BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0427800 Os11g0427800|AK061288
(117 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G38540.1 | chr2:16130418-16130893 FORWARD LENGTH=119 76 3e-15
AT3G51590.1 | chr3:19135828-19136654 REVERSE LENGTH=120 76 3e-15
AT4G33355.1 | chr4:16067097-16067568 FORWARD LENGTH=120 73 3e-14
AT5G59320.1 | chr5:23929051-23929492 FORWARD LENGTH=116 73 3e-14
AT2G15050.1 | chr2:6518888-6519259 FORWARD LENGTH=124 71 1e-13
AT5G59310.1 | chr5:23925296-23925772 REVERSE LENGTH=113 69 5e-13
AT2G38530.1 | chr2:16128481-16128948 FORWARD LENGTH=119 65 5e-12
AT3G08770.2 | chr3:2664330-2664784 REVERSE LENGTH=118 64 2e-11
AT3G51600.1 | chr3:19138661-19139124 REVERSE LENGTH=119 61 1e-10
AT5G01870.1 | chr5:337234-337678 FORWARD LENGTH=117 57 1e-09
AT2G18370.1 | chr2:7980687-7981475 FORWARD LENGTH=117 55 7e-09
>AT2G38540.1 | chr2:16130418-16130893 FORWARD LENGTH=119
Length = 118
Score = 76.3 bits (186), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/93 (46%), Positives = 56/93 (60%), Gaps = 2/93 (2%)
Query: 26 ITCGQVNSAVGPCLTYARGGGAGPSAACCNGVRSLKSXXXXXXXXXXXCNCLKNAARGI- 84
++CG VNS + C+ Y GG P A CC+GV++L S CNC++ AAR +
Sbjct: 27 LSCGSVNSNLAACIGYVLQGGVIPPA-CCSGVKNLNSIAKTTPDRQQACNCIQGAARALG 85
Query: 85 KGLNAGNAASIPSKCGVSVPYTISASIDCSRVR 117
GLNAG AA IP CGV++PY IS S +C VR
Sbjct: 86 SGLNAGRAAGIPKACGVNIPYKISTSTNCKTVR 118
>AT3G51590.1 | chr3:19135828-19136654 REVERSE LENGTH=120
Length = 119
Score = 76.3 bits (186), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 26 ITCGQVNSAVGPCLTYARGGGAGPSAACCNGVRSLKSXXXXXXXXXXXCNCLKNAARGIK 85
I CG V S + CLTY G PS CC GV+SL C CLK A + IK
Sbjct: 26 IQCGTVTSTLAQCLTYLTNSGPLPSQ-CCVGVKSLYQLAQTTPDRKQVCECLKLAGKEIK 84
Query: 86 GLNAGNAASIPSKCGVSVPYTISASIDCSRV 116
GLN A++P+ CGVS+PY IS S +C +
Sbjct: 85 GLNTDLVAALPTTCGVSIPYPISFSTNCDSI 115
>AT4G33355.1 | chr4:16067097-16067568 FORWARD LENGTH=120
Length = 119
Score = 73.2 bits (178), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 26 ITCGQVNSAVGPCLTYARGGGAGPSAACCNGVRSLKSXXXXXXXXXXXCNCLKNAARGIK 85
I C QVN + CL Y + GG PS CCNG+ SLK+ CNCLK+ A I
Sbjct: 29 IACPQVNMYLAQCLPYLKAGG-NPSPMCCNGLNSLKAAAPEKADRQVACNCLKSVANTIP 87
Query: 86 GLNAGNAASIPSKCGVSVPYTISASIDCSRV 116
G+N A +P+KCGV++ S ++DC+ +
Sbjct: 88 GINDDFAKQLPAKCGVNIGVPFSKTVDCNSI 118
>AT5G59320.1 | chr5:23929051-23929492 FORWARD LENGTH=116
Length = 115
Score = 72.8 bits (177), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Query: 26 ITCGQVNSAVGPCLTYARGGGAGPSAACCNGVRSLKSXXXXXXXXXXXCNCLKNAARGIK 85
I+CG V ++ PC TY GG P +CC GV++L S C C+++ A+ I
Sbjct: 25 ISCGTVAGSLAPCATYLSKGGLVP-PSCCAGVKTLNSMAKTTPDRQQACRCIQSTAKSIS 83
Query: 86 GLNAGNAASIPSKCGVSVPYTISASIDCSRVR 117
GLN A+ +P KCGVS+PY IS S +C+ ++
Sbjct: 84 GLNPSLASGLPGKCGVSIPYPISMSTNCNNIK 115
>AT2G15050.1 | chr2:6518888-6519259 FORWARD LENGTH=124
Length = 123
Score = 70.9 bits (172), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Query: 26 ITCGQVNSAVGPCLTYARGGG-AGPSAACCNGVRSLKSXXXXXXXXXXXCNCLKNAARGI 84
++CG+VNS + PC Y GG P CCNGVR L C C+KNAAR +
Sbjct: 27 LSCGEVNSNLKPCTGYLTNGGITSPGPQCCNGVRKLNGMVLTTLDRRQACRCIKNAARNV 86
Query: 85 -KGLNAGNAASIPSKCGVSVPYTISASID 112
GLNA AA IP +CG+ +PY+ +
Sbjct: 87 GPGLNADRAAGIPRRCGIKIPYSTQIRFN 115
>AT5G59310.1 | chr5:23925296-23925772 REVERSE LENGTH=113
Length = 112
Score = 68.9 bits (167), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 52/92 (56%), Gaps = 4/92 (4%)
Query: 26 ITCGQVNSAVGPCLTYARGGGAGPSAACCNGVRSLKSXXXXXXXXXXXCNCLKNAARGIK 85
ITCG V S++ PCL Y GG P CC GV+ L C CL++AA K
Sbjct: 25 ITCGTVASSLSPCLGYLSKGGVVPPP-CCAGVKKLNGMAQTTPDRQQACRCLQSAA---K 80
Query: 86 GLNAGNAASIPSKCGVSVPYTISASIDCSRVR 117
G+N A+ +P KCGVS+PY IS S +C+ ++
Sbjct: 81 GVNPSLASGLPGKCGVSIPYPISTSTNCATIK 112
>AT2G38530.1 | chr2:16128481-16128948 FORWARD LENGTH=119
Length = 118
Score = 65.5 bits (158), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 54/93 (58%), Gaps = 2/93 (2%)
Query: 26 ITCGQVNSAVGPCLTYARGGGAGPSAACCNGVRSLKSXXXXXXXXXXXCNCLKNAARGI- 84
++CG VN + C+ Y G A + CCNGV +LK+ C CL++AA+ +
Sbjct: 27 MSCGTVNGNLAGCIAYLTRG-APLTQGCCNGVTNLKNMASTTPDRQQACRCLQSAAKAVG 85
Query: 85 KGLNAGNAASIPSKCGVSVPYTISASIDCSRVR 117
GLN AA +PS C V++PY ISAS +C+ VR
Sbjct: 86 PGLNTARAAGLPSACKVNIPYKISASTNCNTVR 118
>AT3G08770.2 | chr3:2664330-2664784 REVERSE LENGTH=118
Length = 117
Score = 63.5 bits (153), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 26 ITCGQVNSAVGPCLTYARGGGAGPSAACCNGVRSLKSXXXXXXXXXXXCNCLKNAARGIK 85
++C V + + PCL+Y GG P+ CCNG+ +LKS C C+K+A G+
Sbjct: 21 VSCNTVIADLYPCLSYVTQGGPVPTL-CCNGLTTLKSQAQTSVDRQGVCRCIKSAIGGLT 79
Query: 86 --GLNAGNAASIPSKCGVSVPYTISASIDCS 114
NA +PSKCGV +PY S S DC
Sbjct: 80 LSPRTIQNALELPSKCGVDLPYKFSPSTDCD 110
>AT3G51600.1 | chr3:19138661-19139124 REVERSE LENGTH=119
Length = 118
Score = 61.2 bits (147), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 49/93 (52%), Gaps = 2/93 (2%)
Query: 26 ITCGQVNSAVGPCLTYARGGGAGPSAACCNGVRSLKSXXXXXXXXXXXCNCLKNAARGI- 84
I+CG V ++G C Y GG P CC+GV+ L S C C++ AAR +
Sbjct: 27 ISCGAVTGSLGQCYNYLTRGGFIPRG-CCSGVQRLNSLARTTRDRQQACRCIQGAARALG 85
Query: 85 KGLNAGNAASIPSKCGVSVPYTISASIDCSRVR 117
LNAG AA +P C V + Y ISA +C+ VR
Sbjct: 86 SRLNAGRAARLPGACRVRISYPISARTNCNTVR 118
>AT5G01870.1 | chr5:337234-337678 FORWARD LENGTH=117
Length = 116
Score = 57.4 bits (137), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 3/94 (3%)
Query: 26 ITCGQVNSAVGPCLTYARGGGAGPSAACCNGVRSLKSXXXXXXXXXXXCNCLKNAARGIK 85
I+C V + + PC+ Y GGA P + CCNG+R L C C+K+ +
Sbjct: 24 ISCNAVQANLYPCVVYVVQGGAIPYS-CCNGIRMLSKQATSASDKQGVCRCIKSVVGRVS 82
Query: 86 --GLNAGNAASIPSKCGVSVPYTISASIDCSRVR 117
+ AA++P KCGV +PY I S +C+ ++
Sbjct: 83 YSSIYLKKAAALPGKCGVKLPYKIDPSTNCNSIK 116
>AT2G18370.1 | chr2:7980687-7981475 FORWARD LENGTH=117
Length = 116
Score = 55.1 bits (131), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 26 ITCGQVNSAVGPCLTYARGGGAGPSAACCNGVRSLKSXXXXXXXXXXXCNCLKNAARGIK 85
I+C V + PC++Y G P CC+GV+SL + C C+K+ A +
Sbjct: 26 ISCSVVLQDLQPCVSYLTSGSGNPPETCCDGVKSLAAATTTSADKKAACQCIKSVANSVT 85
Query: 86 GLNAGNAASIPSKCGVSVPYTISASIDCSRV 116
+ A ++ S CG S+P S ++DC+ V
Sbjct: 86 -VKPELAQALASNCGASLPVDASPTVDCTTV 115
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.132 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,715,809
Number of extensions: 43746
Number of successful extensions: 158
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 143
Number of HSP's successfully gapped: 11
Length of query: 117
Length of database: 11,106,569
Length adjustment: 85
Effective length of query: 32
Effective length of database: 8,776,209
Effective search space: 280838688
Effective search space used: 280838688
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 105 (45.1 bits)