Os01g0822900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Lipid transfer protein.
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Os01g0822900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Lipid transfer protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 765.32 | 1.3 | 8.86 | 8.38 | 0.719 | 350 | -3.09 | 727 | -0.619 | 13.4 | 15 | 4443 | -- | -- |
| 810.92 | 1.34 | 3.94 | -2.84 | 0.69 | 3.41 | -2.98 | -- | -0.804 | 13.6 | 15 | 4443 | -- | -- |
| 798 | 1.32 | 8.84 | 8.24 | 0.745 | 350 | -- | 727 | -0.645 | 11.8 | 14.99 | 4302 | -- | -- |
| 795.91 | 1.31 | 3.91 | -2.31 | 0.582 | 1.98 | -- | -- | -0.508 | 12.8 | 21.44 | 2550 | -- | -- |
| 832.24 | 1.34 | 8.82 | 8.14 | -- | 350 | -- | 727 | -0.642 | -- | 14.99 | 4267 | -- | -- |
| 832.75 | 1.35 | 3.95 | -2.98 | 0.628 | -- | -2.64 | -- | -0.84 | 13.7 | -- | -- | -- | -- |
| 854.88 | 1.37 | 3.96 | -3.07 | 0.68 | -- | -- | -- | -0.86 | 11.9 | -- | -- | -- | -- |
| 813.35 | 1.33 | 3.87 | -2.11 | -- | 2.42 | -- | -- | -0.452 | -- | 21.09 | 2548 | -- | -- |
| 819.54 | 1.33 | 3.76 | -- | 0.598 | 2.87 | -- | -- | 0.0589 | 11.1 | 21.58 | 42829 | -- | -- |
| 884.03 | 1.39 | 3.97 | -3.09 | -- | -- | -- | -- | -0.869 | -- | -- | -- | -- | -- |
| 1103.82 | 1.55 | 3.88 | -- | 0.721 | -- | -- | -- | -0.518 | 12.2 | -- | -- | -- | -- |
| 844.05 | 1.35 | 3.75 | -- | -- | 2.88 | -- | -- | 0.0846 | -- | 20.46 | 47520 | -- | -- |
| 1136.54 | 1.57 | 3.89 | -- | -- | -- | -- | -- | -0.526 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 763.13 | temperature | 15.0 | 4320 | < th | dose dependent | rect. | 20 | 11 |
| 19 | 763.78 | temperature | 15.0 | 4320 | < th | dose dependent | sin | 9 | NA |
| 31 | 764.47 | temperature | 15.0 | 4320 | < th | dose dependent | rect. | 15 | 16 |
| 51 | 764.80 | temperature | 15.0 | 4320 | < th | dose dependent | rect. | 20 | 17 |
| 54 | 764.86 | temperature | 15.0 | 4320 | < th | dose dependent | rect. | 12 | 19 |
| 74 | 765.08 | temperature | 15.0 | 4320 | < th | dose dependent | rect. | 20 | 21 |
| 167 | 766.61 | temperature | 15.0 | 4320 | < th | dose dependent | no | NA | NA |
| 246 | 772.35 | temperature | 15.0 | 4320 | < th | dose independent | rect. | 3 | 3 |
| 250 | 772.93 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 11 | 2 |
| 251 | 772.98 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 11 | 2 |
| 252 | 772.99 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 19 | 1 |
| 267 | 773.82 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 11 | 2 |
| 269 | 773.93 | temperature | 15.0 | 4320 | < th | dose dependent | rect. | 24 | 1 |
| 273 | 774.39 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 19 | 2 |
| 280 | 774.81 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 16 | 7 |
| 298 | 775.53 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 16 | 7 |
| 310 | 775.76 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 19 | 2 |
| 319 | 775.85 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 7 | 10 |
| 322 | 775.90 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 11 | 14 |
| 323 | 775.91 | temperature | 20.0 | 4320 | < th | dose independent | sin | 18 | NA |
| 325 | 775.93 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 7 | 10 |
| 333 | 776.03 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 10 | 8 |
| 367 | 776.38 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 9 | 9 |
| 369 | 776.38 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 11 | 14 |
| 371 | 776.41 | temperature | 20.0 | 4320 | > th | dose independent | sin | 18 | NA |
| 380 | 776.53 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 9 | 9 |
| 401 | 776.68 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 14 | 4 |
| 433 | 776.95 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 10 | 19 |
| 442 | 776.99 | temperature | 15.0 | 1440 | < th | dose dependent | rect. | 4 | 6 |
| 506 | 777.36 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 10 | 7 |
| 515 | 777.43 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 12 | 3 |
| 522 | 777.49 | radiation | 1.0 | 14400 | > th | dose independent | sin | 21 | NA |
| 525 | 777.53 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 572 | 777.72 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 9 | 20 |
| 581 | 777.76 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 11 | 2 |
| 611 | 777.95 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 10 | 4 |
| 616 | 777.99 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 617 | 777.99 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 9 | 13 |
| 621 | 777.99 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 629 | 778.02 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 16 | 1 |
| 630 | 778.03 | radiation | 1.0 | 14400 | < th | dose independent | sin | 22 | NA |
| 635 | 778.07 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 734 | 778.41 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 6 | 19 |
| 760 | 778.50 | temperature | 15.0 | 1440 | < th | dose dependent | rect. | 4 | 3 |
| 806 | 778.71 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 829 | 778.87 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 6 | 20 |
| 891 | 779.16 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 896 | 779.18 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 19 | 1 |
| 906 | 779.23 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 3 | 14 |
| 909 | 779.25 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 920 | 779.26 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 4 | 13 |
| 926 | 779.26 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 23 | 18 |
| 930 | 779.26 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 21 | 20 |
| 967 | 779.32 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 14 | 1 |