FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0219500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Plant lipid transfer protein/Par allergen family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.22 (0.0397) R2 : 0.00648
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.144 (0.0835) R2dN8 : 0.00837 R2N8 : 0.00648
σ : 0.747
deviance : 256.22
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
241.8 0.731 3.48 -1.53 0.00976 4.37 -1.18 -22.5 -0.122 6.47 999.9 66 -- --
249.11 0.741 3.22 -0.0389 0.0385 0.358 1.14 -- -0.122 19.2 999.9 66 -- --
243.64 0.727 3.51 -1.7 0.156 4.79 -- -24.9 -0.107 1.4 999.8 58 -- --
249.54 0.736 3.22 0.102 0.218 2.32 -- -- -0.0754 0.676 994.9 461 -- --
245.23 0.729 3.51 -1.65 -- 4.71 -- -24.4 -0.121 -- 999.9 61 -- --
252.63 0.745 3.23 0.0232 0.0286 -- 1.17 -- -0.146 19 -- -- -- --
254 0.746 3.23 -0.0057 0.188 -- -- -- -0.147 0.523 -- -- -- --
248.42 0.734 3.21 -0.0391 -- 1.51 -- -- -0.111 -- 994.9 483 -- --
246.29 0.731 3.22 -- 0.182 1.54 -- -- -0.139 1.17 994.9 441 -- --
256.22 0.748 3.22 0.000825 -- -- -- -- -0.144 -- -- -- -- --
254 0.746 3.23 -- 0.188 -- -- -- -0.147 0.521 -- -- -- --
248.23 0.734 3.22 -- -- 1.57 -- -- -0.128 -- 994.8 439 -- --
256.22 0.747 3.22 -- -- -- -- -- -0.144 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 234.34 atmosphere 1000.0 90 < th dose independent rect. 20 7
2 234.46 atmosphere 1000.0 10 < th dose independent rect. 21 6
19 235.84 atmosphere 1000.0 270 < th dose independent rect. 21 1
22 236.06 atmosphere 1000.0 10 > th dose independent sin 13 NA
27 236.49 atmosphere 1000.0 10 < th dose independent sin 12 NA
31 236.52 atmosphere 1000.0 10 < th dose independent rect. 21 11
42 236.69 atmosphere 1000.0 90 < th dose independent rect. 20 3
76 237.78 atmosphere 1000.0 10 < th dose independent rect. 18 9
87 237.96 atmosphere 1000.0 10 > th dose independent rect. 8 23
91 238.01 wind 3.0 90 < th dose dependent rect. 5 5
121 238.65 atmosphere 1000.0 10 < th dose independent rect. 18 14
126 238.76 atmosphere 1000.0 10 < th dose independent rect. 16 12
135 238.86 atmosphere 1000.0 1440 > th dose independent rect. 21 1
152 238.99 atmosphere 1000.0 10 < th dose independent rect. 21 3
170 239.18 atmosphere 1000.0 10 < th dose independent rect. 21 1
177 239.18 atmosphere 1000.0 10 < th dose dependent rect. 21 1
184 239.20 atmosphere 1000.0 10 < th dose independent rect. 16 16
243 239.65 temperature 25.0 90 < th dose independent rect. 5 3
247 239.66 temperature 25.0 10 < th dose independent rect. 6 2
249 239.66 atmosphere 1005.0 30 < th dose dependent rect. 6 2
261 239.73 atmosphere 1000.0 10 > th dose independent rect. 14 15
294 240.04 wind 3.0 90 < th dose dependent rect. 7 2
305 240.14 atmosphere 1000.0 90 < th dose independent rect. 12 15
307 240.16 humidity 90.0 270 > th dose dependent rect. 4 7
321 240.25 atmosphere 1000.0 90 < th dose independent rect. 20 19
325 240.28 atmosphere 995.0 1440 > th dose independent rect. 9 10
327 240.28 atmosphere 1000.0 10 < th dose independent rect. 14 14
332 240.31 humidity 90.0 270 > th dose dependent rect. 4 11
340 240.33 atmosphere 1000.0 90 > th dose independent rect. 13 15
343 240.35 atmosphere 1000.0 270 > th dose independent rect. 6 23
350 240.38 atmosphere 1000.0 10 < th dose independent rect. 14 18
351 240.38 atmosphere 1000.0 90 < th dose independent rect. 12 20
385 240.53 humidity 90.0 90 < th dose independent rect. 20 3
389 240.54 atmosphere 1015.0 30 < th dose dependent rect. 7 1
408 240.61 atmosphere 995.0 1440 > th dose independent rect. 9 8
415 240.67 atmosphere 1000.0 90 > th dose independent rect. 17 15
426 240.74 humidity 90.0 90 > th dose independent rect. 6 5
430 240.75 atmosphere 995.0 1440 > th dose independent rect. 9 21
449 240.84 atmosphere 1000.0 90 > th dose independent rect. 15 18
455 240.87 atmosphere 1010.0 270 < th dose dependent rect. 4 4
488 241.04 atmosphere 1000.0 90 < th dose independent rect. 20 21
493 241.05 temperature 30.0 10 < th dose dependent rect. 7 1
544 241.25 wind 3.0 30 < th dose independent rect. 7 1
562 241.29 wind 3.0 90 < th dose dependent rect. 5 14
567 241.31 atmosphere 1000.0 90 < th dose independent rect. 17 22
577 241.35 humidity 90.0 90 > th dose dependent rect. 6 5
590 241.40 wind 3.0 90 < th dose dependent rect. 5 18
591 241.41 humidity 90.0 10 > th dose independent rect. 6 6
616 241.46 atmosphere 995.0 1440 > th dose independent rect. 9 23
662 241.60 radiation 1.0 30 > th dose independent rect. 7 1
672 241.62 humidity 90.0 270 > th dose dependent rect. 4 1
676 241.63 humidity 50.0 30 > th dose dependent rect. 7 1
693 241.67 wind 9.0 10 < th dose independent rect. 8 23
707 241.70 humidity 90.0 10 > th dose independent rect. 6 2
764 241.79 wind 3.0 270 < th dose dependent rect. 5 1
775 241.83 radiation 10.0 43200 < th dose dependent rect. 19 7
801 241.89 wind 7.0 30 < th dose independent rect. 7 1
802 241.89 radiation 40.0 30 < th dose independent rect. 7 1
813 241.90 humidity 90.0 90 > th dose dependent rect. 6 1
827 241.94 wind 1.0 10 > th dose independent rect. 7 1
828 241.94 temperature 20.0 10 > th dose independent rect. 7 1
829 241.94 precipitation 0.1 30 < th dose independent rect. 7 1
832 241.94 precipitation 0.1 30 < th dose dependent rect. 7 1
836 241.95 wind 9.0 1440 < th dose independent rect. 8 1
839 241.95 temperature 10.0 30 > th dose independent rect. 7 1
841 241.95 temperature 10.0 1440 > th dose independent rect. 8 1
847 241.95 humidity 50.0 30 > th dose independent rect. 7 1
849 241.95 humidity 50.0 1440 > th dose independent rect. 8 1
851 241.95 atmosphere 995.0 30 > th dose independent rect. 7 1
852 241.95 atmosphere 995.0 1440 > th dose independent rect. 8 1
855 241.95 atmosphere 1015.0 30 < th dose independent rect. 7 1
856 241.95 atmosphere 1015.0 1440 < th dose independent rect. 8 1
858 241.95 temperature 10.0 30 > th dose independent rect. 8 23
859 241.95 temperature 10.0 1440 > th dose independent rect. 9 23
868 241.96 atmosphere 1000.0 90 < th dose independent rect. 6 23
906 242.03 humidity 90.0 10 < th dose independent rect. 8 10
913 242.04 humidity 90.0 10 > th dose independent rect. 6 12
922 242.05 precipitation 0.1 30 < th dose independent rect. 8 23
927 242.05 precipitation 0.1 30 < th dose dependent rect. 8 23
962 242.13 humidity 90.0 90 < th dose independent rect. 21 1
963 242.13 humidity 90.0 270 < th dose independent rect. 8 7
966 242.13 temperature 30.0 14400 > th dose dependent rect. 8 1