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Os05g0477900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Nonspecific lipid-transfer protein 1 (LTP 1) (Major allergen Pru d 3).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 14.6 (0.0354) R2 : 0.822
β1 : -1.6 (0.139) R2dD : 0.0834 R2D : 0.278
β2 : 1.53 (0.0794) R2dC : 0.146 R2C : 0.114
β3 : -3.73 (0.165) R2dE : 0.294 R2E : 0.347
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -10.7 (0.681) R2dD*E : 0.152 R2D*E : 0.186
γ1 : 0.207 (0.0723) R2dN8 : 0.00527 R2N8 : -0.0273
σ : 0.57
deviance : 149.84
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_____
C
peak time of C : 18.9
E
wheather : radiation
threshold : 0.9964
memory length : 4321
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 17.9
open length of G : 11.3

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
149.84 0.575 14.6 -1.6 1.53 -3.73 -0.0245 -10.7 0.207 18.8 0.9964 4321 17.9 11.3
226.22 0.701 14.6 -1.63 1.51 -3.7 -0.0525 -- 0.193 18.8 0.9933 4318 17.9 11.8
149.84 0.57 14.6 -1.6 1.53 -3.73 -- -10.7 0.207 18.9 0.9964 4321 17.9 11.3
177.85 0.621 14.6 -3.1 1.51 -2.93 -- -- -0.373 18.7 1.026 4319 17.8 12.1
272.77 0.769 14.6 -1.6 -- -3.67 -- -10.7 0.207 -- 0.9964 4321 17.9 11.3
364.35 0.895 14.5 -3.71 1.41 -- -0.301 -- -0.114 19 -- -- -- --
364.59 0.894 14.5 -3.71 1.41 -- -- -- -0.115 19 -- -- -- --
190.9 0.643 14.6 -3.77 -- -2.79 -- -- -0.424 -- 0.8125 12447 17.8 12.6
393.28 0.924 14.6 -- 1.49 -2.89 -- -- -0.222 18.7 0.9986 7200 17.8 12.1
468.56 1.01 14.5 -3.74 -- -- -- -- -0.141 -- -- -- -- --
726.98 1.26 14.4 -- 1.45 -- -- -- 0.298 18.9 -- -- -- --
459.24 0.998 14.6 -- -- -2.82 -- -- -0.33 -- 2.519 11439 17 12.9
836.73 1.35 14.4 -- -- -- -- -- 0.274 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 156.30 radiation 10.0 14400 < th dose dependent rect. 18 6
2 156.42 radiation 10.0 14400 < th dose dependent rect. 18 8
9 156.72 radiation 10.0 14400 < th dose dependent rect. 18 2
20 157.27 radiation 20.0 14400 < th dose independent rect. 16 15
45 158.65 wind 5.0 43200 < th dose dependent rect. 3 1
49 158.88 radiation 1.0 14400 < th dose independent rect. 18 11
63 159.96 wind 3.0 43200 < th dose independent rect. 3 1
64 160.00 wind 3.0 43200 > th dose independent rect. 3 1
65 160.07 radiation 1.0 14400 < th dose independent rect. 18 6
68 160.15 radiation 1.0 14400 < th dose independent rect. 18 9
72 160.18 radiation 1.0 14400 < th dose independent rect. 18 2
90 161.64 wind 1.0 43200 > th dose dependent rect. 3 1
91 161.75 humidity 90.0 43200 < th dose independent rect. 19 2
93 161.86 radiation 1.0 4320 > th dose independent rect. 18 11
96 162.19 wind 9.0 43200 < th dose dependent rect. 3 1
102 163.15 wind 3.0 43200 > th dose dependent rect. 5 1
103 163.28 radiation 1.0 4320 > th dose independent rect. 18 1
118 164.25 radiation 30.0 14400 < th dose independent rect. 15 17
123 164.65 wind 5.0 43200 < th dose independent rect. 5 1
134 164.74 radiation 1.0 4320 < th dose independent rect. 16 14
139 165.58 radiation 30.0 14400 > th dose independent rect. 7 1
159 165.94 radiation 20.0 4320 < th dose independent rect. 6 2
162 166.04 radiation 20.0 4320 < th dose independent rect. 2 6
163 166.04 radiation 20.0 4320 < th dose independent rect. 19 13
166 166.06 radiation 20.0 4320 < th dose independent rect. 22 10
168 166.07 wind 3.0 43200 > th dose dependent rect. 3 11
171 166.11 radiation 1.0 4320 > th dose independent rect. 16 14
176 166.30 wind 3.0 43200 > th dose dependent rect. 5 8
181 166.73 radiation 1.0 4320 > th dose dependent rect. 17 13
182 166.81 humidity 90.0 43200 > th dose independent rect. 9 1
197 167.10 wind 9.0 43200 < th dose dependent rect. 3 10
205 167.34 wind 5.0 43200 < th dose independent rect. 5 8
222 167.89 wind 3.0 43200 > th dose dependent rect. 24 14
232 168.28 radiation 1.0 14400 < th dose independent rect. 17 17
233 168.29 humidity 90.0 43200 > th dose dependent rect. 19 2
241 168.47 wind 5.0 43200 > th dose independent rect. 5 9
253 168.84 wind 5.0 43200 < th dose independent rect. 9 4
258 168.91 radiation 30.0 14400 > th dose dependent rect. 15 17
292 169.15 wind 5.0 43200 > th dose independent rect. 9 4
294 169.17 radiation 1.0 4320 < th dose independent sin 13 NA
309 169.53 wind 7.0 43200 < th dose dependent rect. 8 4
311 169.55 humidity 90.0 43200 < th dose independent rect. 8 2
334 170.01 radiation 1.0 14400 > th dose independent rect. 17 17
349 170.24 radiation 20.0 14400 > th dose dependent rect. 16 15
350 170.29 humidity 90.0 43200 > th dose independent rect. 20 1
393 170.66 radiation 1.0 4320 > th dose independent sin 13 NA
394 170.66 humidity 80.0 43200 > th dose dependent rect. 17 1
414 170.77 radiation 1.0 14400 < th dose independent rect. 7 23
440 171.00 wind 7.0 43200 < th dose dependent rect. 10 2
448 171.03 humidity 90.0 43200 > th dose dependent rect. 9 1
454 171.07 humidity 80.0 43200 > th dose independent rect. 16 1
458 171.10 humidity 90.0 43200 < th dose independent rect. 8 14
479 171.27 precipitation 0.1 43200 < th dose independent rect. 15 4
480 171.27 precipitation 0.1 43200 < th dose dependent rect. 15 4
497 171.44 precipitation 0.1 43200 > th dose independent rect. 15 4
501 171.49 radiation 1.0 14400 > th dose dependent rect. 18 1
516 171.53 radiation 20.0 4320 < th dose dependent rect. 17 13
524 171.58 wind 3.0 43200 > th dose dependent sin 5 NA
543 171.78 radiation 20.0 14400 < th dose independent rect. 16 2
545 171.80 radiation 20.0 14400 < th dose independent rect. 16 8
561 171.84 radiation 20.0 14400 < th dose independent rect. 16 4
568 171.85 radiation 1.0 14400 < th dose dependent rect. 16 10
579 171.86 radiation 40.0 4320 > th dose dependent rect. 13 20
600 171.98 humidity 90.0 43200 > th dose independent rect. 17 5
611 172.06 wind 5.0 43200 < th dose independent sin 4 NA
616 172.09 radiation 1.0 14400 < th dose dependent rect. 16 3
618 172.10 atmosphere 1005.0 43200 > th dose independent rect. 16 1
644 172.15 radiation 1.0 14400 > th dose independent rect. 7 23
708 172.75 radiation 1.0 14400 < th dose independent rect. 5 1
714 172.78 wind 5.0 43200 < th dose independent rect. 24 15
725 172.85 radiation 40.0 4320 < th dose dependent rect. 17 15
729 172.88 humidity 90.0 43200 < th dose independent rect. 11 11
732 172.90 radiation 1.0 14400 > th dose independent rect. 5 1
750 173.03 atmosphere 1005.0 43200 < th dose independent rect. 16 1
755 173.08 wind 5.0 43200 > th dose independent sin 4 NA
772 173.18 humidity 90.0 43200 > th dose independent rect. 8 15
788 173.29 wind 3.0 43200 > th dose dependent rect. 20 18
794 173.33 radiation 40.0 4320 < th dose independent rect. 7 2
814 173.42 radiation 40.0 4320 < th dose independent rect. 22 11
843 173.55 radiation 40.0 4320 < th dose independent rect. 19 14
863 173.64 radiation 1.0 14400 < th dose independent rect. 5 18
867 173.64 radiation 1.0 14400 < th dose independent rect. 2 22
868 173.64 radiation 1.0 14400 < th dose independent rect. 5 22
869 173.65 radiation 40.0 4320 < th dose independent rect. 2 7
870 173.65 radiation 1.0 14400 < th dose independent rect. 5 14
886 173.66 radiation 1.0 14400 < th dose independent no NA NA
892 173.66 radiation 1.0 14400 < th dose independent rect. 2 17
894 173.66 radiation 1.0 14400 < th dose independent rect. 7 17
905 173.66 radiation 1.0 14400 < th dose independent rect. 22 21
934 173.69 radiation 1.0 14400 < th dose independent rect. 7 12
987 173.86 wind 5.0 43200 > th dose independent rect. 24 15