Os11g0114900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Nonspecific lipid-transfer protein (LTP) (Fragment).
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Os11g0114900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Nonspecific lipid-transfer protein (LTP) (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 65.44 | 0.38 | 3.25 | 0.348 | 0.393 | -0.506 | 0.209 | -1.35 | -0.00536 | 3.48 | 29.1 | 1061 | -- | -- |
| 66.62 | 0.38 | 3.29 | 0.174 | 0.424 | -0.614 | 0.197 | -- | -0.0889 | 3.36 | 29.3 | 1028 | -- | -- |
| 65.43 | 0.377 | 3.26 | 0.321 | 0.417 | -0.54 | -- | -1.29 | -0.0226 | 3.62 | 29.1 | 1017 | -- | -- |
| 66.19 | 0.379 | 3.28 | 0.0338 | 0.405 | -0.658 | -- | -- | -0.0743 | 3.7 | 29.1 | 1032 | -- | -- |
| 73.63 | 0.4 | 3.26 | 0.338 | -- | -0.564 | -- | -1.24 | -0.0157 | -- | 28.96 | 1129 | -- | -- |
| 80.79 | 0.421 | 3.28 | 0.228 | 0.463 | -- | 0.41 | -- | -0.0163 | 2.29 | -- | -- | -- | -- |
| 81.41 | 0.423 | 3.28 | 0.217 | 0.465 | -- | -- | -- | -0.0189 | 2.38 | -- | -- | -- | -- |
| 74.43 | 0.402 | 3.29 | 0.034 | -- | -0.677 | -- | -- | -0.0938 | -- | 29.1 | 1139 | -- | -- |
| 66.19 | 0.379 | 3.28 | -- | 0.416 | -0.663 | -- | -- | -0.0816 | 3.85 | 29.1 | 1032 | -- | -- |
| 94.2 | 0.454 | 3.27 | 0.237 | -- | -- | -- | -- | -0.00746 | -- | -- | -- | -- | -- |
| 82.65 | 0.425 | 3.28 | -- | 0.469 | -- | -- | -- | -0.043 | 2.39 | -- | -- | -- | -- |
| 74.46 | 0.402 | 3.29 | -- | -- | -0.683 | -- | -- | -0.0981 | -- | 29.06 | 1139 | -- | -- |
| 95.68 | 0.457 | 3.28 | -- | -- | -- | -- | -- | -0.0337 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 62.67 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 10 |
| 29 | 63.34 | temperature | 25 | 720 | > th | dose dependent | sin | 14 | NA |
| 34 | 63.55 | temperature | 30 | 720 | > th | dose independent | rect. | 16 | 3 |
| 95 | 64.61 | humidity | 50 | 720 | > th | dose dependent | rect. | 16 | 8 |
| 96 | 64.65 | humidity | 90 | 720 | < th | dose dependent | rect. | 15 | 7 |
| 97 | 64.66 | humidity | 70 | 720 | > th | dose independent | rect. | 15 | 9 |
| 98 | 64.66 | humidity | 90 | 720 | < th | dose dependent | rect. | 16 | 5 |
| 100 | 64.67 | temperature | 30 | 720 | > th | dose independent | sin | 13 | NA |
| 106 | 64.73 | humidity | 70 | 720 | > th | dose independent | rect. | 15 | 16 |
| 115 | 64.90 | humidity | 80 | 720 | < th | dose independent | rect. | 16 | 5 |
| 117 | 64.93 | humidity | 70 | 720 | > th | dose independent | sin | 13 | NA |
| 128 | 65.03 | temperature | 30 | 720 | < th | dose independent | sin | 14 | NA |
| 134 | 65.10 | temperature | 30 | 720 | < th | dose independent | rect. | 15 | 16 |
| 232 | 65.74 | temperature | 30 | 720 | < th | dose independent | rect. | 16 | 7 |
| 257 | 65.95 | humidity | 70 | 720 | > th | dose dependent | rect. | 19 | 2 |
| 283 | 66.08 | humidity | 70 | 720 | < th | dose independent | sin | 13 | NA |
| 370 | 66.45 | humidity | 90 | 720 | < th | dose dependent | sin | 15 | NA |
| 374 | 66.47 | radiation | 20 | 720 | > th | dose independent | rect. | 16 | 1 |
| 394 | 66.50 | humidity | 50 | 720 | > th | dose dependent | sin | 15 | NA |
| 460 | 66.74 | radiation | 10 | 720 | > th | dose dependent | rect. | 16 | 2 |
| 559 | 67.04 | humidity | 50 | 720 | > th | dose dependent | rect. | 14 | 17 |
| 573 | 67.09 | temperature | 30 | 720 | < th | dose independent | rect. | 15 | 12 |
| 753 | 67.54 | temperature | 30 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 863 | 67.74 | temperature | 30 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 908 | 67.85 | humidity | 80 | 720 | > th | dose independent | rect. | 18 | 1 |
| 948 | 67.89 | radiation | 10 | 720 | < th | dose independent | rect. | 16 | 1 |
| 958 | 67.91 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 4 |
| 968 | 67.94 | temperature | 25 | 720 | > th | dose independent | rect. | 19 | 1 |