Os12g0114500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Nonspecific lipid-transfer protein (LTP) (Fragment).
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Os12g0114500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Nonspecific lipid-transfer protein (LTP) (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 414.89 | 0.957 | 3.25 | 2.08 | 0.77 | -0.551 | 2.21 | 5.38 | 0.163 | 1.2 | 49.8 | 4423 | -- | -- |
| 457.24 | 0.996 | 3.39 | 2.15 | 0.773 | -0.2 | 2.37 | -- | 0.0948 | 1.22 | 59.01 | 2541 | -- | -- |
| 434.16 | 0.97 | 3.24 | 2.05 | 0.769 | -0.623 | -- | 5.39 | 0.15 | 1.04 | 49.98 | 4376 | -- | -- |
| 478.99 | 1.03 | 3.39 | 2.1 | 0.741 | -0.407 | -- | -- | 0.123 | 0.943 | 49.98 | 4376 | -- | -- |
| 456.35 | 0.995 | 3.25 | 1.72 | -- | -0.138 | -- | 5.56 | 0.245 | -- | 45 | 5402 | -- | -- |
| 457.53 | 1 | 3.39 | 2.16 | 0.764 | -- | 2.34 | -- | 0.14 | 1.13 | -- | -- | -- | -- |
| 480.23 | 1.03 | 3.39 | 2.07 | 0.761 | -- | -- | -- | 0.128 | 1.01 | -- | -- | -- | -- |
| 466.61 | 1.01 | 3.36 | 1.29 | -- | 1.41 | -- | -- | 0.208 | -- | 35 | 9971 | -- | -- |
| 480.31 | 1.02 | 3.5 | -- | 0.8 | 1.96 | -- | -- | -0.19 | 1.5 | 37.05 | 5488 | -- | -- |
| 516.21 | 1.06 | 3.38 | 2.1 | -- | -- | -- | -- | 0.143 | -- | -- | -- | -- | -- |
| 593.58 | 1.14 | 3.44 | -- | 0.795 | -- | -- | -- | -0.103 | 1.12 | -- | -- | -- | -- |
| 508.73 | 1.05 | 3.42 | -- | -- | 2.24 | -- | -- | 0.0782 | -- | 36.05 | 5595 | -- | -- |
| 632.8 | 1.17 | 3.43 | -- | -- | -- | -- | -- | -0.0902 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 409.94 | humidity | 50.0 | 4320 | < th | dose dependent | rect. | 14 | 2 |
| 2 | 410.29 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 12 | 2 |
| 5 | 410.45 | humidity | 50.0 | 4320 | < th | dose independent | rect. | 13 | 1 |
| 6 | 410.51 | humidity | 50.0 | 4320 | < th | dose independent | rect. | 12 | 5 |
| 13 | 411.29 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 12 | 5 |
| 36 | 412.07 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 20 | 2 |
| 37 | 412.07 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 20 | 2 |
| 41 | 412.23 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 20 | 2 |
| 42 | 412.27 | atmosphere | 1015.0 | 14400 | > th | dose dependent | rect. | 23 | 1 |
| 48 | 412.63 | atmosphere | 1015.0 | 14400 | > th | dose dependent | rect. | 18 | 6 |
| 51 | 412.66 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 3 |
| 79 | 412.91 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 83 | 413.06 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 12 | 14 |
| 86 | 413.09 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 12 | 9 |
| 91 | 413.11 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 12 | 18 |
| 95 | 413.13 | atmosphere | 1015.0 | 14400 | > th | dose independent | rect. | 14 | 9 |
| 98 | 413.14 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 12 | 21 |
| 140 | 413.39 | atmosphere | 1015.0 | 14400 | < th | dose independent | rect. | 15 | 8 |
| 145 | 413.44 | atmosphere | 1015.0 | 14400 | < th | dose independent | rect. | 14 | 10 |
| 150 | 413.50 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 162 | 413.58 | atmosphere | 1015.0 | 14400 | < th | dose independent | rect. | 17 | 4 |
| 223 | 414.07 | atmosphere | 1015.0 | 14400 | > th | dose dependent | sin | 16 | NA |
| 224 | 414.10 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 233 | 414.19 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 248 | 414.30 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 264 | 414.41 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 266 | 414.41 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 293 | 414.62 | atmosphere | 1015.0 | 14400 | > th | dose independent | sin | 18 | NA |
| 294 | 414.62 | atmosphere | 1015.0 | 14400 | < th | dose independent | sin | 18 | NA |
| 321 | 414.79 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 6 | 4 |
| 356 | 414.99 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 364 | 415.05 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 7 | 3 |
| 365 | 415.05 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 7 | 3 |
| 383 | 415.12 | temperature | 20.0 | 30 | > th | dose independent | rect. | 1 | 23 |
| 414 | 415.18 | humidity | 50.0 | 4320 | < th | dose independent | sin | 17 | NA |
| 433 | 415.28 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 9 | 1 |
| 463 | 415.35 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 3 | 3 |
| 498 | 415.45 | wind | 3.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 534 | 415.50 | humidity | 50.0 | 4320 | < th | dose dependent | sin | 13 | NA |
| 676 | 415.79 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 13 | 3 |
| 770 | 415.95 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 14 | 2 |
| 772 | 415.95 | atmosphere | 1015.0 | 14400 | < th | dose independent | rect. | 11 | 3 |
| 818 | 415.99 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 820 | 415.99 | atmosphere | 1015.0 | 14400 | > th | dose independent | rect. | 11 | 3 |
| 867 | 416.05 | atmosphere | 1015.0 | 14400 | < th | dose independent | rect. | 10 | 8 |
| 898 | 416.09 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 12 | 1 |
| 904 | 416.10 | atmosphere | 1015.0 | 14400 | > th | dose independent | rect. | 10 | 8 |
| 922 | 416.11 | atmosphere | 1015.0 | 14400 | > th | dose dependent | rect. | 9 | 7 |