbjct: 80 LNAGNAASIPSKCGVSIPYTISPSIDCSSVN 110
>AK059819
Length = 117
Score = 103 bits (256), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 53/91 (58%), Positives = 64/91 (70%), Gaps = 1/91 (1%)
Query: 29 TCGQVVSMLAPCIMYATGRVSAPTGGCCDGVRTLNSAAATTADRQTTCACLKQQTSAMGG 88
+CGQV S ++PC+ YA G S P+ CC GVR+LNSAA TTADR+T C CLK ++ G
Sbjct: 28 SCGQVNSAVSPCLSYARGG-SGPSAACCSGVRSLNSAATTTADRRTACNCLKNVAGSISG 86
Query: 89 LRPDLVAGIPSKCGVNIPYAISPSTDCSRVH 119
L A IPSKCGV+IPY ISPS DCS V+
Sbjct: 87 LNAGNAASIPSKCGVSIPYTISPSIDCSSVN 117
>Os11g0427800 Similar to Lipid transfer protein LPT III
Length = 117
Score = 102 bits (254), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 51/91 (56%), Positives = 61/91 (67%)
Query: 29 TCGQVVSMLAPCIMYATGRVSAPTGGCCDGVRTLNSAAATTADRQTTCACLKQQTSAMGG 88
TCGQV S + PC+ YA G + P+ CC+GVR+L SAA TTADR+T C CLK + G
Sbjct: 27 TCGQVNSAVGPCLTYARGGGAGPSAACCNGVRSLKSAARTTADRRTACNCLKNAARGIKG 86
Query: 89 LRPDLVAGIPSKCGVNIPYAISPSTDCSRVH 119
L A IPSKCGV++PY IS S DCSRV
Sbjct: 87 LNAGNAASIPSKCGVSVPYTISASIDCSRVR 117
>AK061740
Length = 118
Score = 99.8 bits (247), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 52/91 (57%), Positives = 63/91 (69%), Gaps = 1/91 (1%)
Query: 29 TCGQVVSMLAPCIMYATGRVSAPTGGCCDGVRTLNSAAATTADRQTTCACLKQQTSAMGG 88
TCGQV S +APCI Y TGR S T GCC+GV+ LN+AA TTADRQ C CLK ++
Sbjct: 29 TCGQVGSAIAPCISYVTGR-SGLTQGCCNGVKGLNNAARTTADRQAACRCLKSLAGSIKS 87
Query: 89 LRPDLVAGIPSKCGVNIPYAISPSTDCSRVH 119
L VAG+P KCGVN+ + IS STDC++V
Sbjct: 88 LNLGTVAGVPGKCGVNVGFPISLSTDCNKVS 118
>Os12g0115100 Nonspecific lipid-transfer protein 1 precursor (LTP 1) (PAPI)
Length = 116
Score = 97.8 bits (242), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/90 (55%), Positives = 61/90 (67%), Gaps = 1/90 (1%)
Query: 29 TCGQVVSMLAPCIMYATGRVSAPTGGCCDGVRTLNSAAATTADRQTTCACLKQQTSAMGG 88
TCGQV S + PC+ YA G + P+ CC GVR+L +AA+TTADR+T C CLK + G
Sbjct: 27 TCGQVNSAVGPCLTYARGG-AGPSAACCSGVRSLKAAASTTADRRTACNCLKNAARGIKG 85
Query: 89 LRPDLVAGIPSKCGVNIPYAISPSTDCSRV 118
L A IPSKCGV++PY IS S DCSRV
Sbjct: 86 LNAGNAASIPSKCGVSVPYTISASIDCSRV 115
>AK059808
Length = 116
Score = 97.8 bits (242), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/90 (55%), Positives = 61/90 (67%), Gaps = 1/90 (1%)
Query: 29 TCGQVVSMLAPCIMYATGRVSAPTGGCCDGVRTLNSAAATTADRQTTCACLKQQTSAMGG 88
TCGQV S + PC+ YA G + P+ CC GVR+L +AA+TTADR+T C CLK + G
Sbjct: 27 TCGQVNSAVGPCLTYARGG-AGPSAACCSGVRSLKAAASTTADRRTACNCLKNAARGIKG 85
Query: 89 LRPDLVAGIPSKCGVNIPYAISPSTDCSRV 118
L A IPSKCGV++PY IS S DCSRV
Sbjct: 86 LNAGNAASIPSKCGVSVPYTISASIDCSRV 115
>Os12g0115300 Plant lipid transfer protein/Par allergen family protein
Length = 118
Score = 97.4 bits (241), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/91 (57%), Positives = 60/91 (65%), Gaps = 1/91 (1%)
Query: 29 TCGQVVSMLAPCIMYATGRVSAPTGGCCDGVRTLNSAAATTADRQTTCACLKQQTSAMGG 88
TCGQV S +APCI Y TGR T GCC+GV+ LN+AA TTADRQ C CLK +
Sbjct: 29 TCGQVGSAIAPCISYVTGR-GGLTQGCCNGVKGLNNAARTTADRQAACRCLKTLAGTIKS 87
Query: 89 LRPDLVAGIPSKCGVNIPYAISPSTDCSRVH 119
L AGIP KCGVN+ + IS STDCS+V
Sbjct: 88 LNLGAAAGIPGKCGVNVGFPISLSTDCSKVS 118
>Os11g0116000 Similar to Nonspecific lipid-transfer protein 1 (LTP 1) (Major
allergen Pru d 3)
Length = 118
Score = 97.4 bits (241), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/91 (57%), Positives = 60/91 (65%), Gaps = 1/91 (1%)
Query: 29 TCGQVVSMLAPCIMYATGRVSAPTGGCCDGVRTLNSAAATTADRQTTCACLKQQTSAMGG 88
TCGQV S +APCI Y TGR T GCC+GV+ LN+AA TTADRQ C CLK +
Sbjct: 29 TCGQVGSAIAPCISYVTGR-GGLTQGCCNGVKGLNNAARTTADRQAACRCLKTLAGTIKS 87
Query: 89 LRPDLVAGIPSKCGVNIPYAISPSTDCSRVH 119
L AGIP KCGVN+ + IS STDCS+V
Sbjct: 88 LNLGAAAGIPGKCGVNVGFPISLSTDCSKVS 118
>AK070192
Length = 118
Score = 97.4 bits (241), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/91 (57%), Positives = 60/91 (65%), Gaps = 1/91 (1%)
Query: 29 TCGQVVSMLAPCIMYATGRVSAPTGGCCDGVRTLNSAAATTADRQTTCACLKQQTSAMGG 88
TCGQV S +APCI Y TGR T GCC+GV+ LN+AA TTADRQ C CLK +
Sbjct: 29 TCGQVGSAIAPCISYVTGR-GGLTQGCCNGVKGLNNAARTTADRQAACRCLKTLAGTIKS 87
Query: 89 LRPDLVAGIPSKCGVNIPYAISPSTDCSRVH 119
L AGIP KCGVN+ + IS STDCS+V
Sbjct: 88 LNLGAAAGIPGKCGVNVGFPISLSTDCSKVS 118
>D10955
Length = 50
Score = 96.7 bits (239), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 46/50 (92%), Positives = 46/50 (92%)
Query: 70 ADRQTTCACLKQQTSAMGGLRPDLVAGIPSKCGVNIPYAISPSTDCSRVH 119
ADRQTTCACLKQQTSAMGGLR DLV GIPSKC VNIPY ISPSTDCSRVH
Sbjct: 1 ADRQTTCACLKQQTSAMGGLRXDLVXGIPSKCDVNIPYGISPSTDCSRVH 50
>Os11g0115400 Lipid transfer protein LPT IV
Length = 116
Score = 96.7 bits (239), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 49/90 (54%), Positives = 61/90 (67%), Gaps = 1/90 (1%)
Query: 29 TCGQVVSMLAPCIMYATGRVSAPTGGCCDGVRTLNSAAATTADRQTTCACLKQQTSAMGG 88
TCGQV S + PC+ YA G + P+ CC GVR+L +AA++TADR+T C CLK + G
Sbjct: 27 TCGQVNSAVGPCLTYARGG-AGPSAACCSGVRSLKAAASSTADRRTACNCLKNAARGIKG 85
Query: 89 LRPDLVAGIPSKCGVNIPYAISPSTDCSRV 118
L A IPSKCGV++PY IS S DCSRV
Sbjct: 86 LNAGNAASIPSKCGVSVPYTISASIDCSRV 115
>Os11g0116200 Similar to Nonspecific lipid-transfer protein 1 (LTP 1) (Major
allergen Pru d 3)
Length = 132
Score = 96.3 bits (238), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 51/88 (57%), Positives = 61/88 (69%), Gaps = 1/88 (1%)
Query: 29 TCGQVVSMLAPCIMYATGRVSAPTGGCCDGVRTLNSAAATTADRQTTCACLKQQTSAMGG 88
TCGQV S +APCI Y TGR S T GCC+GV+ LN+AA TTADRQ C CLK ++
Sbjct: 29 TCGQVGSAIAPCISYVTGR-SGLTQGCCNGVKGLNNAARTTADRQAACRCLKSLAGSIKS 87
Query: 89 LRPDLVAGIPSKCGVNIPYAISPSTDCS 116
L VAG+P KCGVN+ + IS STDC+
Sbjct: 88 LNLGTVAGVPGKCGVNVGFPISLSTDCN 115
>Os12g0114800 Similar to Lipid transfer protein
Length = 121
Score = 84.3 bits (207), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/91 (49%), Positives = 62/91 (68%)
Query: 29 TCGQVVSMLAPCIMYATGRVSAPTGGCCDGVRTLNSAAATTADRQTTCACLKQQTSAMGG 88
+CG V S +APC+ Y GR S+P+ CC GVRTLN A+++ADR+T C+CLK S+
Sbjct: 31 SCGDVTSSIAPCLSYVMGRESSPSSSCCSGVRTLNGKASSSADRRTACSCLKNMASSFRN 90
Query: 89 LRPDLVAGIPSKCGVNIPYAISPSTDCSRVH 119
L A IPSKCGV++ + IS S DCS+++
Sbjct: 91 LNMGNAASIPSKCGVSVAFPISTSVDCSKIN 121
>Os11g0115100 Similar to Lipid transfer protein
Length = 121
Score = 84.3 bits (207), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/91 (49%), Positives = 62/91 (68%)
Query: 29 TCGQVVSMLAPCIMYATGRVSAPTGGCCDGVRTLNSAAATTADRQTTCACLKQQTSAMGG 88
+CG V S +APC+ Y GR S+P+ CC GVRTLN A+++ADR+T C+CLK S+
Sbjct: 31 SCGDVTSSIAPCLSYVMGRESSPSSSCCSGVRTLNGKASSSADRRTACSCLKNMASSFRN 90
Query: 89 LRPDLVAGIPSKCGVNIPYAISPSTDCSRVH 119
L A IPSKCGV++ + IS S DCS+++
Sbjct: 91 LNMGNAASIPSKCGVSVAFPISTSVDCSKIN 121
>Os12g0115500 Plant lipid transfer protein/Par allergen family protein
Length = 93
Score = 79.0 bits (193), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 52/78 (66%), Gaps = 1/78 (1%)
Query: 41 IMYATGRVSAPTGGCCDGVRTLNSAAATTADRQTTCACLKQQTSAMGGLRPDLVAGIPSK 100
I+ GR S T GCC+GV+ LN+AA TTADRQ C CLK ++ L VAG+P K
Sbjct: 16 ILNMAGR-SGLTQGCCNGVKGLNNAARTTADRQAACRCLKSLAGSIKSLNLGTVAGVPGK 74
Query: 101 CGVNIPYAISPSTDCSRV 118
CGVN+ + IS STDC++V
Sbjct: 75 CGVNVGFPISLSTDCNKV 92
>Os08g0131200 Plant lipid transfer protein/Par allergen family protein
Length = 120
Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 54/90 (60%)
Query: 29 TCGQVVSMLAPCIMYATGRVSAPTGGCCDGVRTLNSAAATTADRQTTCACLKQQTSAMGG 88
TCG V + L PC+ Y TG+ +AP+G CC GVR L + TA+R+ C C+K+ + G
Sbjct: 30 TCGDVDASLLPCVAYLTGKAAAPSGDCCAGVRHLRTLPVGTAERRFACDCVKKAAARFKG 89
Query: 89 LRPDLVAGIPSKCGVNIPYAISPSTDCSRV 118
L D + +P+KC +P+ +S DC+ +
Sbjct: 90 LNGDAIRDLPAKCAAPLPFPLSLDFDCNTI 119
>AK058805
Length = 75
Score = 77.0 bits (188), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/82 (50%), Positives = 50/82 (60%), Gaps = 11/82 (13%)
Query: 37 LAPCIMYATGRVSAPTGGCCDGVRTLNSAAATTADRQTTCACLKQQTSAMGGLRPDLVAG 96
L PC+ YA G GVR+L +AA++TADR+T C CLK + GL A
Sbjct: 4 LGPCLTYARG-----------GVRSLKAAASSTADRRTACNCLKNAARGIKGLNAGNAAS 52
Query: 97 IPSKCGVNIPYAISPSTDCSRV 118
IPSKCGV++PY IS S DCSRV
Sbjct: 53 IPSKCGVSVPYTISASIDCSRV 74
>Os06g0539500
Length = 136
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 29 TCGQVVSMLAPCIMYATGRVSAPTGGCCDGVRTLNSAAATTADRQTTCACLKQQTSA-MG 87
+C VV+ + PC+ + G P+G CCDG+ L +AAATT DRQ C CLK S
Sbjct: 47 SCSDVVADVTPCLGFLQGDDDHPSGECCDGLSGLVAAAATTEDRQAACECLKSAVSGQFT 106
Query: 88 GLRPDLVAGIPSKCGVNIPYAISPSTDCSR 117
+ +P+ CG+++PY SP DCS+
Sbjct: 107 AVEAAPARDLPADCGLSLPYTFSPDVDCSQ 136
>Os05g0477900 Similar to Nonspecific lipid-transfer protein 1 (LTP 1) (Major
allergen Pru d 3)
Length = 129
Score = 69.7 bits (169), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 56/92 (60%), Gaps = 2/92 (2%)
Query: 29 TCGQVVSMLAPCIMYATGRVSAPTGGCCDGVRTLNSAAATTADRQTTCACLKQQTS-AMG 87
+C V + L PC+ Y + P CC G+R++ +AA TTADR+ C CLK + A G
Sbjct: 39 SCSTVYNTLLPCLPYVQSGGAVPAA-CCGGIRSVVAAARTTADRRAACTCLKNVAAGAAG 97
Query: 88 GLRPDLVAGIPSKCGVNIPYAISPSTDCSRVH 119
G AG+P +CGV++P+ ISP+ +C+ V+
Sbjct: 98 GPYISRAAGLPGRCGVSVPFKISPNVNCNAVN 129
>Os01g0219500 Plant lipid transfer protein/Par allergen family protein
Length = 127
Score = 65.5 bits (158), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 30 CGQVVSMLAPCIMYATGRVS-APTGGCCDGVRTLNSAAATTADRQTTCACLKQQTSAMGG 88
CGQV+ ++APC+ Y G P G CCD + LN A ADR C C+K +
Sbjct: 32 CGQVMQLMAPCMPYLAGAPGMTPYGICCDSLGVLNRMAPAPADRVAVCNCVKDAAAGFPA 91
Query: 89 LRPDLVAGIPSKCGVNIPYAISPSTDCSRV 118
+ + +P+ CG++I + I+P+ DC++V
Sbjct: 92 VDFSRASALPAACGLSISFTIAPNMDCNQV 121
>Os01g0822900 Similar to Lipid transfer protein
Length = 120
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 52/92 (56%), Gaps = 2/92 (2%)
Query: 29 TCGQVVSMLAPCIMYATGRVSAPTGGCCDGVRTLNSAAATTADRQTTCACLKQ-QTSAMG 87
+C V + L PC+ Y + P CC G+++L +AA T DR+T C CLK A G
Sbjct: 30 SCSAVYNTLMPCLPYVQAGGTVPRA-CCGGIQSLLAAANNTPDRRTICGCLKNVANGASG 88
Query: 88 GLRPDLVAGIPSKCGVNIPYAISPSTDCSRVH 119
G A +PSKC V++PY IS S +C+ ++
Sbjct: 89 GPYITRAAALPSKCNVSLPYKISTSVNCNAIN 120
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.129 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,387,057
Number of extensions: 113032
Number of successful extensions: 397
Number of sequences better than 1.0e-10: 26
Number of HSP's gapped: 382
Number of HSP's successfully gapped: 26
Length of query: 119
Length of database: 17,035,801
Length adjustment: 85
Effective length of query: 34
Effective length of database: 12,597,611
Effective search space: 428318774
Effective search space used: 428318774
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 149 (62.0 bits)