Os11g0115400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Lipid transfer protein LPT IV.
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Os11g0115400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Lipid transfer protein LPT IV.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 141.64 | 0.559 | 12.4 | -4.13 | 1.49 | 1.19 | 0.551 | -5.07 | -0.995 | 6.63 | 18.6 | 1632 | -- | -- |
| 165.45 | 0.599 | 12.3 | -3.15 | 1.42 | 1.38 | 0.446 | -- | -0.844 | 6.82 | 12.41 | 10076 | -- | -- |
| 142.2 | 0.555 | 12.4 | -4.13 | 1.52 | 1.2 | -- | -5.13 | -0.995 | 6.69 | 18.5 | 1700 | -- | -- |
| 165.59 | 0.599 | 12.3 | -3.1 | 1.44 | 1.29 | -- | -- | -0.79 | 6.81 | 10.38 | 10075 | -- | -- |
| 252.98 | 0.741 | 12.5 | -4.08 | -- | 1.15 | -- | -4.58 | -0.961 | -- | 17.3 | 2860 | -- | -- |
| 192.42 | 0.65 | 12.2 | -2.36 | 1.46 | -- | 0.571 | -- | -0.385 | 6.61 | -- | -- | -- | -- |
| 193.19 | 0.651 | 12.2 | -2.35 | 1.46 | -- | -- | -- | -0.386 | 6.69 | -- | -- | -- | -- |
| 273.39 | 0.77 | 12.3 | -3.11 | -- | 1.36 | -- | -- | -0.784 | -- | 10.14 | 10043 | -- | -- |
| 212.28 | 0.679 | 12.2 | -- | 1.42 | -1.48 | -- | -- | -0.262 | 6.74 | 35.1 | 47520 | -- | -- |
| 304.03 | 0.815 | 12.3 | -2.32 | -- | -- | -- | -- | -0.357 | -- | -- | -- | -- | -- |
| 339.21 | 0.862 | 12.2 | -- | 1.43 | -- | -- | -- | -0.124 | 6.78 | -- | -- | -- | -- |
| 317.44 | 0.83 | 12.2 | -- | -- | -1.47 | -- | -- | -0.286 | -- | 35.37 | 47520 | -- | -- |
| 446 | 0.986 | 12.2 | -- | -- | -- | -- | -- | -0.1 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 140.46 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 2 | 140.49 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 3 | 141.72 | temperature | 30 | 720 | < th | dose dependent | sin | 13 | NA |
| 4 | 141.84 | temperature | 10 | 720 | > th | dose dependent | sin | 11 | NA |
| 5 | 142.01 | humidity | 90 | 14400 | > th | dose independent | rect. | 21 | 6 |
| 7 | 142.18 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 15 |
| 8 | 142.27 | humidity | 90 | 14400 | < th | dose independent | rect. | 20 | 8 |
| 11 | 142.46 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 15 |
| 13 | 142.51 | humidity | 90 | 14400 | < th | dose independent | rect. | 21 | 6 |
| 16 | 142.59 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 11 |
| 22 | 142.66 | humidity | 90 | 14400 | < th | dose independent | rect. | 21 | 4 |
| 23 | 142.66 | temperature | 10 | 720 | > th | dose dependent | rect. | 18 | 14 |
| 24 | 142.68 | temperature | 20 | 1440 | > th | dose dependent | sin | 13 | NA |
| 33 | 142.77 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 2 |
| 44 | 142.85 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 19 |
| 47 | 142.87 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 12 |
| 58 | 142.97 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 65 | 143.01 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 5 |
| 69 | 143.03 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 12 |
| 120 | 143.51 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 3 |
| 166 | 143.81 | radiation | 30 | 4320 | < th | dose independent | rect. | 16 | 17 |
| 182 | 143.94 | temperature | 30 | 720 | < th | dose dependent | rect. | 11 | 19 |
| 227 | 144.26 | temperature | 20 | 1440 | > th | dose dependent | rect. | 11 | 21 |
| 237 | 144.30 | humidity | 90 | 14400 | < th | dose independent | sin | 11 | NA |
| 245 | 144.34 | humidity | 90 | 14400 | > th | dose independent | sin | 12 | NA |
| 273 | 144.47 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 302 | 144.60 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 23 |
| 314 | 144.64 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 23 |
| 333 | 144.71 | radiation | 20 | 4320 | < th | dose independent | rect. | 17 | 15 |
| 366 | 144.83 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 20 |
| 390 | 144.92 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 19 |
| 401 | 144.96 | temperature | 25 | 4320 | < th | dose independent | rect. | 12 | 1 |
| 426 | 145.03 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 4 |
| 433 | 145.06 | radiation | 30 | 4320 | < th | dose independent | rect. | 6 | 3 |
| 442 | 145.08 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 629 | 145.54 | temperature | 30 | 1440 | < th | dose dependent | rect. | 19 | 3 |
| 650 | 145.59 | temperature | 20 | 4320 | < th | dose independent | rect. | 17 | 13 |
| 655 | 145.60 | temperature | 20 | 4320 | > th | dose independent | sin | 14 | NA |
| 660 | 145.60 | radiation | 1 | 14400 | < th | dose dependent | rect. | 20 | 10 |
| 670 | 145.62 | radiation | 1 | 14400 | < th | dose dependent | rect. | 24 | 6 |
| 707 | 145.70 | temperature | 20 | 4320 | > th | dose independent | rect. | 16 | 15 |
| 710 | 145.71 | radiation | 1 | 14400 | < th | dose dependent | rect. | 3 | 3 |
| 716 | 145.72 | temperature | 20 | 4320 | < th | dose independent | sin | 13 | NA |
| 754 | 145.77 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 7 |
| 796 | 145.87 | wind | 3 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 803 | 145.88 | temperature | 20 | 4320 | > th | dose dependent | rect. | 15 | 3 |
| 810 | 145.88 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 20 |
| 830 | 145.93 | wind | 3 | 43200 | > th | dose independent | rect. | 11 | 3 |
| 861 | 145.97 | temperature | 20 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 886 | 146.01 | temperature | 20 | 4320 | > th | dose dependent | rect. | 13 | 5 |
| 888 | 146.01 | temperature | 20 | 4320 | > th | dose dependent | rect. | 11 | 7 |
| 898 | 146.02 | temperature | 25 | 1440 | < th | dose dependent | rect. | 2 | 3 |
| 912 | 146.06 | temperature | 20 | 4320 | > th | dose dependent | rect. | 9 | 9 |
| 945 | 146.12 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 961 | 146.15 | temperature | 25 | 4320 | < th | dose independent | rect. | 11 | 7 |
| 982 | 146.19 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 12 |