BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0477900 Os05g0477900|Os05g0477900
(129 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G01870.1 | chr5:337234-337678 FORWARD LENGTH=117 75 1e-14
AT3G08770.2 | chr3:2664330-2664784 REVERSE LENGTH=118 65 1e-11
AT2G38540.1 | chr2:16130418-16130893 FORWARD LENGTH=119 64 3e-11
AT5G59320.1 | chr5:23929051-23929492 FORWARD LENGTH=116 63 3e-11
AT5G59310.1 | chr5:23925296-23925772 REVERSE LENGTH=113 62 1e-10
AT2G38530.1 | chr2:16128481-16128948 FORWARD LENGTH=119 57 2e-09
AT2G15050.1 | chr2:6518888-6519259 FORWARD LENGTH=124 57 4e-09
AT3G51590.1 | chr3:19135828-19136654 REVERSE LENGTH=120 55 7e-09
AT2G18370.1 | chr2:7980687-7981475 FORWARD LENGTH=117 55 8e-09
AT3G51600.1 | chr3:19138661-19139124 REVERSE LENGTH=119 50 4e-07
AT4G33355.1 | chr4:16067097-16067568 FORWARD LENGTH=120 47 4e-06
>AT5G01870.1 | chr5:337234-337678 FORWARD LENGTH=117
Length = 116
Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 55/97 (56%), Gaps = 1/97 (1%)
Query: 34 ARAALSCSTVYNTLLPCLPYVQSGGAVPAACCGGIRSVVXXXXXXXXXXXXXXXLKNVAA 93
+ AA+SC+ V L PC+ YV GGA+P +CC GIR + +K+V
Sbjct: 20 SEAAISCNAVQANLYPCVVYVVQGGAIPYSCCNGIRMLSKQATSASDKQGVCRCIKSVVG 79
Query: 94 GAA-GGPYISRAAGLPGRCGVSVPFKISPNVNCNAVN 129
+ Y+ +AA LPG+CGV +P+KI P+ NCN++
Sbjct: 80 RVSYSSIYLKKAAALPGKCGVKLPYKIDPSTNCNSIK 116
>AT3G08770.2 | chr3:2664330-2664784 REVERSE LENGTH=118
Length = 117
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
Query: 35 RAALSCSTVYNTLLPCLPYVQSGGAVPAACCGGIRSVVXXXXXXXXXXXXXXXLKNVAAG 94
AA+SC+TV L PCL YV GG VP CC G+ ++ +K+ G
Sbjct: 18 EAAVSCNTVIADLYPCLSYVTQGGPVPTLCCNGLTTLKSQAQTSVDRQGVCRCIKSAIGG 77
Query: 95 AAGGPY-ISRAAGLPGRCGVSVPFKISPNVNCNA 127
P I A LP +CGV +P+K SP+ +C++
Sbjct: 78 LTLSPRTIQNALELPSKCGVDLPYKFSPSTDCDS 111
>AT2G38540.1 | chr2:16130418-16130893 FORWARD LENGTH=119
Length = 118
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 51/97 (52%)
Query: 32 VVARAALSCSTVYNTLLPCLPYVQSGGAVPAACCGGIRSVVXXXXXXXXXXXXXXXLKNV 91
+ + AALSC +V + L C+ YV GG +P ACC G++++ ++
Sbjct: 21 ITSNAALSCGSVNSNLAACIGYVLQGGVIPPACCSGVKNLNSIAKTTPDRQQACNCIQGA 80
Query: 92 AAGAAGGPYISRAAGLPGRCGVSVPFKISPNVNCNAV 128
A G RAAG+P CGV++P+KIS + NC V
Sbjct: 81 ARALGSGLNAGRAAGIPKACGVNIPYKISTSTNCKTV 117
>AT5G59320.1 | chr5:23929051-23929492 FORWARD LENGTH=116
Length = 115
Score = 63.2 bits (152), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 55/100 (55%), Gaps = 3/100 (3%)
Query: 31 VVVARAALSCSTVYNTLLPCLPYVQSGGAVPAACCGGIRSVVXXXXXXXXXXXXXXXLKN 90
V AA+SC TV +L PC Y+ GG VP +CC G++++ +++
Sbjct: 18 VASVDAAISCGTVAGSLAPCATYLSKGGLVPPSCCAGVKTLNSMAKTTPDRQQACRCIQS 77
Query: 91 VAAGAAG-GPYISRAAGLPGRCGVSVPFKISPNVNCNAVN 129
A +G P S A+GLPG+CGVS+P+ IS + NCN +
Sbjct: 78 TAKSISGLNP--SLASGLPGKCGVSIPYPISMSTNCNNIK 115
>AT5G59310.1 | chr5:23925296-23925772 REVERSE LENGTH=113
Length = 112
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 52/94 (55%), Gaps = 4/94 (4%)
Query: 36 AALSCSTVYNTLLPCLPYVQSGGAVPAACCGGIRSVVXXXXXXXXXXXXXXXLKNVAAGA 95
AA++C TV ++L PCL Y+ GG VP CC G++ + L++ A
Sbjct: 23 AAITCGTVASSLSPCLGYLSKGGVVPPPCCAGVKKLNGMAQTTPDRQQACRCLQS----A 78
Query: 96 AGGPYISRAAGLPGRCGVSVPFKISPNVNCNAVN 129
A G S A+GLPG+CGVS+P+ IS + NC +
Sbjct: 79 AKGVNPSLASGLPGKCGVSIPYPISTSTNCATIK 112
>AT2G38530.1 | chr2:16128481-16128948 FORWARD LENGTH=119
Length = 118
Score = 57.0 bits (136), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 47/97 (48%)
Query: 32 VVARAALSCSTVYNTLLPCLPYVQSGGAVPAACCGGIRSVVXXXXXXXXXXXXXXXLKNV 91
+ A A +SC TV L C+ Y+ G + CC G+ ++ L++
Sbjct: 21 ITANALMSCGTVNGNLAGCIAYLTRGAPLTQGCCNGVTNLKNMASTTPDRQQACRCLQSA 80
Query: 92 AAGAAGGPYISRAAGLPGRCGVSVPFKISPNVNCNAV 128
A G +RAAGLP C V++P+KIS + NCN V
Sbjct: 81 AKAVGPGLNTARAAGLPSACKVNIPYKISASTNCNTV 117
>AT2G15050.1 | chr2:6518888-6519259 FORWARD LENGTH=124
Length = 123
Score = 56.6 bits (135), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 47/99 (47%), Gaps = 4/99 (4%)
Query: 32 VVARAALSCSTVYNTLLPCLPYVQSGGAVPA--ACCGGIRSVVXXXXXXXXXXXXXXXLK 89
+ A+AALSC V + L PC Y+ +GG CC G+R + +K
Sbjct: 21 ITAKAALSCGEVNSNLKPCTGYLTNGGITSPGPQCCNGVRKLNGMVLTTLDRRQACRCIK 80
Query: 90 NVAAGAAGGPYISRAAGLPGRCGVSVPF--KISPNVNCN 126
N A G RAAG+P RCG+ +P+ +I N CN
Sbjct: 81 NAARNVGPGLNADRAAGIPRRCGIKIPYSTQIRFNTKCN 119
>AT3G51590.1 | chr3:19135828-19136654 REVERSE LENGTH=120
Length = 119
Score = 55.5 bits (132), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 34 ARAALSCSTVYNTLLPCLPYVQSGGAVPAACCGGIRSVVXXXXXXXXXXXXXXXLKNVAA 93
+ + C TV +TL CL Y+ + G +P+ CC G++S+ LK +A
Sbjct: 22 TESTIQCGTVTSTLAQCLTYLTNSGPLPSQCCVGVKSLYQLAQTTPDRKQVCECLK-LAG 80
Query: 94 GAAGGPYISRAAGLPGRCGVSVPFKISPNVNCNAVN 129
G A LP CGVS+P+ IS + NC++++
Sbjct: 81 KEIKGLNTDLVAALPTTCGVSIPYPISFSTNCDSIS 116
>AT2G18370.1 | chr2:7980687-7981475 FORWARD LENGTH=117
Length = 116
Score = 55.5 bits (132), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 3/96 (3%)
Query: 34 ARAALSCSTVYNTLLPCLPYVQSG-GAVPAACCGGIRSVVXXXXXXXXXXXXXXXLKNVA 92
+ +A+SCS V L PC+ Y+ SG G P CC G++S+ +K+VA
Sbjct: 22 SESAISCSVVLQDLQPCVSYLTSGSGNPPETCCDGVKSLAAATTTSADKKAACQCIKSVA 81
Query: 93 AGAAGGPYISRAAGLPGRCGVSVPFKISPNVNCNAV 128
P +++A L CG S+P SP V+C V
Sbjct: 82 NSVTVKPELAQA--LASNCGASLPVDASPTVDCTTV 115
>AT3G51600.1 | chr3:19138661-19139124 REVERSE LENGTH=119
Length = 118
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 42/98 (42%)
Query: 32 VVARAALSCSTVYNTLLPCLPYVQSGGAVPAACCGGIRSVVXXXXXXXXXXXXXXXLKNV 91
+ + AA+SC V +L C Y+ GG +P CC G++ + ++
Sbjct: 21 MASEAAISCGAVTGSLGQCYNYLTRGGFIPRGCCSGVQRLNSLARTTRDRQQACRCIQGA 80
Query: 92 AAGAAGGPYISRAAGLPGRCGVSVPFKISPNVNCNAVN 129
A RAA LPG C V + + IS NCN V
Sbjct: 81 ARALGSRLNAGRAARLPGACRVRISYPISARTNCNTVR 118
>AT4G33355.1 | chr4:16067097-16067568 FORWARD LENGTH=120
Length = 119
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
Query: 36 AALSCSTVYNTLLPCLPYVQSGGAVPAACCGGIRSVVXXXXXXXXXXXXXXXLKNVAAGA 95
A++C V L CLPY+++GG CC G+ S+ LK+V A
Sbjct: 27 EAIACPQVNMYLAQCLPYLKAGGNPSPMCCNGLNSLKAAAPEKADRQVACNCLKSV-ANT 85
Query: 96 AGGPYISRAAGLPGRCGVSVPFKISPNVNCNAVN 129
G A LP +CGV++ S V+CN++N
Sbjct: 86 IPGINDDFAKQLPAKCGVNIGVPFSKTVDCNSIN 119
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.134 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,028,009
Number of extensions: 52306
Number of successful extensions: 146
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 135
Number of HSP's successfully gapped: 11
Length of query: 129
Length of database: 11,106,569
Length adjustment: 87
Effective length of query: 42
Effective length of database: 8,721,377
Effective search space: 366297834
Effective search space used: 366297834
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 106 (45.4 bits)