BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0822900 Os01g0822900|AK120044
(120 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G01870.1 | chr5:337234-337678 FORWARD LENGTH=117 86 6e-18
AT2G38540.1 | chr2:16130418-16130893 FORWARD LENGTH=119 80 2e-16
AT5G59310.1 | chr5:23925296-23925772 REVERSE LENGTH=113 80 3e-16
AT5G59320.1 | chr5:23929051-23929492 FORWARD LENGTH=116 79 4e-16
AT3G08770.2 | chr3:2664330-2664784 REVERSE LENGTH=118 79 7e-16
AT3G51590.1 | chr3:19135828-19136654 REVERSE LENGTH=120 77 1e-15
AT2G38530.1 | chr2:16128481-16128948 FORWARD LENGTH=119 75 9e-15
AT3G51600.1 | chr3:19138661-19139124 REVERSE LENGTH=119 71 1e-13
AT2G18370.1 | chr2:7980687-7981475 FORWARD LENGTH=117 71 2e-13
AT4G33355.1 | chr4:16067097-16067568 FORWARD LENGTH=120 68 1e-12
AT2G15050.1 | chr2:6518888-6519259 FORWARD LENGTH=124 57 3e-09
>AT5G01870.1 | chr5:337234-337678 FORWARD LENGTH=117
Length = 116
Score = 85.5 bits (210), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 44/93 (47%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
Query: 29 ISCSAVYNTLMPCLPYVQAGGTVPRACCGGIQSLLAAANNTPDRRTICGCLKNVANGAS- 87
ISC+AV L PC+ YV GG +P +CC GI+ L A + D++ +C C+K+V S
Sbjct: 24 ISCNAVQANLYPCVVYVVQGGAIPYSCCNGIRMLSKQATSASDKQGVCRCIKSVVGRVSY 83
Query: 88 GGPYITRAAALPSKCNVSLPYKISTSVNCNAIN 120
Y+ +AAALP KC V LPYKI S NCN+I
Sbjct: 84 SSIYLKKAAALPGKCGVKLPYKIDPSTNCNSIK 116
>AT2G38540.1 | chr2:16130418-16130893 FORWARD LENGTH=119
Length = 118
Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/91 (42%), Positives = 55/91 (60%)
Query: 29 ISCSAVYNTLMPCLPYVQAGGTVPRACCGGIQSLLAAANNTPDRRTICGCLKNVANGASG 88
+SC +V + L C+ YV GG +P ACC G+++L + A TPDR+ C C++ A
Sbjct: 27 LSCGSVNSNLAACIGYVLQGGVIPPACCSGVKNLNSIAKTTPDRQQACNCIQGAARALGS 86
Query: 89 GPYITRAAALPSKCNVSLPYKISTSVNCNAI 119
G RAA +P C V++PYKISTS NC +
Sbjct: 87 GLNAGRAAGIPKACGVNIPYKISTSTNCKTV 117
>AT5G59310.1 | chr5:23925296-23925772 REVERSE LENGTH=113
Length = 112
Score = 80.1 bits (196), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/92 (45%), Positives = 55/92 (59%), Gaps = 4/92 (4%)
Query: 29 ISCSAVYNTLMPCLPYVQAGGTVPRACCGGIQSLLAAANNTPDRRTICGCLKNVANGASG 88
I+C V ++L PCL Y+ GG VP CC G++ L A TPDR+ C CL++ A G +
Sbjct: 25 ITCGTVASSLSPCLGYLSKGGVVPPPCCAGVKKLNGMAQTTPDRQQACRCLQSAAKGVNP 84
Query: 89 GPYITRAAALPSKCNVSLPYKISTSVNCNAIN 120
+ A+ LP KC VS+PY ISTS NC I
Sbjct: 85 ----SLASGLPGKCGVSIPYPISTSTNCATIK 112
>AT5G59320.1 | chr5:23929051-23929492 FORWARD LENGTH=116
Length = 115
Score = 79.3 bits (194), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/93 (46%), Positives = 57/93 (61%), Gaps = 3/93 (3%)
Query: 29 ISCSAVYNTLMPCLPYVQAGGTVPRACCGGIQSLLAAANNTPDRRTICGCLKNVANGASG 88
ISC V +L PC Y+ GG VP +CC G+++L + A TPDR+ C C+++ A SG
Sbjct: 25 ISCGTVAGSLAPCATYLSKGGLVPPSCCAGVKTLNSMAKTTPDRQQACRCIQSTAKSISG 84
Query: 89 -GPYITRAAALPSKCNVSLPYKISTSVNCNAIN 120
P + A+ LP KC VS+PY IS S NCN I
Sbjct: 85 LNPSL--ASGLPGKCGVSIPYPISMSTNCNNIK 115
>AT3G08770.2 | chr3:2664330-2664784 REVERSE LENGTH=118
Length = 117
Score = 78.6 bits (192), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Query: 29 ISCSAVYNTLMPCLPYVQAGGTVPRACCGGIQSLLAAANNTPDRRTICGCLKNVANGASG 88
+SC+ V L PCL YV GG VP CC G+ +L + A + DR+ +C C+K+ G +
Sbjct: 21 VSCNTVIADLYPCLSYVTQGGPVPTLCCNGLTTLKSQAQTSVDRQGVCRCIKSAIGGLTL 80
Query: 89 GPY-ITRAAALPSKCNVSLPYKISTSVNCNA 118
P I A LPSKC V LPYK S S +C++
Sbjct: 81 SPRTIQNALELPSKCGVDLPYKFSPSTDCDS 111
>AT3G51590.1 | chr3:19135828-19136654 REVERSE LENGTH=120
Length = 119
Score = 77.4 bits (189), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Query: 29 ISCSAVYNTLMPCLPYVQAGGTVPRACCGGIQSLLAAANNTPDRRTICGCLKNVANGASG 88
I C V +TL CL Y+ G +P CC G++SL A TPDR+ +C CLK +A
Sbjct: 26 IQCGTVTSTLAQCLTYLTNSGPLPSQCCVGVKSLYQLAQTTPDRKQVCECLK-LAGKEIK 84
Query: 89 GPYITRAAALPSKCNVSLPYKISTSVNCNAIN 120
G AALP+ C VS+PY IS S NC++I+
Sbjct: 85 GLNTDLVAALPTTCGVSIPYPISFSTNCDSIS 116
>AT2G38530.1 | chr2:16128481-16128948 FORWARD LENGTH=119
Length = 118
Score = 74.7 bits (182), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 52/91 (57%)
Query: 29 ISCSAVYNTLMPCLPYVQAGGTVPRACCGGIQSLLAAANNTPDRRTICGCLKNVANGASG 88
+SC V L C+ Y+ G + + CC G+ +L A+ TPDR+ C CL++ A
Sbjct: 27 MSCGTVNGNLAGCIAYLTRGAPLTQGCCNGVTNLKNMASTTPDRQQACRCLQSAAKAVGP 86
Query: 89 GPYITRAAALPSKCNVSLPYKISTSVNCNAI 119
G RAA LPS C V++PYKIS S NCN +
Sbjct: 87 GLNTARAAGLPSACKVNIPYKISASTNCNTV 117
>AT3G51600.1 | chr3:19138661-19139124 REVERSE LENGTH=119
Length = 118
Score = 71.2 bits (173), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 47/92 (51%)
Query: 29 ISCSAVYNTLMPCLPYVQAGGTVPRACCGGIQSLLAAANNTPDRRTICGCLKNVANGASG 88
ISC AV +L C Y+ GG +PR CC G+Q L + A T DR+ C C++ A
Sbjct: 27 ISCGAVTGSLGQCYNYLTRGGFIPRGCCSGVQRLNSLARTTRDRQQACRCIQGAARALGS 86
Query: 89 GPYITRAAALPSKCNVSLPYKISTSVNCNAIN 120
RAA LP C V + Y IS NCN +
Sbjct: 87 RLNAGRAARLPGACRVRISYPISARTNCNTVR 118
>AT2G18370.1 | chr2:7980687-7981475 FORWARD LENGTH=117
Length = 116
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 53/92 (57%), Gaps = 3/92 (3%)
Query: 29 ISCSAVYNTLMPCLPYVQAG-GTVPRACCGGIQSLLAAANNTPDRRTICGCLKNVANGAS 87
ISCS V L PC+ Y+ +G G P CC G++SL AA + D++ C C+K+VAN +
Sbjct: 26 ISCSVVLQDLQPCVSYLTSGSGNPPETCCDGVKSLAAATTTSADKKAACQCIKSVANSVT 85
Query: 88 GGPYITRAAALPSKCNVSLPYKISTSVNCNAI 119
P + A AL S C SLP S +V+C +
Sbjct: 86 VKPEL--AQALASNCGASLPVDASPTVDCTTV 115
>AT4G33355.1 | chr4:16067097-16067568 FORWARD LENGTH=120
Length = 119
Score = 67.8 bits (164), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Query: 29 ISCSAVYNTLMPCLPYVQAGGTVPRACCGGIQSLLAAANNTPDRRTICGCLKNVANGASG 88
I+C V L CLPY++AGG CC G+ SL AAA DR+ C CLK+VAN
Sbjct: 29 IACPQVNMYLAQCLPYLKAGGNPSPMCCNGLNSLKAAAPEKADRQVACNCLKSVANTIP- 87
Query: 89 GPYITRAAALPSKCNVSLPYKISTSVNCNAIN 120
G A LP+KC V++ S +V+CN+IN
Sbjct: 88 GINDDFAKQLPAKCGVNIGVPFSKTVDCNSIN 119
>AT2G15050.1 | chr2:6518888-6519259 FORWARD LENGTH=124
Length = 123
Score = 56.6 bits (135), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Query: 29 ISCSAVYNTLMPCLPYVQAGG-TVPR-ACCGGIQSLLAAANNTPDRRTICGCLKNVANGA 86
+SC V + L PC Y+ GG T P CC G++ L T DRR C C+KN A
Sbjct: 27 LSCGEVNSNLKPCTGYLTNGGITSPGPQCCNGVRKLNGMVLTTLDRRQACRCIKNAARNV 86
Query: 87 SGGPYITRAAALPSKCNVSLPYKISTSVN 115
G RAA +P +C + +PY N
Sbjct: 87 GPGLNADRAAGIPRRCGIKIPYSTQIRFN 115
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.133 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,157,437
Number of extensions: 70436
Number of successful extensions: 173
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 173
Number of HSP's successfully gapped: 11
Length of query: 120
Length of database: 11,106,569
Length adjustment: 86
Effective length of query: 34
Effective length of database: 8,748,793
Effective search space: 297458962
Effective search space used: 297458962
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 105 (45.1 bits)