BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0114500 Os12g0114500|AK104981
(119 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G59320.1 | chr5:23929051-23929492 FORWARD LENGTH=116 85 7e-18
AT5G59310.1 | chr5:23925296-23925772 REVERSE LENGTH=113 80 2e-16
AT3G51590.1 | chr3:19135828-19136654 REVERSE LENGTH=120 79 6e-16
AT2G38540.1 | chr2:16130418-16130893 FORWARD LENGTH=119 79 7e-16
AT2G38530.1 | chr2:16128481-16128948 FORWARD LENGTH=119 77 2e-15
AT2G15050.1 | chr2:6518888-6519259 FORWARD LENGTH=124 73 2e-14
AT3G08770.2 | chr3:2664330-2664784 REVERSE LENGTH=118 73 4e-14
AT2G18370.1 | chr2:7980687-7981475 FORWARD LENGTH=117 67 3e-12
AT4G33355.1 | chr4:16067097-16067568 FORWARD LENGTH=120 66 5e-12
AT5G01870.1 | chr5:337234-337678 FORWARD LENGTH=117 62 5e-11
AT3G51600.1 | chr3:19138661-19139124 REVERSE LENGTH=119 59 5e-10
AT2G15325.1 | chr2:6669864-6670356 REVERSE LENGTH=122 45 6e-06
>AT5G59320.1 | chr5:23929051-23929492 FORWARD LENGTH=116
Length = 115
Score = 85.1 bits (209), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 44/92 (47%), Positives = 59/92 (64%), Gaps = 3/92 (3%)
Query: 29 TCGQVVSMLAPCIMY-ATGRVSAPTGGCCDGVRTLNSAAATTADRQTTCACLKQQTSAMG 87
+CG V LAPC Y + G + P+ CC GV+TLNS A TT DRQ C C++ ++
Sbjct: 26 SCGTVAGSLAPCATYLSKGGLVPPS--CCAGVKTLNSMAKTTPDRQQACRCIQSTAKSIS 83
Query: 88 GLRPDLVAGIPSKCGVNIPYAISPSTDCSRVH 119
GL P L +G+P KCGV+IPY IS ST+C+ +
Sbjct: 84 GLNPSLASGLPGKCGVSIPYPISMSTNCNNIK 115
>AT5G59310.1 | chr5:23925296-23925772 REVERSE LENGTH=113
Length = 112
Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/93 (49%), Positives = 58/93 (62%), Gaps = 8/93 (8%)
Query: 29 TCGQVVSMLAPCIMYAT--GRVSAPTGGCCDGVRTLNSAAATTADRQTTCACLKQQTSAM 86
TCG V S L+PC+ Y + G V P CC GV+ LN A TT DRQ C CL+ SA
Sbjct: 26 TCGTVASSLSPCLGYLSKGGVVPPP---CCAGVKKLNGMAQTTPDRQQACRCLQ---SAA 79
Query: 87 GGLRPDLVAGIPSKCGVNIPYAISPSTDCSRVH 119
G+ P L +G+P KCGV+IPY IS ST+C+ +
Sbjct: 80 KGVNPSLASGLPGKCGVSIPYPISTSTNCATIK 112
>AT3G51590.1 | chr3:19135828-19136654 REVERSE LENGTH=120
Length = 119
Score = 79.0 bits (193), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 42/89 (47%), Positives = 53/89 (59%), Gaps = 1/89 (1%)
Query: 30 CGQVVSMLAPCIMYATGRVSAPTGGCCDGVRTLNSAAATTADRQTTCACLKQQTSAMGGL 89
CG V S LA C+ Y T P+ CC GV++L A TT DR+ C CLK + GL
Sbjct: 28 CGTVTSTLAQCLTYLTNSGPLPSQ-CCVGVKSLYQLAQTTPDRKQVCECLKLAGKEIKGL 86
Query: 90 RPDLVAGIPSKCGVNIPYAISPSTDCSRV 118
DLVA +P+ CGV+IPY IS ST+C +
Sbjct: 87 NTDLVAALPTTCGVSIPYPISFSTNCDSI 115
>AT2G38540.1 | chr2:16130418-16130893 FORWARD LENGTH=119
Length = 118
Score = 78.6 bits (192), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 48/93 (51%), Positives = 54/93 (58%), Gaps = 4/93 (4%)
Query: 29 TCGQVVSMLAPCIMYAT-GRVSAPTGGCCDGVRTLNSAAATTADRQTTCACLKQQTSAMG 87
+CG V S LA CI Y G V P CC GV+ LNS A TT DRQ C C++ A+G
Sbjct: 28 SCGSVNSNLAACIGYVLQGGVIPPA--CCSGVKNLNSIAKTTPDRQQACNCIQGAARALG 85
Query: 88 -GLRPDLVAGIPSKCGVNIPYAISPSTDCSRVH 119
GL AGIP CGVNIPY IS ST+C V
Sbjct: 86 SGLNAGRAAGIPKACGVNIPYKISTSTNCKTVR 118
>AT2G38530.1 | chr2:16128481-16128948 FORWARD LENGTH=119
Length = 118
Score = 77.0 bits (188), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/92 (50%), Positives = 56/92 (60%), Gaps = 2/92 (2%)
Query: 29 TCGQVVSMLAPCIMYATGRVSAPTGGCCDGVRTLNSAAATTADRQTTCACLKQQTSAMG- 87
+CG V LA CI Y T R + T GCC+GV L + A+TT DRQ C CL+ A+G
Sbjct: 28 SCGTVNGNLAGCIAYLT-RGAPLTQGCCNGVTNLKNMASTTPDRQQACRCLQSAAKAVGP 86
Query: 88 GLRPDLVAGIPSKCGVNIPYAISPSTDCSRVH 119
GL AG+PS C VNIPY IS ST+C+ V
Sbjct: 87 GLNTARAAGLPSACKVNIPYKISASTNCNTVR 118
>AT2G15050.1 | chr2:6518888-6519259 FORWARD LENGTH=124
Length = 123
Score = 73.2 bits (178), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 55/92 (59%), Gaps = 4/92 (4%)
Query: 29 TCGQVVSMLAPCIMYAT-GRVSAPTGGCCDGVRTLNSAAATTADRQTTCACLKQQTSAMG 87
+CG+V S L PC Y T G +++P CC+GVR LN TT DR+ C C+K +G
Sbjct: 28 SCGEVNSNLKPCTGYLTNGGITSPGPQCCNGVRKLNGMVLTTLDRRQACRCIKNAARNVG 87
Query: 88 -GLRPDLVAGIPSKCGVNIPYA--ISPSTDCS 116
GL D AGIP +CG+ IPY+ I +T C+
Sbjct: 88 PGLNADRAAGIPRRCGIKIPYSTQIRFNTKCN 119
>AT3G08770.2 | chr3:2664330-2664784 REVERSE LENGTH=118
Length = 117
Score = 72.8 bits (177), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 43/92 (46%), Positives = 56/92 (60%), Gaps = 9/92 (9%)
Query: 29 TCGQVVSMLAPCIMYATGRVSAPTGGCCDGVRTLNSAAATTADRQTTCACLKQQTSAMGG 88
+C V++ L PC+ Y T PT CC+G+ TL S A T+ DRQ C C+K SA+GG
Sbjct: 22 SCNTVIADLYPCLSYVTQGGPVPTL-CCNGLTTLKSQAQTSVDRQGVCRCIK---SAIGG 77
Query: 89 L--RPDLVAG---IPSKCGVNIPYAISPSTDC 115
L P + +PSKCGV++PY SPSTDC
Sbjct: 78 LTLSPRTIQNALELPSKCGVDLPYKFSPSTDC 109
>AT2G18370.1 | chr2:7980687-7981475 FORWARD LENGTH=117
Length = 116
Score = 66.6 bits (161), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Query: 29 TCGQVVSMLAPCIMYATGRVSAPTGGCCDGVRTLNSAAATTADRQTTCACLKQQTSAMGG 88
+C V+ L PC+ Y T P CCDGV++L +A T+AD++ C C+K +++
Sbjct: 27 SCSVVLQDLQPCVSYLTSGSGNPPETCCDGVKSLAAATTTSADKKAACQCIKSVANSV-T 85
Query: 89 LRPDLVAGIPSKCGVNIPYAISPSTDCSRV 118
++P+L + S CG ++P SP+ DC+ V
Sbjct: 86 VKPELAQALASNCGASLPVDASPTVDCTTV 115
>AT4G33355.1 | chr4:16067097-16067568 FORWARD LENGTH=120
Length = 119
Score = 65.9 bits (159), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 30 CGQVVSMLAPCIMYATGRVSAPTGGCCDGVRTLNSAAATTADRQTTCACLKQQTSAMGGL 89
C QV LA C+ Y P+ CC+G+ +L +AA ADRQ C CLK + + G+
Sbjct: 31 CPQVNMYLAQCLPYLKAG-GNPSPMCCNGLNSLKAAAPEKADRQVACNCLKSVANTIPGI 89
Query: 90 RPDLVAGIPSKCGVNIPYAISPSTDCSRVH 119
D +P+KCGVNI S + DC+ ++
Sbjct: 90 NDDFAKQLPAKCGVNIGVPFSKTVDCNSIN 119
>AT5G01870.1 | chr5:337234-337678 FORWARD LENGTH=117
Length = 116
Score = 62.4 bits (150), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 29 TCGQVVSMLAPCIMYATGRVSAPTGGCCDGVRTLNSAAATTADRQTTCACLKQQTS--AM 86
+C V + L PC++Y + P CC+G+R L+ A + +D+Q C C+K +
Sbjct: 25 SCNAVQANLYPCVVYVVQGGAIPYS-CCNGIRMLSKQATSASDKQGVCRCIKSVVGRVSY 83
Query: 87 GGLRPDLVAGIPSKCGVNIPYAISPSTDCSRVH 119
+ A +P KCGV +PY I PST+C+ +
Sbjct: 84 SSIYLKKAAALPGKCGVKLPYKIDPSTNCNSIK 116
>AT3G51600.1 | chr3:19138661-19139124 REVERSE LENGTH=119
Length = 118
Score = 59.3 bits (142), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 29 TCGQVVSMLAPCIMYATGRVSAPTGGCCDGVRTLNSAAATTADRQTTCACLKQQTSAMGG 88
+CG V L C Y T P G CC GV+ LNS A TT DRQ C C++ A+G
Sbjct: 28 SCGAVTGSLGQCYNYLTRGGFIPRG-CCSGVQRLNSLARTTRDRQQACRCIQGAARALGS 86
Query: 89 -LRPDLVAGIPSKCGVNIPYAISPSTDCSRVH 119
L A +P C V I Y IS T+C+ V
Sbjct: 87 RLNAGRAARLPGACRVRISYPISARTNCNTVR 118
>AT2G15325.1 | chr2:6669864-6670356 REVERSE LENGTH=122
Length = 121
Score = 45.4 bits (106), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
Query: 30 CGQVVSMLAPCIMYATGRVSA-PTGGCCDGVRTLNSAAATTADRQTTCACLKQQTSAMGG 88
C + ++L PC+ Y A P+ CC G+ +N T DR C CL + +A+
Sbjct: 31 CEEATNLLTPCLRYLWAPPEAKPSPECCSGLDKVNKGVKTYDDRHDMCICLSSE-AAITS 89
Query: 89 LRPDLVAGIPSKCGVNIPYAISPSTDCSRV 118
+P C V + + P DCS +
Sbjct: 90 ADQYKFDNLPKLCNVALFAPVGPKFDCSTI 119
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.129 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,962,347
Number of extensions: 57424
Number of successful extensions: 172
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 171
Number of HSP's successfully gapped: 12
Length of query: 119
Length of database: 11,106,569
Length adjustment: 85
Effective length of query: 34
Effective length of database: 8,776,209
Effective search space: 298391106
Effective search space used: 298391106
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 105 (45.1 bits)