BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0822900 Os01g0822900|AK120044
(120 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0822900 Similar to Lipid transfer protein 183 2e-47
Os05g0477900 Similar to Nonspecific lipid-transfer protein ... 137 2e-33
AK059819 85 1e-17
Os12g0115000 Similar to Lipid transfer protein LPT II 84 2e-17
Os11g0115400 Lipid transfer protein LPT IV 82 7e-17
Os12g0115100 Nonspecific lipid-transfer protein 1 precursor... 82 9e-17
AK059808 82 9e-17
Os11g0427800 Similar to Lipid transfer protein LPT III 82 1e-16
AK058805 68 2e-12
Os06g0539500 67 3e-12
Os11g0114900 Similar to Nonspecific lipid-transfer protein ... 64 2e-11
Os12g0114500 Similar to Nonspecific lipid-transfer protein ... 64 3e-11
AK102455 64 3e-11
>Os01g0822900 Similar to Lipid transfer protein
Length = 120
Score = 183 bits (465), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 97/120 (80%), Positives = 97/120 (80%)
Query: 1 MAPRCXXXXXXXXXXXXXXXXXXXXXXXISCSAVYNTLMPCLPYVQAGGTVPRACCGGIQ 60
MAPRC ISCSAVYNTLMPCLPYVQAGGTVPRACCGGIQ
Sbjct: 1 MAPRCATLAVVVVLVAAVVAPPTAVRAAISCSAVYNTLMPCLPYVQAGGTVPRACCGGIQ 60
Query: 61 SLLAAANNTPDRRTICGCLKNVANGASGGPYITRAAALPSKCNVSLPYKISTSVNCNAIN 120
SLLAAANNTPDRRTICGCLKNVANGASGGPYITRAAALPSKCNVSLPYKISTSVNCNAIN
Sbjct: 61 SLLAAANNTPDRRTICGCLKNVANGASGGPYITRAAALPSKCNVSLPYKISTSVNCNAIN 120
>Os05g0477900 Similar to Nonspecific lipid-transfer protein 1 (LTP 1) (Major
allergen Pru d 3)
Length = 129
Score = 137 bits (344), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 65/92 (70%), Positives = 78/92 (84%)
Query: 29 ISCSAVYNTLMPCLPYVQAGGTVPRACCGGIQSLLAAANNTPDRRTICGCLKNVANGASG 88
+SCS VYNTL+PCLPYVQ+GG VP ACCGGI+S++AAA T DRR C CLKNVA GA+G
Sbjct: 38 LSCSTVYNTLLPCLPYVQSGGAVPAACCGGIRSVVAAARTTADRRAACTCLKNVAAGAAG 97
Query: 89 GPYITRAAALPSKCNVSLPYKISTSVNCNAIN 120
GPYI+RAA LP +C VS+P+KIS +VNCNA+N
Sbjct: 98 GPYISRAAGLPGRCGVSVPFKISPNVNCNAVN 129
>AK059819
Length = 117
Score = 84.7 bits (208), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/92 (50%), Positives = 61/92 (66%), Gaps = 1/92 (1%)
Query: 29 ISCSAVYNTLMPCLPYVQAGGTVPRACCGGIQSLLAAANNTPDRRTICGCLKNVANGASG 88
ISC V + + PCL Y + G ACC G++SL +AA T DRRT C CLKNVA G+
Sbjct: 27 ISCGQVNSAVSPCLSYARGGSGPSAACCSGVRSLNSAATTTADRRTACNCLKNVA-GSIS 85
Query: 89 GPYITRAAALPSKCNVSLPYKISTSVNCNAIN 120
G AA++PSKC VS+PY IS S++C+++N
Sbjct: 86 GLNAGNAASIPSKCGVSIPYTISPSIDCSSVN 117
>Os12g0115000 Similar to Lipid transfer protein LPT II
Length = 110
Score = 84.3 bits (207), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/92 (50%), Positives = 61/92 (66%), Gaps = 1/92 (1%)
Query: 29 ISCSAVYNTLMPCLPYVQAGGTVPRACCGGIQSLLAAANNTPDRRTICGCLKNVANGASG 88
ISC V + + PCL Y + G ACC G++SL +AA T DRRT C CLKNVA G+
Sbjct: 20 ISCGQVNSAVSPCLSYARGGSGPSAACCSGVRSLNSAATTTADRRTACNCLKNVA-GSIS 78
Query: 89 GPYITRAAALPSKCNVSLPYKISTSVNCNAIN 120
G AA++PSKC VS+PY IS S++C+++N
Sbjct: 79 GLNAGNAASIPSKCGVSIPYTISPSIDCSSVN 110
>Os11g0115400 Lipid transfer protein LPT IV
Length = 116
Score = 82.4 bits (202), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 44/92 (47%), Positives = 60/92 (65%), Gaps = 1/92 (1%)
Query: 29 ISCSAVYNTLMPCLPYVQAGGTVPRACCGGIQSLLAAANNTPDRRTICGCLKNVANGASG 88
I+C V + + PCL Y + G ACC G++SL AAA++T DRRT C CLKN A G
Sbjct: 26 ITCGQVNSAVGPCLTYARGGAGPSAACCSGVRSLKAAASSTADRRTACNCLKNAARGIK- 84
Query: 89 GPYITRAAALPSKCNVSLPYKISTSVNCNAIN 120
G AA++PSKC VS+PY IS S++C+ ++
Sbjct: 85 GLNAGNAASIPSKCGVSVPYTISASIDCSRVS 116
>Os12g0115100 Nonspecific lipid-transfer protein 1 precursor (LTP 1) (PAPI)
Length = 116
Score = 82.0 bits (201), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 44/92 (47%), Positives = 59/92 (64%), Gaps = 1/92 (1%)
Query: 29 ISCSAVYNTLMPCLPYVQAGGTVPRACCGGIQSLLAAANNTPDRRTICGCLKNVANGASG 88
I+C V + + PCL Y + G ACC G++SL AAA+ T DRRT C CLKN A G
Sbjct: 26 ITCGQVNSAVGPCLTYARGGAGPSAACCSGVRSLKAAASTTADRRTACNCLKNAARGIK- 84
Query: 89 GPYITRAAALPSKCNVSLPYKISTSVNCNAIN 120
G AA++PSKC VS+PY IS S++C+ ++
Sbjct: 85 GLNAGNAASIPSKCGVSVPYTISASIDCSRVS 116
>AK059808
Length = 116
Score = 82.0 bits (201), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 44/92 (47%), Positives = 59/92 (64%), Gaps = 1/92 (1%)
Query: 29 ISCSAVYNTLMPCLPYVQAGGTVPRACCGGIQSLLAAANNTPDRRTICGCLKNVANGASG 88
I+C V + + PCL Y + G ACC G++SL AAA+ T DRRT C CLKN A G
Sbjct: 26 ITCGQVNSAVGPCLTYARGGAGPSAACCSGVRSLKAAASTTADRRTACNCLKNAARGIK- 84
Query: 89 GPYITRAAALPSKCNVSLPYKISTSVNCNAIN 120
G AA++PSKC VS+PY IS S++C+ ++
Sbjct: 85 GLNAGNAASIPSKCGVSVPYTISASIDCSRVS 116
>Os11g0427800 Similar to Lipid transfer protein LPT III
Length = 117
Score = 82.0 bits (201), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/92 (48%), Positives = 59/92 (64%), Gaps = 2/92 (2%)
Query: 29 ISCSAVYNTLMPCLPYVQAGGTVPRA-CCGGIQSLLAAANNTPDRRTICGCLKNVANGAS 87
I+C V + + PCL Y + GG P A CC G++SL +AA T DRRT C CLKN A G
Sbjct: 26 ITCGQVNSAVGPCLTYARGGGAGPSAACCNGVRSLKSAARTTADRRTACNCLKNAARGIK 85
Query: 88 GGPYITRAAALPSKCNVSLPYKISTSVNCNAI 119
G AA++PSKC VS+PY IS S++C+ +
Sbjct: 86 -GLNAGNAASIPSKCGVSVPYTISASIDCSRV 116
>AK058805
Length = 75
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 52/83 (62%), Gaps = 11/83 (13%)
Query: 38 LMPCLPYVQAGGTVPRACCGGIQSLLAAANNTPDRRTICGCLKNVANGASGGPYITRAAA 97
L PCL Y + GG++SL AAA++T DRRT C CLKN A G G AA+
Sbjct: 4 LGPCLTYAR----------GGVRSLKAAASSTADRRTACNCLKNAARGIK-GLNAGNAAS 52
Query: 98 LPSKCNVSLPYKISTSVNCNAIN 120
+PSKC VS+PY IS S++C+ ++
Sbjct: 53 IPSKCGVSVPYTISASIDCSRVS 75
>Os06g0539500
Length = 136
Score = 67.0 bits (162), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 29 ISCSAVYNTLMPCLPYVQAGGTVPR-ACCGGIQSLLAAANNTPDRRTICGCLKNVANGAS 87
+SCS V + PCL ++Q P CC G+ L+AAA T DR+ C CLK+ +G
Sbjct: 46 VSCSDVVADVTPCLGFLQGDDDHPSGECCDGLSGLVAAAATTEDRQAACECLKSAVSGQF 105
Query: 88 GGPYITRAAALPSKCNVSLPYKISTSVNCN 117
A LP+ C +SLPY S V+C+
Sbjct: 106 TAVEAAPARDLPADCGLSLPYTFSPDVDCS 135
>Os11g0114900 Similar to Nonspecific lipid-transfer protein (LTP) (Fragment)
Length = 119
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 53/92 (57%), Gaps = 2/92 (2%)
Query: 30 SCSAVYNTLMPCLPYVQAGGTVPRA-CCGGIQSLLAAANNTPDRRTICGCLKNVANGASG 88
+C V + L PC+ Y + P CC G+++L +AA T DR+T C CLK A G
Sbjct: 29 TCGQVVSMLAPCIMYATGRVSAPTGGCCDGVRTLNSAAATTADRQTTCACLKQ-QTSAMG 87
Query: 89 GPYITRAAALPSKCNVSLPYKISTSVNCNAIN 120
G A +PSKC+V++PY IS S +C+ ++
Sbjct: 88 GLRPDLVAGIPSKCDVNIPYAISPSTDCSRVH 119
>Os12g0114500 Similar to Nonspecific lipid-transfer protein (LTP) (Fragment)
Length = 119
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 52/92 (56%), Gaps = 2/92 (2%)
Query: 30 SCSAVYNTLMPCLPYVQAGGTVPRA-CCGGIQSLLAAANNTPDRRTICGCLKNVANGASG 88
+C V + L PC+ Y + P CC G+++L +AA T DR+T C CLK A G
Sbjct: 29 TCGQVVSMLAPCIMYATGRVSAPTGGCCDGVRTLNSAAATTADRQTTCACLKQ-QTSAMG 87
Query: 89 GPYITRAAALPSKCNVSLPYKISTSVNCNAIN 120
G A +PSKC V++PY IS S +C+ ++
Sbjct: 88 GLRPDLVAGIPSKCGVNIPYAISPSTDCSRVH 119
>AK102455
Length = 119
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 52/92 (56%), Gaps = 2/92 (2%)
Query: 30 SCSAVYNTLMPCLPYVQAGGTVPRA-CCGGIQSLLAAANNTPDRRTICGCLKNVANGASG 88
+C V + L PC+ Y + P CC G+++L +AA T DR+T C CLK A G
Sbjct: 29 TCGQVVSMLAPCIMYATGRVSAPTGGCCDGVRTLNSAAATTADRQTTCACLKQ-QTSAMG 87
Query: 89 GPYITRAAALPSKCNVSLPYKISTSVNCNAIN 120
G A +PSKC V++PY IS S +C+ ++
Sbjct: 88 GLRPDLVAGIPSKCGVNIPYAISPSTDCSRVH 119
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.133 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,796,820
Number of extensions: 140029
Number of successful extensions: 396
Number of sequences better than 1.0e-10: 20
Number of HSP's gapped: 378
Number of HSP's successfully gapped: 20
Length of query: 120
Length of database: 17,035,801
Length adjustment: 86
Effective length of query: 34
Effective length of database: 12,545,397
Effective search space: 426543498
Effective search space used: 426543498
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 149 (62.0 bits)