BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0115400 Os11g0115400|AK070414
(116 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0115100 Nonspecific lipid-transfer protein 1 precursor... 120 2e-28
AK059808 120 2e-28
Os11g0115400 Lipid transfer protein LPT IV 120 2e-28
Os11g0427800 Similar to Lipid transfer protein LPT III 114 1e-26
AK058805 100 2e-22
AK059819 98 1e-21
Os12g0115000 Similar to Lipid transfer protein LPT II 98 2e-21
Os12g0114800 Similar to Lipid transfer protein 74 3e-14
Os11g0115100 Similar to Lipid transfer protein 74 3e-14
Os12g0115300 Plant lipid transfer protein/Par allergen fami... 70 4e-13
Os11g0116000 Similar to Nonspecific lipid-transfer protein ... 70 4e-13
AK070192 70 4e-13
AK061740 67 2e-12
Os11g0116200 Similar to Nonspecific lipid-transfer protein ... 64 3e-11
Os12g0114500 Similar to Nonspecific lipid-transfer protein ... 62 1e-10
AK102455 62 1e-10
>Os12g0115100 Nonspecific lipid-transfer protein 1 precursor (LTP 1) (PAPI)
Length = 116
Score = 120 bits (302), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 65/91 (71%), Positives = 65/91 (71%)
Query: 26 ITCGQVNSAVGPCLTYXXXXXXXXXXXXXXVRSLKXXXXXXXXXXXXCNCLKNAARGIKG 85
ITCGQVNSAVGPCLTY VRSLK CNCLKNAARGIKG
Sbjct: 26 ITCGQVNSAVGPCLTYARGGAGPSAACCSGVRSLKAAASTTADRRTACNCLKNAARGIKG 85
Query: 86 LNAGNAASIPSKCGVSVPYTISASIDCSRVS 116
LNAGNAASIPSKCGVSVPYTISASIDCSRVS
Sbjct: 86 LNAGNAASIPSKCGVSVPYTISASIDCSRVS 116
>AK059808
Length = 116
Score = 120 bits (302), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 65/91 (71%), Positives = 65/91 (71%)
Query: 26 ITCGQVNSAVGPCLTYXXXXXXXXXXXXXXVRSLKXXXXXXXXXXXXCNCLKNAARGIKG 85
ITCGQVNSAVGPCLTY VRSLK CNCLKNAARGIKG
Sbjct: 26 ITCGQVNSAVGPCLTYARGGAGPSAACCSGVRSLKAAASTTADRRTACNCLKNAARGIKG 85
Query: 86 LNAGNAASIPSKCGVSVPYTISASIDCSRVS 116
LNAGNAASIPSKCGVSVPYTISASIDCSRVS
Sbjct: 86 LNAGNAASIPSKCGVSVPYTISASIDCSRVS 116
>Os11g0115400 Lipid transfer protein LPT IV
Length = 116
Score = 120 bits (302), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 65/91 (71%), Positives = 65/91 (71%)
Query: 26 ITCGQVNSAVGPCLTYXXXXXXXXXXXXXXVRSLKXXXXXXXXXXXXCNCLKNAARGIKG 85
ITCGQVNSAVGPCLTY VRSLK CNCLKNAARGIKG
Sbjct: 26 ITCGQVNSAVGPCLTYARGGAGPSAACCSGVRSLKAAASSTADRRTACNCLKNAARGIKG 85
Query: 86 LNAGNAASIPSKCGVSVPYTISASIDCSRVS 116
LNAGNAASIPSKCGVSVPYTISASIDCSRVS
Sbjct: 86 LNAGNAASIPSKCGVSVPYTISASIDCSRVS 116
>Os11g0427800 Similar to Lipid transfer protein LPT III
Length = 117
Score = 114 bits (285), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 64/91 (70%), Positives = 64/91 (70%), Gaps = 1/91 (1%)
Query: 26 ITCGQVNSAVGPCLTYXXXXXXXXXXXX-XXVRSLKXXXXXXXXXXXXCNCLKNAARGIK 84
ITCGQVNSAVGPCLTY VRSLK CNCLKNAARGIK
Sbjct: 26 ITCGQVNSAVGPCLTYARGGGAGPSAACCNGVRSLKSAARTTADRRTACNCLKNAARGIK 85
Query: 85 GLNAGNAASIPSKCGVSVPYTISASIDCSRV 115
GLNAGNAASIPSKCGVSVPYTISASIDCSRV
Sbjct: 86 GLNAGNAASIPSKCGVSVPYTISASIDCSRV 116
>AK058805
Length = 75
Score = 100 bits (249), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/83 (67%), Positives = 57/83 (68%), Gaps = 10/83 (12%)
Query: 34 AVGPCLTYXXXXXXXXXXXXXXVRSLKXXXXXXXXXXXXCNCLKNAARGIKGLNAGNAAS 93
A+GPCLTY VRSLK CNCLKNAARGIKGLNAGNAAS
Sbjct: 3 ALGPCLTYARGG----------VRSLKAAASSTADRRTACNCLKNAARGIKGLNAGNAAS 52
Query: 94 IPSKCGVSVPYTISASIDCSRVS 116
IPSKCGVSVPYTISASIDCSRVS
Sbjct: 53 IPSKCGVSVPYTISASIDCSRVS 75
>AK059819
Length = 117
Score = 97.8 bits (242), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/90 (58%), Positives = 56/90 (62%)
Query: 26 ITCGQVNSAVGPCLTYXXXXXXXXXXXXXXVRSLKXXXXXXXXXXXXCNCLKNAARGIKG 85
I+CGQVNSAV PCL+Y VRSL CNCLKN A I G
Sbjct: 27 ISCGQVNSAVSPCLSYARGGSGPSAACCSGVRSLNSAATTTADRRTACNCLKNVAGSISG 86
Query: 86 LNAGNAASIPSKCGVSVPYTISASIDCSRV 115
LNAGNAASIPSKCGVS+PYTIS SIDCS V
Sbjct: 87 LNAGNAASIPSKCGVSIPYTISPSIDCSSV 116
>Os12g0115000 Similar to Lipid transfer protein LPT II
Length = 110
Score = 97.8 bits (242), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/90 (58%), Positives = 56/90 (62%)
Query: 26 ITCGQVNSAVGPCLTYXXXXXXXXXXXXXXVRSLKXXXXXXXXXXXXCNCLKNAARGIKG 85
I+CGQVNSAV PCL+Y VRSL CNCLKN A I G
Sbjct: 20 ISCGQVNSAVSPCLSYARGGSGPSAACCSGVRSLNSAATTTADRRTACNCLKNVAGSISG 79
Query: 86 LNAGNAASIPSKCGVSVPYTISASIDCSRV 115
LNAGNAASIPSKCGVS+PYTIS SIDCS V
Sbjct: 80 LNAGNAASIPSKCGVSIPYTISPSIDCSSV 109
>Os12g0114800 Similar to Lipid transfer protein
Length = 121
Score = 73.6 bits (179), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 27 TCGQVNSAVGPCLTYXXXXXXXXXXXXXX-VRSLKXXXXXXXXXXXXCNCLKNAARGIKG 85
+CG V S++ PCL+Y VR+L C+CLKN A +
Sbjct: 31 SCGDVTSSIAPCLSYVMGRESSPSSSCCSGVRTLNGKASSSADRRTACSCLKNMASSFRN 90
Query: 86 LNAGNAASIPSKCGVSVPYTISASIDCSRV 115
LN GNAASIPSKCGVSV + IS S+DCS++
Sbjct: 91 LNMGNAASIPSKCGVSVAFPISTSVDCSKI 120
>Os11g0115100 Similar to Lipid transfer protein
Length = 121
Score = 73.6 bits (179), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 27 TCGQVNSAVGPCLTYXXXXXXXXXXXXXX-VRSLKXXXXXXXXXXXXCNCLKNAARGIKG 85
+CG V S++ PCL+Y VR+L C+CLKN A +
Sbjct: 31 SCGDVTSSIAPCLSYVMGRESSPSSSCCSGVRTLNGKASSSADRRTACSCLKNMASSFRN 90
Query: 86 LNAGNAASIPSKCGVSVPYTISASIDCSRV 115
LN GNAASIPSKCGVSV + IS S+DCS++
Sbjct: 91 LNMGNAASIPSKCGVSVAFPISTSVDCSKI 120
>Os12g0115300 Plant lipid transfer protein/Par allergen family protein
Length = 118
Score = 70.1 bits (170), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 47/91 (51%)
Query: 26 ITCGQVNSAVGPCLTYXXXXXXXXXXXXXXVRSLKXXXXXXXXXXXXCNCLKNAARGIKG 85
ITCGQV SA+ PC++Y V+ L C CLK A IK
Sbjct: 28 ITCGQVGSAIAPCISYVTGRGGLTQGCCNGVKGLNNAARTTADRQAACRCLKTLAGTIKS 87
Query: 86 LNAGNAASIPSKCGVSVPYTISASIDCSRVS 116
LN G AA IP KCGV+V + IS S DCS+VS
Sbjct: 88 LNLGAAAGIPGKCGVNVGFPISLSTDCSKVS 118
>Os11g0116000 Similar to Nonspecific lipid-transfer protein 1 (LTP 1) (Major
allergen Pru d 3)
Length = 118
Score = 69.7 bits (169), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 47/91 (51%)
Query: 26 ITCGQVNSAVGPCLTYXXXXXXXXXXXXXXVRSLKXXXXXXXXXXXXCNCLKNAARGIKG 85
ITCGQV SA+ PC++Y V+ L C CLK A IK
Sbjct: 28 ITCGQVGSAIAPCISYVTGRGGLTQGCCNGVKGLNNAARTTADRQAACRCLKTLAGTIKS 87
Query: 86 LNAGNAASIPSKCGVSVPYTISASIDCSRVS 116
LN G AA IP KCGV+V + IS S DCS+VS
Sbjct: 88 LNLGAAAGIPGKCGVNVGFPISLSTDCSKVS 118
>AK070192
Length = 118
Score = 69.7 bits (169), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 47/91 (51%)
Query: 26 ITCGQVNSAVGPCLTYXXXXXXXXXXXXXXVRSLKXXXXXXXXXXXXCNCLKNAARGIKG 85
ITCGQV SA+ PC++Y V+ L C CLK A IK
Sbjct: 28 ITCGQVGSAIAPCISYVTGRGGLTQGCCNGVKGLNNAARTTADRQAACRCLKTLAGTIKS 87
Query: 86 LNAGNAASIPSKCGVSVPYTISASIDCSRVS 116
LN G AA IP KCGV+V + IS S DCS+VS
Sbjct: 88 LNLGAAAGIPGKCGVNVGFPISLSTDCSKVS 118
>AK061740
Length = 118
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 47/91 (51%)
Query: 26 ITCGQVNSAVGPCLTYXXXXXXXXXXXXXXVRSLKXXXXXXXXXXXXCNCLKNAARGIKG 85
ITCGQV SA+ PC++Y V+ L C CLK+ A IK
Sbjct: 28 ITCGQVGSAIAPCISYVTGRSGLTQGCCNGVKGLNNAARTTADRQAACRCLKSLAGSIKS 87
Query: 86 LNAGNAASIPSKCGVSVPYTISASIDCSRVS 116
LN G A +P KCGV+V + IS S DC++VS
Sbjct: 88 LNLGTVAGVPGKCGVNVGFPISLSTDCNKVS 118
>Os11g0116200 Similar to Nonspecific lipid-transfer protein 1 (LTP 1) (Major
allergen Pru d 3)
Length = 132
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 44/88 (50%)
Query: 26 ITCGQVNSAVGPCLTYXXXXXXXXXXXXXXVRSLKXXXXXXXXXXXXCNCLKNAARGIKG 85
ITCGQV SA+ PC++Y V+ L C CLK+ A IK
Sbjct: 28 ITCGQVGSAIAPCISYVTGRSGLTQGCCNGVKGLNNAARTTADRQAACRCLKSLAGSIKS 87
Query: 86 LNAGNAASIPSKCGVSVPYTISASIDCS 113
LN G A +P KCGV+V + IS S DC+
Sbjct: 88 LNLGTVAGVPGKCGVNVGFPISLSTDCN 115
>Os12g0114500 Similar to Nonspecific lipid-transfer protein (LTP) (Fragment)
Length = 119
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 27 TCGQVNSAVGPCLTYXXXXXXXXXXXX-XXVRSLKXXXXXXXXXXXXCNCLKNAARGIKG 85
TCGQV S + PC+ Y VR+L C CLK + G
Sbjct: 29 TCGQVVSMLAPCIMYATGRVSAPTGGCCDGVRTLNSAAATTADRQTTCACLKQQTSAMGG 88
Query: 86 LNAGNAASIPSKCGVSVPYTISASIDCSRV 115
L A IPSKCGV++PY IS S DCSRV
Sbjct: 89 LRPDLVAGIPSKCGVNIPYAISPSTDCSRV 118
>AK102455
Length = 119
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 27 TCGQVNSAVGPCLTYXXXXXXXXXXXX-XXVRSLKXXXXXXXXXXXXCNCLKNAARGIKG 85
TCGQV S + PC+ Y VR+L C CLK + G
Sbjct: 29 TCGQVVSMLAPCIMYATGRVSAPTGGCCDGVRTLNSAAATTADRQTTCACLKQQTSAMGG 88
Query: 86 LNAGNAASIPSKCGVSVPYTISASIDCSRV 115
L A IPSKCGV++PY IS S DCSRV
Sbjct: 89 LRPDLVAGIPSKCGVNIPYAISPSTDCSRV 118
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.131 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 1,835,679
Number of extensions: 32286
Number of successful extensions: 130
Number of sequences better than 1.0e-10: 17
Number of HSP's gapped: 120
Number of HSP's successfully gapped: 17
Length of query: 116
Length of database: 17,035,801
Length adjustment: 83
Effective length of query: 33
Effective length of database: 12,702,039
Effective search space: 419167287
Effective search space used: 419167287
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 149 (62.0 bits)