Os11g0427800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Lipid transfer protein LPT III.
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Os11g0427800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Lipid transfer protein LPT III.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 89.55 | 0.445 | 14.6 | -2.95 | 1 | 0.974 | 0.43 | -4.25 | -0.332 | 7.82 | 19.24 | 1674 | -- | -- |
| 105.21 | 0.478 | 14.5 | -2.02 | 0.948 | 1.05 | 0.347 | -- | -0.13 | 8.05 | 12.5 | 10242 | -- | -- |
| 89.92 | 0.442 | 14.6 | -3.01 | 1.01 | 0.99 | -- | -4.48 | -0.359 | 7.9 | 19.69 | 1730 | -- | -- |
| 105.56 | 0.479 | 14.5 | -2.05 | 0.961 | 1.05 | -- | -- | -0.143 | 8.08 | 11.7 | 10306 | -- | -- |
| 143.55 | 0.558 | 14.6 | -2.96 | -- | 0.785 | -- | -4.32 | -0.296 | -- | 18.3 | 4397 | -- | -- |
| 123.14 | 0.52 | 14.4 | -1.46 | 0.958 | -- | 0.467 | -- | 0.179 | 7.84 | -- | -- | -- | -- |
| 123.72 | 0.521 | 14.4 | -1.44 | 0.956 | -- | -- | -- | 0.179 | 7.95 | -- | -- | -- | -- |
| 155.37 | 0.581 | 14.5 | -2.05 | -- | 1.05 | -- | -- | -0.139 | -- | 10.5 | 10144 | -- | -- |
| 151.37 | 0.573 | 14.3 | -- | 0.939 | -0.757 | -- | -- | 0.624 | 7.98 | 21.5 | 47520 | -- | -- |
| 173.54 | 0.616 | 14.4 | -1.43 | -- | -- | -- | -- | 0.192 | -- | -- | -- | -- | -- |
| 178.55 | 0.625 | 14.4 | -- | 0.947 | -- | -- | -- | 0.34 | 8.06 | -- | -- | -- | -- |
| 200.19 | 0.659 | 14.3 | -- | -- | -0.771 | -- | -- | 0.639 | -- | 21 | 47520 | -- | -- |
| 227.67 | 0.704 | 14.4 | -- | -- | -- | -- | -- | 0.351 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 86.07 | temperature | 30 | 720 | < th | dose dependent | sin | 12 | NA |
| 2 | 86.15 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 14 |
| 3 | 86.28 | temperature | 30 | 720 | < th | dose dependent | rect. | 16 | 16 |
| 9 | 86.99 | temperature | 10 | 720 | > th | dose dependent | sin | 10 | NA |
| 16 | 87.50 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 17 |
| 22 | 87.69 | temperature | 20 | 720 | > th | dose dependent | sin | 9 | NA |
| 23 | 87.82 | temperature | 20 | 720 | > th | dose dependent | rect. | 20 | 14 |
| 32 | 88.19 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 10 |
| 61 | 88.87 | temperature | 10 | 720 | > th | dose dependent | rect. | 20 | 11 |
| 65 | 88.94 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 15 |
| 87 | 89.27 | temperature | 20 | 1440 | > th | dose dependent | sin | 13 | NA |
| 124 | 89.65 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 19 |
| 159 | 89.99 | temperature | 25 | 4320 | < th | dose independent | rect. | 12 | 1 |
| 193 | 90.20 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 5 |
| 195 | 90.21 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 2 |
| 223 | 90.41 | temperature | 20 | 1440 | > th | dose dependent | rect. | 19 | 2 |
| 265 | 90.61 | humidity | 90 | 14400 | > th | dose independent | rect. | 21 | 7 |
| 272 | 90.65 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 6 |
| 276 | 90.66 | radiation | 1 | 43200 | < th | dose independent | rect. | 16 | 2 |
| 280 | 90.67 | radiation | 1 | 43200 | < th | dose independent | rect. | 16 | 9 |
| 285 | 90.68 | temperature | 25 | 4320 | > th | dose independent | rect. | 16 | 1 |
| 288 | 90.68 | radiation | 1 | 43200 | < th | dose independent | rect. | 16 | 6 |
| 328 | 90.80 | temperature | 25 | 4320 | < th | dose independent | rect. | 15 | 3 |
| 331 | 90.83 | temperature | 25 | 4320 | < th | dose independent | rect. | 10 | 8 |
| 345 | 90.87 | temperature | 25 | 4320 | > th | dose independent | rect. | 15 | 3 |
| 357 | 90.89 | radiation | 1 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 367 | 90.89 | radiation | 1 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 370 | 90.90 | radiation | 1 | 43200 | > th | dose independent | rect. | 16 | 3 |
| 397 | 90.94 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 401 | 90.95 | temperature | 25 | 4320 | > th | dose independent | rect. | 12 | 1 |
| 425 | 91.03 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 2 | 2 |
| 426 | 91.03 | temperature | 25 | 4320 | > th | dose independent | rect. | 11 | 7 |
| 439 | 91.05 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 23 |
| 446 | 91.07 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 2 | 2 |
| 450 | 91.08 | temperature | 25 | 4320 | < th | dose independent | rect. | 5 | 13 |
| 457 | 91.09 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 1 | 4 |
| 477 | 91.12 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 23 |
| 478 | 91.13 | radiation | 1 | 43200 | < th | dose independent | sin | 15 | NA |
| 481 | 91.13 | temperature | 25 | 4320 | < th | dose independent | rect. | 16 | 1 |
| 509 | 91.16 | radiation | 1 | 43200 | < th | dose independent | rect. | 8 | 10 |
| 514 | 91.17 | radiation | 1 | 43200 | < th | dose independent | rect. | 7 | 23 |
| 521 | 91.18 | radiation | 1 | 43200 | < th | dose independent | rect. | 16 | 18 |
| 522 | 91.18 | radiation | 1 | 43200 | < th | dose independent | rect. | 8 | 19 |
| 529 | 91.19 | radiation | 1 | 43200 | < th | dose independent | rect. | 8 | 14 |
| 576 | 91.23 | radiation | 1 | 14400 | < th | dose dependent | rect. | 21 | 9 |
| 581 | 91.24 | humidity | 90 | 14400 | > th | dose dependent | rect. | 24 | 1 |
| 582 | 91.24 | radiation | 1 | 14400 | < th | dose dependent | rect. | 23 | 7 |
| 585 | 91.25 | radiation | 1 | 43200 | > th | dose independent | rect. | 7 | 11 |
| 625 | 91.27 | radiation | 1 | 14400 | < th | dose dependent | rect. | 2 | 4 |
| 677 | 91.31 | radiation | 1 | 43200 | > th | dose independent | rect. | 16 | 19 |
| 679 | 91.31 | radiation | 1 | 43200 | > th | dose independent | rect. | 7 | 23 |
| 729 | 91.37 | radiation | 1 | 43200 | < th | dose independent | rect. | 5 | 22 |
| 732 | 91.38 | radiation | 1 | 43200 | > th | dose independent | sin | 19 | NA |
| 733 | 91.38 | humidity | 70 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 739 | 91.38 | temperature | 25 | 4320 | > th | dose independent | rect. | 5 | 13 |
| 740 | 91.38 | radiation | 1 | 43200 | < th | dose independent | rect. | 5 | 14 |
| 773 | 91.41 | radiation | 1 | 43200 | < th | dose independent | no | NA | NA |
| 788 | 91.41 | radiation | 1 | 43200 | < th | dose independent | rect. | 1 | 18 |
| 818 | 91.41 | humidity | 90 | 14400 | > th | dose dependent | sin | 11 | NA |
| 853 | 91.43 | temperature | 25 | 4320 | > th | dose independent | rect. | 11 | 3 |
| 863 | 91.44 | radiation | 1 | 43200 | < th | dose independent | rect. | 10 | 23 |
| 872 | 91.45 | radiation | 1 | 43200 | < th | dose dependent | rect. | 16 | 3 |
| 874 | 91.45 | radiation | 1 | 43200 | < th | dose dependent | rect. | 16 | 6 |
| 878 | 91.45 | radiation | 1 | 43200 | < th | dose dependent | rect. | 16 | 11 |
| 936 | 91.50 | humidity | 90 | 14400 | > th | dose independent | rect. | 21 | 4 |
| 939 | 91.50 | radiation | 1 | 43200 | > th | dose independent | rect. | 5 | 14 |