BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0427800 Os11g0427800|AK061288
(117 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0427800 Similar to Lipid transfer protein LPT III 155 7e-39
Os12g0115100 Nonspecific lipid-transfer protein 1 precursor... 144 1e-35
AK059808 144 1e-35
Os11g0115400 Lipid transfer protein LPT IV 144 1e-35
AK059819 124 2e-29
Os12g0115000 Similar to Lipid transfer protein LPT II 123 2e-29
AK058805 107 2e-24
Os12g0114500 Similar to Nonspecific lipid-transfer protein ... 86 5e-18
AK102455 86 5e-18
Os11g0114900 Similar to Nonspecific lipid-transfer protein ... 84 2e-17
Os12g0114800 Similar to Lipid transfer protein 83 5e-17
Os11g0115100 Similar to Lipid transfer protein 83 5e-17
Os12g0115300 Plant lipid transfer protein/Par allergen fami... 83 5e-17
Os11g0116000 Similar to Nonspecific lipid-transfer protein ... 82 6e-17
AK070192 82 6e-17
AK061740 78 1e-15
Os11g0116200 Similar to Nonspecific lipid-transfer protein ... 76 7e-15
Os08g0131200 Plant lipid transfer protein/Par allergen fami... 74 2e-14
Os06g0539500 69 7e-13
Os02g0445300 66 7e-12
Os01g0219500 Plant lipid transfer protein/Par allergen fami... 65 1e-11
Os05g0477900 Similar to Nonspecific lipid-transfer protein ... 65 1e-11
Os01g0822900 Similar to Lipid transfer protein 65 1e-11
>Os11g0427800 Similar to Lipid transfer protein LPT III
Length = 117
Score = 155 bits (392), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 81/92 (88%), Positives = 81/92 (88%)
Query: 26 ITCGQVNSAVGPCLTYARGGGAGPSAACCNGVRSLKSXXXXXXXXXXXCNCLKNAARGIK 85
ITCGQVNSAVGPCLTYARGGGAGPSAACCNGVRSLKS CNCLKNAARGIK
Sbjct: 26 ITCGQVNSAVGPCLTYARGGGAGPSAACCNGVRSLKSAARTTADRRTACNCLKNAARGIK 85
Query: 86 GLNAGNAASIPSKCGVSVPYTISASIDCSRVR 117
GLNAGNAASIPSKCGVSVPYTISASIDCSRVR
Sbjct: 86 GLNAGNAASIPSKCGVSVPYTISASIDCSRVR 117
>Os12g0115100 Nonspecific lipid-transfer protein 1 precursor (LTP 1) (PAPI)
Length = 116
Score = 144 bits (364), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 77/91 (84%), Positives = 79/91 (86%), Gaps = 1/91 (1%)
Query: 26 ITCGQVNSAVGPCLTYARGGGAGPSAACCNGVRSLKSXXXXXXXXXXXCNCLKNAARGIK 85
ITCGQVNSAVGPCLTYARGG AGPSAACC+GVRSLK+ CNCLKNAARGIK
Sbjct: 26 ITCGQVNSAVGPCLTYARGG-AGPSAACCSGVRSLKAAASTTADRRTACNCLKNAARGIK 84
Query: 86 GLNAGNAASIPSKCGVSVPYTISASIDCSRV 116
GLNAGNAASIPSKCGVSVPYTISASIDCSRV
Sbjct: 85 GLNAGNAASIPSKCGVSVPYTISASIDCSRV 115
>AK059808
Length = 116
Score = 144 bits (364), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 77/91 (84%), Positives = 79/91 (86%), Gaps = 1/91 (1%)
Query: 26 ITCGQVNSAVGPCLTYARGGGAGPSAACCNGVRSLKSXXXXXXXXXXXCNCLKNAARGIK 85
ITCGQVNSAVGPCLTYARGG AGPSAACC+GVRSLK+ CNCLKNAARGIK
Sbjct: 26 ITCGQVNSAVGPCLTYARGG-AGPSAACCSGVRSLKAAASTTADRRTACNCLKNAARGIK 84
Query: 86 GLNAGNAASIPSKCGVSVPYTISASIDCSRV 116
GLNAGNAASIPSKCGVSVPYTISASIDCSRV
Sbjct: 85 GLNAGNAASIPSKCGVSVPYTISASIDCSRV 115
>Os11g0115400 Lipid transfer protein LPT IV
Length = 116
Score = 144 bits (363), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 77/91 (84%), Positives = 79/91 (86%), Gaps = 1/91 (1%)
Query: 26 ITCGQVNSAVGPCLTYARGGGAGPSAACCNGVRSLKSXXXXXXXXXXXCNCLKNAARGIK 85
ITCGQVNSAVGPCLTYARGG AGPSAACC+GVRSLK+ CNCLKNAARGIK
Sbjct: 26 ITCGQVNSAVGPCLTYARGG-AGPSAACCSGVRSLKAAASSTADRRTACNCLKNAARGIK 84
Query: 86 GLNAGNAASIPSKCGVSVPYTISASIDCSRV 116
GLNAGNAASIPSKCGVSVPYTISASIDCSRV
Sbjct: 85 GLNAGNAASIPSKCGVSVPYTISASIDCSRV 115
>AK059819
Length = 117
Score = 124 bits (310), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 66/91 (72%), Positives = 71/91 (78%), Gaps = 1/91 (1%)
Query: 26 ITCGQVNSAVGPCLTYARGGGAGPSAACCNGVRSLKSXXXXXXXXXXXCNCLKNAARGIK 85
I+CGQVNSAV PCL+YARGG +GPSAACC+GVRSL S CNCLKN A I
Sbjct: 27 ISCGQVNSAVSPCLSYARGG-SGPSAACCSGVRSLNSAATTTADRRTACNCLKNVAGSIS 85
Query: 86 GLNAGNAASIPSKCGVSVPYTISASIDCSRV 116
GLNAGNAASIPSKCGVS+PYTIS SIDCS V
Sbjct: 86 GLNAGNAASIPSKCGVSIPYTISPSIDCSSV 116
>Os12g0115000 Similar to Lipid transfer protein LPT II
Length = 110
Score = 123 bits (309), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 66/91 (72%), Positives = 71/91 (78%), Gaps = 1/91 (1%)
Query: 26 ITCGQVNSAVGPCLTYARGGGAGPSAACCNGVRSLKSXXXXXXXXXXXCNCLKNAARGIK 85
I+CGQVNSAV PCL+YARGG +GPSAACC+GVRSL S CNCLKN A I
Sbjct: 20 ISCGQVNSAVSPCLSYARGG-SGPSAACCSGVRSLNSAATTTADRRTACNCLKNVAGSIS 78
Query: 86 GLNAGNAASIPSKCGVSVPYTISASIDCSRV 116
GLNAGNAASIPSKCGVS+PYTIS SIDCS V
Sbjct: 79 GLNAGNAASIPSKCGVSIPYTISPSIDCSSV 109
>AK058805
Length = 75
Score = 107 bits (267), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 59/83 (71%), Positives = 61/83 (73%), Gaps = 11/83 (13%)
Query: 34 AVGPCLTYARGGGAGPSAACCNGVRSLKSXXXXXXXXXXXCNCLKNAARGIKGLNAGNAA 93
A+GPCLTYARGG VRSLK+ CNCLKNAARGIKGLNAGNAA
Sbjct: 3 ALGPCLTYARGG-----------VRSLKAAASSTADRRTACNCLKNAARGIKGLNAGNAA 51
Query: 94 SIPSKCGVSVPYTISASIDCSRV 116
SIPSKCGVSVPYTISASIDCSRV
Sbjct: 52 SIPSKCGVSVPYTISASIDCSRV 74
>Os12g0114500 Similar to Nonspecific lipid-transfer protein (LTP) (Fragment)
Length = 119
Score = 86.3 bits (212), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 52/91 (57%)
Query: 27 TCGQVNSAVGPCLTYARGGGAGPSAACCNGVRSLKSXXXXXXXXXXXCNCLKNAARGIKG 86
TCGQV S + PC+ YA G + P+ CC+GVR+L S C CLK + G
Sbjct: 29 TCGQVVSMLAPCIMYATGRVSAPTGGCCDGVRTLNSAAATTADRQTTCACLKQQTSAMGG 88
Query: 87 LNAGNAASIPSKCGVSVPYTISASIDCSRVR 117
L A IPSKCGV++PY IS S DCSRV
Sbjct: 89 LRPDLVAGIPSKCGVNIPYAISPSTDCSRVH 119
>AK102455
Length = 119
Score = 86.3 bits (212), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 52/91 (57%)
Query: 27 TCGQVNSAVGPCLTYARGGGAGPSAACCNGVRSLKSXXXXXXXXXXXCNCLKNAARGIKG 86
TCGQV S + PC+ YA G + P+ CC+GVR+L S C CLK + G
Sbjct: 29 TCGQVVSMLAPCIMYATGRVSAPTGGCCDGVRTLNSAAATTADRQTTCACLKQQTSAMGG 88
Query: 87 LNAGNAASIPSKCGVSVPYTISASIDCSRVR 117
L A IPSKCGV++PY IS S DCSRV
Sbjct: 89 LRPDLVAGIPSKCGVNIPYAISPSTDCSRVH 119
>Os11g0114900 Similar to Nonspecific lipid-transfer protein (LTP) (Fragment)
Length = 119
Score = 84.0 bits (206), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/91 (46%), Positives = 51/91 (56%)
Query: 27 TCGQVNSAVGPCLTYARGGGAGPSAACCNGVRSLKSXXXXXXXXXXXCNCLKNAARGIKG 86
TCGQV S + PC+ YA G + P+ CC+GVR+L S C CLK + G
Sbjct: 29 TCGQVVSMLAPCIMYATGRVSAPTGGCCDGVRTLNSAAATTADRQTTCACLKQQTSAMGG 88
Query: 87 LNAGNAASIPSKCGVSVPYTISASIDCSRVR 117
L A IPSKC V++PY IS S DCSRV
Sbjct: 89 LRPDLVAGIPSKCDVNIPYAISPSTDCSRVH 119
>Os12g0114800 Similar to Lipid transfer protein
Length = 121
Score = 82.8 bits (203), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 45/90 (50%), Positives = 60/90 (66%)
Query: 27 TCGQVNSAVGPCLTYARGGGAGPSAACCNGVRSLKSXXXXXXXXXXXCNCLKNAARGIKG 86
+CG V S++ PCL+Y G + PS++CC+GVR+L C+CLKN A +
Sbjct: 31 SCGDVTSSIAPCLSYVMGRESSPSSSCCSGVRTLNGKASSSADRRTACSCLKNMASSFRN 90
Query: 87 LNAGNAASIPSKCGVSVPYTISASIDCSRV 116
LN GNAASIPSKCGVSV + IS S+DCS++
Sbjct: 91 LNMGNAASIPSKCGVSVAFPISTSVDCSKI 120
>Os11g0115100 Similar to Lipid transfer protein
Length = 121
Score = 82.8 bits (203), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 45/90 (50%), Positives = 60/90 (66%)
Query: 27 TCGQVNSAVGPCLTYARGGGAGPSAACCNGVRSLKSXXXXXXXXXXXCNCLKNAARGIKG 86
+CG V S++ PCL+Y G + PS++CC+GVR+L C+CLKN A +
Sbjct: 31 SCGDVTSSIAPCLSYVMGRESSPSSSCCSGVRTLNGKASSSADRRTACSCLKNMASSFRN 90
Query: 87 LNAGNAASIPSKCGVSVPYTISASIDCSRV 116
LN GNAASIPSKCGVSV + IS S+DCS++
Sbjct: 91 LNMGNAASIPSKCGVSVAFPISTSVDCSKI 120
>Os12g0115300 Plant lipid transfer protein/Par allergen family protein
Length = 118
Score = 82.8 bits (203), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 46/91 (50%), Positives = 55/91 (60%), Gaps = 1/91 (1%)
Query: 26 ITCGQVNSAVGPCLTYARGGGAGPSAACCNGVRSLKSXXXXXXXXXXXCNCLKNAARGIK 85
ITCGQV SA+ PC++Y G G G + CCNGV+ L + C CLK A IK
Sbjct: 28 ITCGQVGSAIAPCISYVTGRG-GLTQGCCNGVKGLNNAARTTADRQAACRCLKTLAGTIK 86
Query: 86 GLNAGNAASIPSKCGVSVPYTISASIDCSRV 116
LN G AA IP KCGV+V + IS S DCS+V
Sbjct: 87 SLNLGAAAGIPGKCGVNVGFPISLSTDCSKV 117
>Os11g0116000 Similar to Nonspecific lipid-transfer protein 1 (LTP 1) (Major
allergen Pru d 3)
Length = 118
Score = 82.4 bits (202), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 46/91 (50%), Positives = 55/91 (60%), Gaps = 1/91 (1%)
Query: 26 ITCGQVNSAVGPCLTYARGGGAGPSAACCNGVRSLKSXXXXXXXXXXXCNCLKNAARGIK 85
ITCGQV SA+ PC++Y G G G + CCNGV+ L + C CLK A IK
Sbjct: 28 ITCGQVGSAIAPCISYVTGRG-GLTQGCCNGVKGLNNAARTTADRQAACRCLKTLAGTIK 86
Query: 86 GLNAGNAASIPSKCGVSVPYTISASIDCSRV 116
LN G AA IP KCGV+V + IS S DCS+V
Sbjct: 87 SLNLGAAAGIPGKCGVNVGFPISLSTDCSKV 117
>AK070192
Length = 118
Score = 82.4 bits (202), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 46/91 (50%), Positives = 55/91 (60%), Gaps = 1/91 (1%)
Query: 26 ITCGQVNSAVGPCLTYARGGGAGPSAACCNGVRSLKSXXXXXXXXXXXCNCLKNAARGIK 85
ITCGQV SA+ PC++Y G G G + CCNGV+ L + C CLK A IK
Sbjct: 28 ITCGQVGSAIAPCISYVTGRG-GLTQGCCNGVKGLNNAARTTADRQAACRCLKTLAGTIK 86
Query: 86 GLNAGNAASIPSKCGVSVPYTISASIDCSRV 116
LN G AA IP KCGV+V + IS S DCS+V
Sbjct: 87 SLNLGAAAGIPGKCGVNVGFPISLSTDCSKV 117
>AK061740
Length = 118
Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/91 (46%), Positives = 55/91 (60%), Gaps = 1/91 (1%)
Query: 26 ITCGQVNSAVGPCLTYARGGGAGPSAACCNGVRSLKSXXXXXXXXXXXCNCLKNAARGIK 85
ITCGQV SA+ PC++Y G +G + CCNGV+ L + C CLK+ A IK
Sbjct: 28 ITCGQVGSAIAPCISYVTGR-SGLTQGCCNGVKGLNNAARTTADRQAACRCLKSLAGSIK 86
Query: 86 GLNAGNAASIPSKCGVSVPYTISASIDCSRV 116
LN G A +P KCGV+V + IS S DC++V
Sbjct: 87 SLNLGTVAGVPGKCGVNVGFPISLSTDCNKV 117
>Os11g0116200 Similar to Nonspecific lipid-transfer protein 1 (LTP 1) (Major
allergen Pru d 3)
Length = 132
Score = 75.9 bits (185), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 41/89 (46%), Positives = 53/89 (59%), Gaps = 1/89 (1%)
Query: 26 ITCGQVNSAVGPCLTYARGGGAGPSAACCNGVRSLKSXXXXXXXXXXXCNCLKNAARGIK 85
ITCGQV SA+ PC++Y G +G + CCNGV+ L + C CLK+ A IK
Sbjct: 28 ITCGQVGSAIAPCISYVTGR-SGLTQGCCNGVKGLNNAARTTADRQAACRCLKSLAGSIK 86
Query: 86 GLNAGNAASIPSKCGVSVPYTISASIDCS 114
LN G A +P KCGV+V + IS S DC+
Sbjct: 87 SLNLGTVAGVPGKCGVNVGFPISLSTDCN 115
>Os08g0131200 Plant lipid transfer protein/Par allergen family protein
Length = 120
Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 50/91 (54%)
Query: 26 ITCGQVNSAVGPCLTYARGGGAGPSAACCNGVRSLKSXXXXXXXXXXXCNCLKNAARGIK 85
+TCG V++++ PC+ Y G A PS CC GVR L++ C+C+K AA K
Sbjct: 29 VTCGDVDASLLPCVAYLTGKAAAPSGDCCAGVRHLRTLPVGTAERRFACDCVKKAAARFK 88
Query: 86 GLNAGNAASIPSKCGVSVPYTISASIDCSRV 116
GLN +P+KC +P+ +S DC+ +
Sbjct: 89 GLNGDAIRDLPAKCAAPLPFPLSLDFDCNTI 119
>Os06g0539500
Length = 136
Score = 68.9 bits (167), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 26 ITCGQVNSAVGPCLTYARGGGAGPSAACCNGVRSLKSXXXXXXXXXXXCNCLKNAARG-I 84
++C V + V PCL + +G PS CC+G+ L + C CLK+A G
Sbjct: 46 VSCSDVVADVTPCLGFLQGDDDHPSGECCDGLSGLVAAAATTEDRQAACECLKSAVSGQF 105
Query: 85 KGLNAGNAASIPSKCGVSVPYTISASIDCSR 115
+ A A +P+ CG+S+PYT S +DCS+
Sbjct: 106 TAVEAAPARDLPADCGLSLPYTFSPDVDCSQ 136
>Os02g0445300
Length = 75
Score = 65.9 bits (159), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 41 YARGGGAGPSAACCNGVRSLKSXXXXXXXXXXXCNCLKNAARGIKGLNAGNAASIPSKCG 100
YA G + P+ CC+GVR+L S C C+K G+ GL A IPSKCG
Sbjct: 2 YATGRVSAPTGGCCDGVRTLNSAAADHQTT---CACIKQQTSGMGGLRPDLVAGIPSKCG 58
Query: 101 VSVPYTISASIDCSRVR 117
V++PY IS S DCSRV
Sbjct: 59 VNIPYAISPSTDCSRVH 75
>Os01g0219500 Plant lipid transfer protein/Par allergen family protein
Length = 127
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Query: 26 ITCGQVNSAVGPCLTYARGG-GAGPSAACCNGVRSLKSXXXXXXXXXXXCNCLKNAARGI 84
+ CGQV + PC+ Y G G P CC+ + L CNC+K+AA G
Sbjct: 30 VQCGQVMQLMAPCMPYLAGAPGMTPYGICCDSLGVLNRMAPAPADRVAVCNCVKDAAAGF 89
Query: 85 KGLNAGNAASIPSKCGVSVPYTISASIDCSRV 116
++ A+++P+ CG+S+ +TI+ ++DC++V
Sbjct: 90 PAVDFSRASALPAACGLSISFTIAPNMDCNQV 121
>Os05g0477900 Similar to Nonspecific lipid-transfer protein 1 (LTP 1) (Major
allergen Pru d 3)
Length = 129
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 53/92 (57%), Gaps = 2/92 (2%)
Query: 26 ITCGQVNSAVGPCLTYARGGGAGPSAACCNGVRSLKSXXXXXXXXXXXCNCLKNAARGIK 85
++C V + + PCL Y + GGA P AACC G+RS+ + C CLKN A G
Sbjct: 38 LSCSTVYNTLLPCLPYVQSGGAVP-AACCGGIRSVVAAARTTADRRAACTCLKNVAAGAA 96
Query: 86 G-LNAGNAASIPSKCGVSVPYTISASIDCSRV 116
G AA +P +CGVSVP+ IS +++C+ V
Sbjct: 97 GGPYISRAAGLPGRCGVSVPFKISPNVNCNAV 128
>Os01g0822900 Similar to Lipid transfer protein
Length = 120
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 52/92 (56%), Gaps = 2/92 (2%)
Query: 26 ITCGQVNSAVGPCLTYARGGGAGPSAACCNGVRSLKSXXXXXXXXXXXCNCLKNAARGIK 85
I+C V + + PCL Y + GG P A CC G++SL + C CLKN A G
Sbjct: 29 ISCSAVYNTLMPCLPYVQAGGTVPRA-CCGGIQSLLAAANNTPDRRTICGCLKNVANGAS 87
Query: 86 G-LNAGNAASIPSKCGVSVPYTISASIDCSRV 116
G AA++PSKC VS+PY IS S++C+ +
Sbjct: 88 GGPYITRAAALPSKCNVSLPYKISTSVNCNAI 119
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.132 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,989,882
Number of extensions: 84555
Number of successful extensions: 358
Number of sequences better than 1.0e-10: 24
Number of HSP's gapped: 340
Number of HSP's successfully gapped: 24
Length of query: 117
Length of database: 17,035,801
Length adjustment: 84
Effective length of query: 33
Effective length of database: 12,649,825
Effective search space: 417444225
Effective search space used: 417444225
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 149 (62.0 bits)