BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0114900 Os11g0114900|AK063683
(119 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0114900 Similar to Nonspecific lipid-transfer protein ... 197 2e-51
Os12g0114500 Similar to Nonspecific lipid-transfer protein ... 189 3e-49
AK102455 189 3e-49
Os02g0445300 141 1e-34
AK059819 100 2e-22
Os12g0115000 Similar to Lipid transfer protein LPT II 100 2e-22
Os11g0427800 Similar to Lipid transfer protein LPT III 100 2e-22
D10955 99 7e-22
AK061740 97 2e-21
Os12g0115100 Nonspecific lipid-transfer protein 1 precursor... 96 7e-21
AK059808 96 7e-21
Os12g0115300 Plant lipid transfer protein/Par allergen fami... 96 7e-21
Os11g0116000 Similar to Nonspecific lipid-transfer protein ... 96 8e-21
AK070192 96 8e-21
Os11g0115400 Lipid transfer protein LPT IV 94 2e-20
Os11g0116200 Similar to Nonspecific lipid-transfer protein ... 94 2e-20
Os12g0114800 Similar to Lipid transfer protein 82 1e-16
Os11g0115100 Similar to Lipid transfer protein 82 1e-16
Os08g0131200 Plant lipid transfer protein/Par allergen fami... 77 3e-15
Os12g0115500 Plant lipid transfer protein/Par allergen fami... 77 3e-15
AK058805 75 1e-14
Os06g0539500 71 2e-13
Os05g0477900 Similar to Nonspecific lipid-transfer protein ... 67 2e-12
Os01g0822900 Similar to Lipid transfer protein 64 2e-11
Os01g0219500 Plant lipid transfer protein/Par allergen fami... 62 8e-11
>Os11g0114900 Similar to Nonspecific lipid-transfer protein (LTP) (Fragment)
Length = 119
Score = 197 bits (501), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 100/119 (84%), Positives = 100/119 (84%)
Query: 1 MARPANNNYXXXXXXXXXXXXXXXXXXXTCGQVVSMLAPCIMYATGRVSAPTGGCCDGVR 60
MARPANNNY TCGQVVSMLAPCIMYATGRVSAPTGGCCDGVR
Sbjct: 1 MARPANNNYAAAVMVVALLVAAPAASAVTCGQVVSMLAPCIMYATGRVSAPTGGCCDGVR 60
Query: 61 TLNSAAATTADRQTTCACLKQQTSAMGGLRPDLVAGIPSKCDVNIPYAISPSTDCSRVH 119
TLNSAAATTADRQTTCACLKQQTSAMGGLRPDLVAGIPSKCDVNIPYAISPSTDCSRVH
Sbjct: 61 TLNSAAATTADRQTTCACLKQQTSAMGGLRPDLVAGIPSKCDVNIPYAISPSTDCSRVH 119
>Os12g0114500 Similar to Nonspecific lipid-transfer protein (LTP) (Fragment)
Length = 119
Score = 189 bits (481), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 97/119 (81%), Positives = 97/119 (81%)
Query: 1 MARPANNNYXXXXXXXXXXXXXXXXXXXTCGQVVSMLAPCIMYATGRVSAPTGGCCDGVR 60
MAR ANN Y TCGQVVSMLAPCIMYATGRVSAPTGGCCDGVR
Sbjct: 1 MARAANNKYVAAVMVVALLLAAPAASAVTCGQVVSMLAPCIMYATGRVSAPTGGCCDGVR 60
Query: 61 TLNSAAATTADRQTTCACLKQQTSAMGGLRPDLVAGIPSKCDVNIPYAISPSTDCSRVH 119
TLNSAAATTADRQTTCACLKQQTSAMGGLRPDLVAGIPSKC VNIPYAISPSTDCSRVH
Sbjct: 61 TLNSAAATTADRQTTCACLKQQTSAMGGLRPDLVAGIPSKCGVNIPYAISPSTDCSRVH 119
>AK102455
Length = 119
Score = 189 bits (481), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 97/119 (81%), Positives = 97/119 (81%)
Query: 1 MARPANNNYXXXXXXXXXXXXXXXXXXXTCGQVVSMLAPCIMYATGRVSAPTGGCCDGVR 60
MAR ANN Y TCGQVVSMLAPCIMYATGRVSAPTGGCCDGVR
Sbjct: 1 MARAANNKYVAAVMVVALLLAAPAASAVTCGQVVSMLAPCIMYATGRVSAPTGGCCDGVR 60
Query: 61 TLNSAAATTADRQTTCACLKQQTSAMGGLRPDLVAGIPSKCDVNIPYAISPSTDCSRVH 119
TLNSAAATTADRQTTCACLKQQTSAMGGLRPDLVAGIPSKC VNIPYAISPSTDCSRVH
Sbjct: 61 TLNSAAATTADRQTTCACLKQQTSAMGGLRPDLVAGIPSKCGVNIPYAISPSTDCSRVH 119
>Os02g0445300
Length = 75
Score = 141 bits (355), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 71/78 (91%), Positives = 72/78 (92%), Gaps = 3/78 (3%)
Query: 42 MYATGRVSAPTGGCCDGVRTLNSAAATTADRQTTCACLKQQTSAMGGLRPDLVAGIPSKC 101
MYATGRVSAPTGGCCDGVRTLNSAAA D QTTCAC+KQQTS MGGLRPDLVAGIPSKC
Sbjct: 1 MYATGRVSAPTGGCCDGVRTLNSAAA---DHQTTCACIKQQTSGMGGLRPDLVAGIPSKC 57
Query: 102 DVNIPYAISPSTDCSRVH 119
VNIPYAISPSTDCSRVH
Sbjct: 58 GVNIPYAISPSTDCSRVH 75
>AK059819
Length = 117
Score = 100 bits (249), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/91 (57%), Positives = 63/91 (69%), Gaps = 1/91 (1%)
Query: 29 TCGQVVSMLAPCIMYATGRVSAPTGGCCDGVRTLNSAAATTADRQTTCACLKQQTSAMGG 88
+CGQV S ++PC+ YA G S P+ CC GVR+LNSAA TTADR+T C CLK ++ G
Sbjct: 28 SCGQVNSAVSPCLSYARGG-SGPSAACCSGVRSLNSAATTTADRRTACNCLKNVAGSISG 86
Query: 89 LRPDLVAGIPSKCDVNIPYAISPSTDCSRVH 119
L A IPSKC V+IPY ISPS DCS V+
Sbjct: 87 LNAGNAASIPSKCGVSIPYTISPSIDCSSVN 117
>Os12g0115000 Similar to Lipid transfer protein LPT II
Length = 110
Score = 100 bits (249), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/91 (57%), Positives = 63/91 (69%), Gaps = 1/91 (1%)
Query: 29 TCGQVVSMLAPCIMYATGRVSAPTGGCCDGVRTLNSAAATTADRQTTCACLKQQTSAMGG 88
+CGQV S ++PC+ YA G S P+ CC GVR+LNSAA TTADR+T C CLK ++ G
Sbjct: 21 SCGQVNSAVSPCLSYARGG-SGPSAACCSGVRSLNSAATTTADRRTACNCLKNVAGSISG 79
Query: 89 LRPDLVAGIPSKCDVNIPYAISPSTDCSRVH 119
L A IPSKC V+IPY ISPS DCS V+
Sbjct: 80 LNAGNAASIPSKCGVSIPYTISPSIDCSSVN 110
>Os11g0427800 Similar to Lipid transfer protein LPT III
Length = 117
Score = 100 bits (249), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 50/91 (54%), Positives = 60/91 (65%)
Query: 29 TCGQVVSMLAPCIMYATGRVSAPTGGCCDGVRTLNSAAATTADRQTTCACLKQQTSAMGG 88
TCGQV S + PC+ YA G + P+ CC+GVR+L SAA TTADR+T C CLK + G
Sbjct: 27 TCGQVNSAVGPCLTYARGGGAGPSAACCNGVRSLKSAARTTADRRTACNCLKNAARGIKG 86
Query: 89 LRPDLVAGIPSKCDVNIPYAISPSTDCSRVH 119
L A IPSKC V++PY IS S DCSRV
Sbjct: 87 LNAGNAASIPSKCGVSVPYTISASIDCSRVR 117
>D10955
Length = 50
Score = 99.0 bits (245), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 47/50 (94%), Positives = 47/50 (94%)
Query: 70 ADRQTTCACLKQQTSAMGGLRPDLVAGIPSKCDVNIPYAISPSTDCSRVH 119
ADRQTTCACLKQQTSAMGGLR DLV GIPSKCDVNIPY ISPSTDCSRVH
Sbjct: 1 ADRQTTCACLKQQTSAMGGLRXDLVXGIPSKCDVNIPYGISPSTDCSRVH 50
>AK061740
Length = 118
Score = 97.4 bits (241), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/91 (56%), Positives = 62/91 (68%), Gaps = 1/91 (1%)
Query: 29 TCGQVVSMLAPCIMYATGRVSAPTGGCCDGVRTLNSAAATTADRQTTCACLKQQTSAMGG 88
TCGQV S +APCI Y TGR S T GCC+GV+ LN+AA TTADRQ C CLK ++
Sbjct: 29 TCGQVGSAIAPCISYVTGR-SGLTQGCCNGVKGLNNAARTTADRQAACRCLKSLAGSIKS 87
Query: 89 LRPDLVAGIPSKCDVNIPYAISPSTDCSRVH 119
L VAG+P KC VN+ + IS STDC++V
Sbjct: 88 LNLGTVAGVPGKCGVNVGFPISLSTDCNKVS 118
>Os12g0115100 Nonspecific lipid-transfer protein 1 precursor (LTP 1) (PAPI)
Length = 116
Score = 95.5 bits (236), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 49/90 (54%), Positives = 60/90 (66%), Gaps = 1/90 (1%)
Query: 29 TCGQVVSMLAPCIMYATGRVSAPTGGCCDGVRTLNSAAATTADRQTTCACLKQQTSAMGG 88
TCGQV S + PC+ YA G + P+ CC GVR+L +AA+TTADR+T C CLK + G
Sbjct: 27 TCGQVNSAVGPCLTYARGG-AGPSAACCSGVRSLKAAASTTADRRTACNCLKNAARGIKG 85
Query: 89 LRPDLVAGIPSKCDVNIPYAISPSTDCSRV 118
L A IPSKC V++PY IS S DCSRV
Sbjct: 86 LNAGNAASIPSKCGVSVPYTISASIDCSRV 115
>AK059808
Length = 116
Score = 95.5 bits (236), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 49/90 (54%), Positives = 60/90 (66%), Gaps = 1/90 (1%)
Query: 29 TCGQVVSMLAPCIMYATGRVSAPTGGCCDGVRTLNSAAATTADRQTTCACLKQQTSAMGG 88
TCGQV S + PC+ YA G + P+ CC GVR+L +AA+TTADR+T C CLK + G
Sbjct: 27 TCGQVNSAVGPCLTYARGG-AGPSAACCSGVRSLKAAASTTADRRTACNCLKNAARGIKG 85
Query: 89 LRPDLVAGIPSKCDVNIPYAISPSTDCSRV 118
L A IPSKC V++PY IS S DCSRV
Sbjct: 86 LNAGNAASIPSKCGVSVPYTISASIDCSRV 115
>Os12g0115300 Plant lipid transfer protein/Par allergen family protein
Length = 118
Score = 95.5 bits (236), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 51/91 (56%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Query: 29 TCGQVVSMLAPCIMYATGRVSAPTGGCCDGVRTLNSAAATTADRQTTCACLKQQTSAMGG 88
TCGQV S +APCI Y TGR T GCC+GV+ LN+AA TTADRQ C CLK +
Sbjct: 29 TCGQVGSAIAPCISYVTGR-GGLTQGCCNGVKGLNNAARTTADRQAACRCLKTLAGTIKS 87
Query: 89 LRPDLVAGIPSKCDVNIPYAISPSTDCSRVH 119
L AGIP KC VN+ + IS STDCS+V
Sbjct: 88 LNLGAAAGIPGKCGVNVGFPISLSTDCSKVS 118
>Os11g0116000 Similar to Nonspecific lipid-transfer protein 1 (LTP 1) (Major
allergen Pru d 3)
Length = 118
Score = 95.5 bits (236), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 51/91 (56%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Query: 29 TCGQVVSMLAPCIMYATGRVSAPTGGCCDGVRTLNSAAATTADRQTTCACLKQQTSAMGG 88
TCGQV S +APCI Y TGR T GCC+GV+ LN+AA TTADRQ C CLK +
Sbjct: 29 TCGQVGSAIAPCISYVTGR-GGLTQGCCNGVKGLNNAARTTADRQAACRCLKTLAGTIKS 87
Query: 89 LRPDLVAGIPSKCDVNIPYAISPSTDCSRVH 119
L AGIP KC VN+ + IS STDCS+V
Sbjct: 88 LNLGAAAGIPGKCGVNVGFPISLSTDCSKVS 118
>AK070192
Length = 118
Score = 95.5 bits (236), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 51/91 (56%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Query: 29 TCGQVVSMLAPCIMYATGRVSAPTGGCCDGVRTLNSAAATTADRQTTCACLKQQTSAMGG 88
TCGQV S +APCI Y TGR T GCC+GV+ LN+AA TTADRQ C CLK +
Sbjct: 29 TCGQVGSAIAPCISYVTGR-GGLTQGCCNGVKGLNNAARTTADRQAACRCLKTLAGTIKS 87
Query: 89 LRPDLVAGIPSKCDVNIPYAISPSTDCSRVH 119
L AGIP KC VN+ + IS STDCS+V
Sbjct: 88 LNLGAAAGIPGKCGVNVGFPISLSTDCSKVS 118
>Os11g0115400 Lipid transfer protein LPT IV
Length = 116
Score = 94.4 bits (233), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/90 (53%), Positives = 60/90 (66%), Gaps = 1/90 (1%)
Query: 29 TCGQVVSMLAPCIMYATGRVSAPTGGCCDGVRTLNSAAATTADRQTTCACLKQQTSAMGG 88
TCGQV S + PC+ YA G + P+ CC GVR+L +AA++TADR+T C CLK + G
Sbjct: 27 TCGQVNSAVGPCLTYARGG-AGPSAACCSGVRSLKAAASSTADRRTACNCLKNAARGIKG 85
Query: 89 LRPDLVAGIPSKCDVNIPYAISPSTDCSRV 118
L A IPSKC V++PY IS S DCSRV
Sbjct: 86 LNAGNAASIPSKCGVSVPYTISASIDCSRV 115
>Os11g0116200 Similar to Nonspecific lipid-transfer protein 1 (LTP 1) (Major
allergen Pru d 3)
Length = 132
Score = 94.4 bits (233), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/88 (56%), Positives = 60/88 (68%), Gaps = 1/88 (1%)
Query: 29 TCGQVVSMLAPCIMYATGRVSAPTGGCCDGVRTLNSAAATTADRQTTCACLKQQTSAMGG 88
TCGQV S +APCI Y TGR S T GCC+GV+ LN+AA TTADRQ C CLK ++
Sbjct: 29 TCGQVGSAIAPCISYVTGR-SGLTQGCCNGVKGLNNAARTTADRQAACRCLKSLAGSIKS 87
Query: 89 LRPDLVAGIPSKCDVNIPYAISPSTDCS 116
L VAG+P KC VN+ + IS STDC+
Sbjct: 88 LNLGTVAGVPGKCGVNVGFPISLSTDCN 115
>Os12g0114800 Similar to Lipid transfer protein
Length = 121
Score = 81.6 bits (200), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 61/91 (67%)
Query: 29 TCGQVVSMLAPCIMYATGRVSAPTGGCCDGVRTLNSAAATTADRQTTCACLKQQTSAMGG 88
+CG V S +APC+ Y GR S+P+ CC GVRTLN A+++ADR+T C+CLK S+
Sbjct: 31 SCGDVTSSIAPCLSYVMGRESSPSSSCCSGVRTLNGKASSSADRRTACSCLKNMASSFRN 90
Query: 89 LRPDLVAGIPSKCDVNIPYAISPSTDCSRVH 119
L A IPSKC V++ + IS S DCS+++
Sbjct: 91 LNMGNAASIPSKCGVSVAFPISTSVDCSKIN 121
>Os11g0115100 Similar to Lipid transfer protein
Length = 121
Score = 81.6 bits (200), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 61/91 (67%)
Query: 29 TCGQVVSMLAPCIMYATGRVSAPTGGCCDGVRTLNSAAATTADRQTTCACLKQQTSAMGG 88
+CG V S +APC+ Y GR S+P+ CC GVRTLN A+++ADR+T C+CLK S+
Sbjct: 31 SCGDVTSSIAPCLSYVMGRESSPSSSCCSGVRTLNGKASSSADRRTACSCLKNMASSFRN 90
Query: 89 LRPDLVAGIPSKCDVNIPYAISPSTDCSRVH 119
L A IPSKC V++ + IS S DCS+++
Sbjct: 91 LNMGNAASIPSKCGVSVAFPISTSVDCSKIN 121
>Os08g0131200 Plant lipid transfer protein/Par allergen family protein
Length = 120
Score = 77.0 bits (188), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 54/90 (60%)
Query: 29 TCGQVVSMLAPCIMYATGRVSAPTGGCCDGVRTLNSAAATTADRQTTCACLKQQTSAMGG 88
TCG V + L PC+ Y TG+ +AP+G CC GVR L + TA+R+ C C+K+ + G
Sbjct: 30 TCGDVDASLLPCVAYLTGKAAAPSGDCCAGVRHLRTLPVGTAERRFACDCVKKAAARFKG 89
Query: 89 LRPDLVAGIPSKCDVNIPYAISPSTDCSRV 118
L D + +P+KC +P+ +S DC+ +
Sbjct: 90 LNGDAIRDLPAKCAAPLPFPLSLDFDCNTI 119
>Os12g0115500 Plant lipid transfer protein/Par allergen family protein
Length = 93
Score = 76.6 bits (187), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Query: 41 IMYATGRVSAPTGGCCDGVRTLNSAAATTADRQTTCACLKQQTSAMGGLRPDLVAGIPSK 100
I+ GR S T GCC+GV+ LN+AA TTADRQ C CLK ++ L VAG+P K
Sbjct: 16 ILNMAGR-SGLTQGCCNGVKGLNNAARTTADRQAACRCLKSLAGSIKSLNLGTVAGVPGK 74
Query: 101 CDVNIPYAISPSTDCSRV 118
C VN+ + IS STDC++V
Sbjct: 75 CGVNVGFPISLSTDCNKV 92
>AK058805
Length = 75
Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 49/82 (59%), Gaps = 11/82 (13%)
Query: 37 LAPCIMYATGRVSAPTGGCCDGVRTLNSAAATTADRQTTCACLKQQTSAMGGLRPDLVAG 96
L PC+ YA G GVR+L +AA++TADR+T C CLK + GL A
Sbjct: 4 LGPCLTYARG-----------GVRSLKAAASSTADRRTACNCLKNAARGIKGLNAGNAAS 52
Query: 97 IPSKCDVNIPYAISPSTDCSRV 118
IPSKC V++PY IS S DCSRV
Sbjct: 53 IPSKCGVSVPYTISASIDCSRV 74
>Os06g0539500
Length = 136
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 29 TCGQVVSMLAPCIMYATGRVSAPTGGCCDGVRTLNSAAATTADRQTTCACLKQQTSA-MG 87
+C VV+ + PC+ + G P+G CCDG+ L +AAATT DRQ C CLK S
Sbjct: 47 SCSDVVADVTPCLGFLQGDDDHPSGECCDGLSGLVAAAATTEDRQAACECLKSAVSGQFT 106
Query: 88 GLRPDLVAGIPSKCDVNIPYAISPSTDCSR 117
+ +P+ C +++PY SP DCS+
Sbjct: 107 AVEAAPARDLPADCGLSLPYTFSPDVDCSQ 136
>Os05g0477900 Similar to Nonspecific lipid-transfer protein 1 (LTP 1) (Major
allergen Pru d 3)
Length = 129
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 55/92 (59%), Gaps = 2/92 (2%)
Query: 29 TCGQVVSMLAPCIMYATGRVSAPTGGCCDGVRTLNSAAATTADRQTTCACLKQQTS-AMG 87
+C V + L PC+ Y + P CC G+R++ +AA TTADR+ C CLK + A G
Sbjct: 39 SCSTVYNTLLPCLPYVQSGGAVPAA-CCGGIRSVVAAARTTADRRAACTCLKNVAAGAAG 97
Query: 88 GLRPDLVAGIPSKCDVNIPYAISPSTDCSRVH 119
G AG+P +C V++P+ ISP+ +C+ V+
Sbjct: 98 GPYISRAAGLPGRCGVSVPFKISPNVNCNAVN 129
>Os01g0822900 Similar to Lipid transfer protein
Length = 120
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 53/92 (57%), Gaps = 2/92 (2%)
Query: 29 TCGQVVSMLAPCIMYATGRVSAPTGGCCDGVRTLNSAAATTADRQTTCACLKQ-QTSAMG 87
+C V + L PC+ Y + P CC G+++L +AA T DR+T C CLK A G
Sbjct: 30 SCSAVYNTLMPCLPYVQAGGTVPRA-CCGGIQSLLAAANNTPDRRTICGCLKNVANGASG 88
Query: 88 GLRPDLVAGIPSKCDVNIPYAISPSTDCSRVH 119
G A +PSKC+V++PY IS S +C+ ++
Sbjct: 89 GPYITRAAALPSKCNVSLPYKISTSVNCNAIN 120
>Os01g0219500 Plant lipid transfer protein/Par allergen family protein
Length = 127
Score = 62.4 bits (150), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 30 CGQVVSMLAPCIMYATGRVS-APTGGCCDGVRTLNSAAATTADRQTTCACLKQQTSAMGG 88
CGQV+ ++APC+ Y G P G CCD + LN A ADR C C+K +
Sbjct: 32 CGQVMQLMAPCMPYLAGAPGMTPYGICCDSLGVLNRMAPAPADRVAVCNCVKDAAAGFPA 91
Query: 89 LRPDLVAGIPSKCDVNIPYAISPSTDCSRV 118
+ + +P+ C ++I + I+P+ DC++V
Sbjct: 92 VDFSRASALPAACGLSISFTIAPNMDCNQV 121
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.130 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,540,658
Number of extensions: 114626
Number of successful extensions: 392
Number of sequences better than 1.0e-10: 26
Number of HSP's gapped: 378
Number of HSP's successfully gapped: 26
Length of query: 119
Length of database: 17,035,801
Length adjustment: 85
Effective length of query: 34
Effective length of database: 12,597,611
Effective search space: 428318774
Effective search space used: 428318774
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 149 (62.0 bits)