Os12g0115100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Nonspecific lipid-transfer protein 1 precursor (LTP 1) (PAPI).
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Os12g0115100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Nonspecific lipid-transfer protein 1 precursor (LTP 1) (PAPI).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 94.23 | 0.456 | 15.2 | -2.66 | 0.826 | 0.839 | 0.561 | -3.73 | -0.0363 | 7.3 | 19.1 | 1656 | -- | -- |
| 105.59 | 0.479 | 15.1 | -1.63 | 0.9 | 0.968 | 0.384 | -- | 0.26 | 7.94 | 14.78 | 999 | -- | -- |
| 94.95 | 0.454 | 15.2 | -2.67 | 0.836 | 0.842 | -- | -3.78 | -0.0468 | 7.43 | 19.37 | 1695 | -- | -- |
| 105.92 | 0.479 | 15.1 | -1.63 | 0.877 | 0.996 | -- | -- | 0.242 | 8.12 | 14.38 | 1038 | -- | -- |
| 129.52 | 0.53 | 15.2 | -2.57 | -- | 0.861 | -- | -3.41 | -0.0173 | -- | 18.7 | 1468 | -- | -- |
| 119.83 | 0.513 | 15.1 | -1.36 | 0.794 | -- | 0.599 | -- | 0.409 | 7.28 | -- | -- | -- | -- |
| 120.66 | 0.514 | 15.1 | -1.35 | 0.793 | -- | -- | -- | 0.409 | 7.51 | -- | -- | -- | -- |
| 139.55 | 0.55 | 15.1 | -1.62 | -- | 0.827 | -- | -- | 0.235 | -- | 15.85 | 1403 | -- | -- |
| 167.49 | 0.606 | 15 | -- | 0.803 | 0.25 | -- | -- | 0.522 | 7.2 | 19.1 | 417 | -- | -- |
| 154.28 | 0.58 | 15.1 | -1.33 | -- | -- | -- | -- | 0.421 | -- | -- | -- | -- | -- |
| 168.47 | 0.607 | 15 | -- | 0.781 | -- | -- | -- | 0.559 | 7.62 | -- | -- | -- | -- |
| 176.38 | 0.619 | 15 | -- | -- | -0.735 | -- | -- | 0.843 | -- | 20.9 | 47520 | -- | -- |
| 201.29 | 0.662 | 15 | -- | -- | -- | -- | -- | 0.569 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 88.86 | temperature | 10 | 720 | > th | dose dependent | rect. | 18 | 15 |
| 6 | 89.46 | temperature | 10 | 720 | > th | dose dependent | sin | 11 | NA |
| 11 | 90.00 | temperature | 30 | 720 | < th | dose dependent | sin | 13 | NA |
| 14 | 90.14 | temperature | 30 | 720 | < th | dose dependent | rect. | 16 | 15 |
| 91 | 92.09 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 19 |
| 229 | 94.11 | humidity | 70 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 240 | 94.32 | temperature | 25 | 4320 | < th | dose independent | rect. | 12 | 1 |
| 253 | 94.41 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 16 |
| 278 | 94.60 | humidity | 70 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 279 | 94.62 | radiation | 1 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 280 | 94.62 | temperature | 30 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 285 | 94.66 | radiation | 1 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 286 | 94.69 | temperature | 20 | 1440 | > th | dose dependent | sin | 13 | NA |
| 296 | 94.74 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 14 |
| 297 | 94.76 | temperature | 25 | 4320 | < th | dose independent | rect. | 15 | 3 |
| 299 | 94.77 | radiation | 1 | 43200 | < th | dose independent | rect. | 16 | 9 |
| 303 | 94.77 | humidity | 90 | 43200 | > th | dose dependent | rect. | 8 | 1 |
| 305 | 94.78 | radiation | 1 | 43200 | < th | dose independent | rect. | 16 | 3 |
| 307 | 94.78 | radiation | 1 | 43200 | < th | dose independent | rect. | 16 | 6 |
| 311 | 94.79 | temperature | 25 | 4320 | > th | dose independent | rect. | 15 | 3 |
| 325 | 94.84 | temperature | 25 | 4320 | > th | dose independent | rect. | 16 | 1 |
| 328 | 94.85 | radiation | 1 | 43200 | < th | dose independent | rect. | 7 | 18 |
| 333 | 94.86 | radiation | 1 | 43200 | < th | dose independent | rect. | 7 | 12 |
| 366 | 94.94 | temperature | 30 | 270 | < th | dose dependent | rect. | 12 | 23 |
| 377 | 94.97 | radiation | 1 | 43200 | > th | dose independent | rect. | 7 | 12 |
| 394 | 94.98 | radiation | 1 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 400 | 95.00 | humidity | 90 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 433 | 95.07 | radiation | 1 | 43200 | < th | dose independent | rect. | 16 | 19 |
| 437 | 95.07 | temperature | 30 | 270 | < th | dose dependent | sin | 8 | NA |
| 447 | 95.09 | radiation | 1 | 43200 | > th | dose independent | rect. | 16 | 3 |
| 461 | 95.10 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 10 |
| 467 | 95.11 | temperature | 25 | 4320 | < th | dose independent | rect. | 10 | 8 |
| 470 | 95.11 | radiation | 1 | 14400 | < th | dose dependent | rect. | 21 | 9 |
| 486 | 95.12 | radiation | 1 | 14400 | < th | dose dependent | rect. | 24 | 6 |
| 493 | 95.13 | radiation | 1 | 43200 | < th | dose independent | sin | 20 | NA |
| 510 | 95.15 | radiation | 1 | 14400 | < th | dose dependent | rect. | 2 | 4 |
| 583 | 95.21 | radiation | 1 | 43200 | < th | dose dependent | rect. | 7 | 16 |
| 584 | 95.21 | radiation | 1 | 43200 | < th | dose dependent | rect. | 7 | 22 |
| 588 | 95.22 | radiation | 1 | 43200 | < th | dose dependent | rect. | 7 | 12 |
| 597 | 95.23 | temperature | 20 | 720 | > th | dose independent | sin | 9 | NA |
| 600 | 95.23 | radiation | 1 | 43200 | > th | dose independent | rect. | 16 | 19 |
| 605 | 95.24 | temperature | 25 | 4320 | > th | dose independent | rect. | 12 | 6 |
| 609 | 95.24 | radiation | 1 | 43200 | < th | dose dependent | rect. | 15 | 14 |
| 613 | 95.25 | radiation | 1 | 43200 | < th | dose dependent | rect. | 16 | 3 |
| 626 | 95.25 | radiation | 1 | 43200 | < th | dose dependent | rect. | 16 | 11 |
| 676 | 95.30 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 6 |
| 683 | 95.31 | humidity | 90 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 715 | 95.33 | radiation | 1 | 43200 | > th | dose independent | sin | 21 | NA |
| 717 | 95.33 | radiation | 1 | 43200 | < th | dose independent | no | NA | NA |
| 718 | 95.33 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 2 | 2 |
| 724 | 95.33 | temperature | 25 | 4320 | < th | dose independent | rect. | 5 | 13 |
| 728 | 95.33 | radiation | 1 | 43200 | < th | dose independent | rect. | 24 | 19 |
| 735 | 95.33 | radiation | 1 | 43200 | < th | dose independent | rect. | 24 | 22 |
| 737 | 95.33 | radiation | 1 | 43200 | < th | dose independent | rect. | 2 | 23 |
| 745 | 95.33 | radiation | 1 | 43200 | < th | dose dependent | rect. | 16 | 19 |
| 789 | 95.35 | temperature | 25 | 4320 | > th | dose independent | rect. | 12 | 1 |
| 797 | 95.36 | radiation | 1 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 829 | 95.39 | radiation | 1 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 843 | 95.39 | temperature | 25 | 270 | < th | dose dependent | rect. | 21 | 13 |
| 853 | 95.40 | radiation | 1 | 43200 | < th | dose dependent | sin | 19 | NA |
| 864 | 95.41 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 2 |
| 935 | 95.45 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 937 | 95.45 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 17 |
| 973 | 95.47 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 23 |
| 975 | 95.47 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 15 |
| 982 | 95.47 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 19 |
| 996 | 95.48 | radiation | 1 | 43200 | < th | dose dependent | no | NA | NA |