BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0219500 Os01g0219500|AK109524
(127 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0219500 Plant lipid transfer protein/Par allergen fami... 190 2e-49
AK059819 67 3e-12
Os12g0115000 Similar to Lipid transfer protein LPT II 67 3e-12
Os11g0427800 Similar to Lipid transfer protein LPT III 66 8e-12
Os11g0115400 Lipid transfer protein LPT IV 65 8e-12
Os12g0115100 Nonspecific lipid-transfer protein 1 precursor... 65 1e-11
AK059808 65 1e-11
Os06g0539500 65 1e-11
AK061740 64 3e-11
Os11g0116000 Similar to Nonspecific lipid-transfer protein ... 62 8e-11
AK070192 62 8e-11
Os12g0115300 Plant lipid transfer protein/Par allergen fami... 62 9e-11
>Os01g0219500 Plant lipid transfer protein/Par allergen family protein
Length = 127
Score = 190 bits (483), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 99/127 (77%), Positives = 99/127 (77%)
Query: 1 MHRSMASXXXXXXXXXXXXXXXXXXXXXXXXXXXXMQLMAPCMPYLAGAPGMTPYGICCD 60
MHRSMAS MQLMAPCMPYLAGAPGMTPYGICCD
Sbjct: 1 MHRSMASQAVAPLLLILMLAAAAGGASAAVQCGQVMQLMAPCMPYLAGAPGMTPYGICCD 60
Query: 61 SLGVLNRMAPAPADRVAVCNCVKDAAAGFPAVDFSRASALPAACGLSISFTIAPNMDCNQ 120
SLGVLNRMAPAPADRVAVCNCVKDAAAGFPAVDFSRASALPAACGLSISFTIAPNMDCNQ
Sbjct: 61 SLGVLNRMAPAPADRVAVCNCVKDAAAGFPAVDFSRASALPAACGLSISFTIAPNMDCNQ 120
Query: 121 VTEELRI 127
VTEELRI
Sbjct: 121 VTEELRI 127
>AK059819
Length = 117
Score = 67.4 bits (163), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 39 MAPCMPYLAGAPGMTPYGICCDSLGVLNRMAPAPADRVAVCNCVKDAAAGFPAVDFSRAS 98
++PC+ Y G G P CC + LN A ADR CNC+K+ A ++ A+
Sbjct: 36 VSPCLSYARGGSG--PSAACCSGVRSLNSAATTTADRRTACNCLKNVAGSISGLNAGNAA 93
Query: 99 ALPAACGLSISFTIAPNMDCNQV 121
++P+ CG+SI +TI+P++DC+ V
Sbjct: 94 SIPSKCGVSIPYTISPSIDCSSV 116
>Os12g0115000 Similar to Lipid transfer protein LPT II
Length = 110
Score = 67.0 bits (162), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 39 MAPCMPYLAGAPGMTPYGICCDSLGVLNRMAPAPADRVAVCNCVKDAAAGFPAVDFSRAS 98
++PC+ Y G G P CC + LN A ADR CNC+K+ A ++ A+
Sbjct: 29 VSPCLSYARGGSG--PSAACCSGVRSLNSAATTTADRRTACNCLKNVAGSISGLNAGNAA 86
Query: 99 ALPAACGLSISFTIAPNMDCNQV 121
++P+ CG+SI +TI+P++DC+ V
Sbjct: 87 SIPSKCGVSIPYTISPSIDCSSV 109
>Os11g0427800 Similar to Lipid transfer protein LPT III
Length = 117
Score = 65.9 bits (159), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 39 MAPCMPYLAGAPGMTPYGICCDSLGVLNRMAPAPADRVAVCNCVKDAAAGFPAVDFSRAS 98
+ PC+ Y G G P CC+ + L A ADR CNC+K+AA G ++ A+
Sbjct: 35 VGPCLTYARGG-GAGPSAACCNGVRSLKSAARTTADRRTACNCLKNAARGIKGLNAGNAA 93
Query: 99 ALPAACGLSISFTIAPNMDCNQV 121
++P+ CG+S+ +TI+ ++DC++V
Sbjct: 94 SIPSKCGVSVPYTISASIDCSRV 116
>Os11g0115400 Lipid transfer protein LPT IV
Length = 116
Score = 65.5 bits (158), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 39 MAPCMPYLAGAPGMTPYGICCDSLGVLNRMAPAPADRVAVCNCVKDAAAGFPAVDFSRAS 98
+ PC+ Y G G P CC + L A + ADR CNC+K+AA G ++ A+
Sbjct: 35 VGPCLTYARGGAG--PSAACCSGVRSLKAAASSTADRRTACNCLKNAARGIKGLNAGNAA 92
Query: 99 ALPAACGLSISFTIAPNMDCNQVT 122
++P+ CG+S+ +TI+ ++DC++V+
Sbjct: 93 SIPSKCGVSVPYTISASIDCSRVS 116
>Os12g0115100 Nonspecific lipid-transfer protein 1 precursor (LTP 1) (PAPI)
Length = 116
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Query: 39 MAPCMPYLAGAPGMTPYGICCDSLGVLNRMAPAPADRVAVCNCVKDAAAGFPAVDFSRAS 98
+ PC+ Y G G P CC + L A ADR CNC+K+AA G ++ A+
Sbjct: 35 VGPCLTYARGGAG--PSAACCSGVRSLKAAASTTADRRTACNCLKNAARGIKGLNAGNAA 92
Query: 99 ALPAACGLSISFTIAPNMDCNQVT 122
++P+ CG+S+ +TI+ ++DC++V+
Sbjct: 93 SIPSKCGVSVPYTISASIDCSRVS 116
>AK059808
Length = 116
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Query: 39 MAPCMPYLAGAPGMTPYGICCDSLGVLNRMAPAPADRVAVCNCVKDAAAGFPAVDFSRAS 98
+ PC+ Y G G P CC + L A ADR CNC+K+AA G ++ A+
Sbjct: 35 VGPCLTYARGGAG--PSAACCSGVRSLKAAASTTADRRTACNCLKNAARGIKGLNAGNAA 92
Query: 99 ALPAACGLSISFTIAPNMDCNQVT 122
++P+ CG+S+ +TI+ ++DC++V+
Sbjct: 93 SIPSKCGVSVPYTISASIDCSRVS 116
>Os06g0539500
Length = 136
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 39 MAPCMPYLAGAPGMTPYGICCDSLGVLNRMAPAPADRVAVCNCVKDAAAG-FPAVDFSRA 97
+ PC+ +L G P G CCD L L A DR A C C+K A +G F AV+ + A
Sbjct: 55 VTPCLGFLQGDDDH-PSGECCDGLSGLVAAAATTEDRQAACECLKSAVSGQFTAVEAAPA 113
Query: 98 SALPAACGLSISFTIAPNMDCNQ 120
LPA CGLS+ +T +P++DC+Q
Sbjct: 114 RDLPADCGLSLPYTFSPDVDCSQ 136
>AK061740
Length = 118
Score = 63.9 bits (154), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 39 MAPCMPYLAGAPGMTPYGICCDSLGVLNRMAPAPADRVAVCNCVKDAAAGFPAVDFSRAS 98
+APC+ Y+ G G+T CC+ + LN A ADR A C C+K A +++ +
Sbjct: 37 IAPCISYVTGRSGLTQG--CCNGVKGLNNAARTTADRQAACRCLKSLAGSIKSLNLGTVA 94
Query: 99 ALPAACGLSISFTIAPNMDCNQVT 122
+P CG+++ F I+ + DCN+V+
Sbjct: 95 GVPGKCGVNVGFPISLSTDCNKVS 118
>Os11g0116000 Similar to Nonspecific lipid-transfer protein 1 (LTP 1) (Major
allergen Pru d 3)
Length = 118
Score = 62.4 bits (150), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 39 MAPCMPYLAGAPGMTPYGICCDSLGVLNRMAPAPADRVAVCNCVKDAAAGFPAVDFSRAS 98
+APC+ Y+ G G+T CC+ + LN A ADR A C C+K A +++ A+
Sbjct: 37 IAPCISYVTGRGGLTQG--CCNGVKGLNNAARTTADRQAACRCLKTLAGTIKSLNLGAAA 94
Query: 99 ALPAACGLSISFTIAPNMDCNQVT 122
+P CG+++ F I+ + DC++V+
Sbjct: 95 GIPGKCGVNVGFPISLSTDCSKVS 118
>AK070192
Length = 118
Score = 62.4 bits (150), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 39 MAPCMPYLAGAPGMTPYGICCDSLGVLNRMAPAPADRVAVCNCVKDAAAGFPAVDFSRAS 98
+APC+ Y+ G G+T CC+ + LN A ADR A C C+K A +++ A+
Sbjct: 37 IAPCISYVTGRGGLTQG--CCNGVKGLNNAARTTADRQAACRCLKTLAGTIKSLNLGAAA 94
Query: 99 ALPAACGLSISFTIAPNMDCNQVT 122
+P CG+++ F I+ + DC++V+
Sbjct: 95 GIPGKCGVNVGFPISLSTDCSKVS 118
>Os12g0115300 Plant lipid transfer protein/Par allergen family protein
Length = 118
Score = 62.0 bits (149), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 39 MAPCMPYLAGAPGMTPYGICCDSLGVLNRMAPAPADRVAVCNCVKDAAAGFPAVDFSRAS 98
+APC+ Y+ G G+T CC+ + LN A ADR A C C+K A +++ A+
Sbjct: 37 IAPCISYVTGRGGLTQG--CCNGVKGLNNAARTTADRQAACRCLKTLAGTIKSLNLGAAA 94
Query: 99 ALPAACGLSISFTIAPNMDCNQVT 122
+P CG+++ F I+ + DC++V+
Sbjct: 95 GIPGKCGVNVGFPISLSTDCSKVS 118
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.325 0.134 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,404,039
Number of extensions: 126366
Number of successful extensions: 422
Number of sequences better than 1.0e-10: 18
Number of HSP's gapped: 418
Number of HSP's successfully gapped: 18
Length of query: 127
Length of database: 17,035,801
Length adjustment: 89
Effective length of query: 38
Effective length of database: 12,388,755
Effective search space: 470772690
Effective search space used: 470772690
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 150 (62.4 bits)