BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0202300 Os11g0202300|AK068673
(228 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0202300 Conserved hypothetical protein 373 e-104
Os11g0202000 Cyclin-like F-box domain containing protein 265 2e-71
Os11g0205900 Cyclin-like F-box domain containing protein 236 7e-63
Os11g0202200 Cyclin-like F-box domain containing protein 216 2e-56
Os11g0201900 190 6e-49
AK062276 184 4e-47
Os11g0201800 Cyclin-like F-box domain containing protein 184 5e-47
Os11g0209200 Similar to Ribosomal RNA apurinic site specifi... 137 8e-33
Os11g0209100 Cyclin-like F-box domain containing protein 135 3e-32
Os11g0201332 Cyclin-like F-box domain containing protein 129 1e-30
Os11g0208300 125 2e-29
Os11g0231600 Cyclin-like F-box domain containing protein 123 1e-28
Os11g0208000 Cyclin-like F-box domain containing protein 122 3e-28
Os11g0208400 Cyclin-like F-box domain containing protein 120 6e-28
Os11g0201299 Conserved hypothetical protein 118 4e-27
AK069621 118 4e-27
Os11g0262500 108 3e-24
Os06g0556300 Cyclin-like F-box domain containing protein 106 1e-23
Os11g0208100 Cyclin-like F-box domain containing protein 96 3e-20
Os11g0200600 Cyclin-like F-box domain containing protein 95 4e-20
Os06g0493300 89 2e-18
Os11g0200300 Cyclin-like F-box domain containing protein 75 5e-14
Os11g0201600 Cyclin-like F-box domain containing protein 74 1e-13
>Os11g0202300 Conserved hypothetical protein
Length = 228
Score = 373 bits (957), Expect = e-104, Method: Compositional matrix adjust.
Identities = 181/181 (100%), Positives = 181/181 (100%)
Query: 1 MPSLVDAFVGVLNWTKDYCIWSDSGDCGHENCESCYGIKDNNCVLLEGLSEAKTLGLISE 60
MPSLVDAFVGVLNWTKDYCIWSDSGDCGHENCESCYGIKDNNCVLLEGLSEAKTLGLISE
Sbjct: 1 MPSLVDAFVGVLNWTKDYCIWSDSGDCGHENCESCYGIKDNNCVLLEGLSEAKTLGLISE 60
Query: 61 RGSFILKRDLKWRPTFTKLKTLLLNEYWCVPDDFSALTCILQHAPVLENLILQICSKGPK 120
RGSFILKRDLKWRPTFTKLKTLLLNEYWCVPDDFSALTCILQHAPVLENLILQICSKGPK
Sbjct: 61 RGSFILKRDLKWRPTFTKLKTLLLNEYWCVPDDFSALTCILQHAPVLENLILQICSKGPK 120
Query: 121 HRMKIKGNCHSMDSSLVISAHLEIVEIKCETVDKRVLKVLKYLSTFNILFSFKEIEILEG 180
HRMKIKGNCHSMDSSLVISAHLEIVEIKCETVDKRVLKVLKYLSTFNILFSFKEIEILEG
Sbjct: 121 HRMKIKGNCHSMDSSLVISAHLEIVEIKCETVDKRVLKVLKYLSTFNILFSFKEIEILEG 180
Query: 181 Y 181
Y
Sbjct: 181 Y 181
>Os11g0202000 Cyclin-like F-box domain containing protein
Length = 453
Score = 265 bits (678), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 133/180 (73%), Positives = 153/180 (85%), Gaps = 3/180 (1%)
Query: 1 MPSLVDAFVGVLNWTKDYCIWS--DSGDCGHENCESCYGIKD-NNCVLLEGLSEAKTLGL 57
MPSLV+AFV V++ T D C + +SGDCG+E+C+SC+GIKD NNCVLL+GLSEAKTL L
Sbjct: 236 MPSLVEAFVRVVHRTYDCCGYDYINSGDCGNEHCKSCHGIKDDNNCVLLDGLSEAKTLAL 295
Query: 58 ISERGSFILKRDLKWRPTFTKLKTLLLNEYWCVPDDFSALTCILQHAPVLENLILQICSK 117
I SFI RDLKW PTF+KLKTLLLNEYWCVPD+FSAL CIL+HAPVLENLILQ+ S+
Sbjct: 296 IDGTISFIFNRDLKWCPTFSKLKTLLLNEYWCVPDEFSALACILEHAPVLENLILQLYSE 355
Query: 118 GPKHRMKIKGNCHSMDSSLVISAHLEIVEIKCETVDKRVLKVLKYLSTFNILFSFKEIEI 177
GPKH MKIKGNCH MD S IS HLE VEI+CE VDKRVLKVLKYLSTFNILFSF++++I
Sbjct: 356 GPKHTMKIKGNCHPMDRSAAISGHLETVEIRCEVVDKRVLKVLKYLSTFNILFSFEQVKI 415
>Os11g0205900 Cyclin-like F-box domain containing protein
Length = 485
Score = 236 bits (603), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 120/170 (70%), Positives = 137/170 (80%), Gaps = 7/170 (4%)
Query: 1 MPSLVDAFVGVLNWTKDYCIWSDSGDCGHENCESCYGIKDNNCVLLEGLSEAKTLGLISE 60
MPSLVDAFV + +TKD+C S+SGDC HE CESCYGIKDN CVLLEGLS AKTL LI++
Sbjct: 233 MPSLVDAFVRIFFYTKDFCSESNSGDCSHEGCESCYGIKDNKCVLLEGLSNAKTLVLINK 292
Query: 61 RGSFILKRDLKWRPTFTKLKTLLLNEYWCVPDDFSALTCILQHAPVLENLILQICSKGPK 120
+ SFI +RDLKW PTFTKLKTLLLNEY AL CIL+H+PVLENLILQI S+GP+
Sbjct: 293 QKSFIFRRDLKWCPTFTKLKTLLLNEY-------CALACILEHSPVLENLILQIYSEGPE 345
Query: 121 HRMKIKGNCHSMDSSLVISAHLEIVEIKCETVDKRVLKVLKYLSTFNILF 170
H MKI GNC S+D S ISAHLEIVEI+CE +D V +VLKYLSTFNIL+
Sbjct: 346 HIMKINGNCSSVDRSAAISAHLEIVEIRCEMIDNFVDEVLKYLSTFNILY 395
>Os11g0202200 Cyclin-like F-box domain containing protein
Length = 412
Score = 216 bits (549), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 108/177 (61%), Positives = 130/177 (73%)
Query: 1 MPSLVDAFVGVLNWTKDYCIWSDSGDCGHENCESCYGIKDNNCVLLEGLSEAKTLGLISE 60
MPSLVDAFV V + ++D+C SDSGDCG + CESCYG + NCVLLEGLSEAK L LI+E
Sbjct: 234 MPSLVDAFVSVPSSSEDFCGESDSGDCGRDGCESCYGFTNKNCVLLEGLSEAKMLVLINE 293
Query: 61 RGSFILKRDLKWRPTFTKLKTLLLNEYWCVPDDFSALTCILQHAPVLENLILQICSKGPK 120
SFI KRDLKW PTF+KLKTL+LN YWCVPDD L IL+H+P LE L+ Q+ + K
Sbjct: 294 DESFIFKRDLKWCPTFSKLKTLILNGYWCVPDDSHMLARILEHSPALEKLVFQLGYQAYK 353
Query: 121 HRMKIKGNCHSMDSSLVISAHLEIVEIKCETVDKRVLKVLKYLSTFNILFSFKEIEI 177
KIKG + M+ S IS HL+IVE++C +D +VLKVLKYLSTF I FS +E I
Sbjct: 354 RTNKIKGILNPMERSAGISEHLQIVEVQCNAIDGQVLKVLKYLSTFKIYFSLEEATI 410
>Os11g0201900
Length = 420
Score = 190 bits (483), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 99/173 (57%), Positives = 123/173 (71%), Gaps = 1/173 (0%)
Query: 1 MPSLVDAFVGVLNWTKDYCIWSDSGDCGHENCESCYGIKDN-NCVLLEGLSEAKTLGLIS 59
MPSL +A V V D C +DSG CG E+C+ CY I DN NCVLL GLSEAK L L +
Sbjct: 247 MPSLAEATVRVTAGCSDVCGNADSGYCGFEDCKYCYPIDDNRNCVLLNGLSEAKNLALTA 306
Query: 60 ERGSFILKRDLKWRPTFTKLKTLLLNEYWCVPDDFSALTCILQHAPVLENLILQICSKGP 119
E +FI KRDL+W PTF+KLKTLLLN++WCV DF AL+CIL+H+PVLE L L + SKGP
Sbjct: 307 ECKTFIFKRDLQWCPTFSKLKTLLLNDHWCVAPDFHALSCILKHSPVLEKLTLHLFSKGP 366
Query: 120 KHRMKIKGNCHSMDSSLVISAHLEIVEIKCETVDKRVLKVLKYLSTFNILFSF 172
+H++++ G+ MD IS L IVE+KC+ VD+ V KVLK+L NI FSF
Sbjct: 367 EHKVELNGSFGLMDRPTGISERLNIVEVKCKVVDENVSKVLKFLCACNIRFSF 419
>AK062276
Length = 412
Score = 184 bits (468), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 93/169 (55%), Positives = 118/169 (69%), Gaps = 1/169 (0%)
Query: 1 MPSLVDAFVGVLNWTKDYCIWSD-SGDCGHENCESCYGIKDNNCVLLEGLSEAKTLGLIS 59
+PSLV A + + + +D+ + D SG C HE C C G++ NCVLL GLSEAK L L++
Sbjct: 227 LPSLVKADIKLNSQCRDFSSFDDFSGGCNHEFCGGCRGVQAENCVLLRGLSEAKNLALVA 286
Query: 60 ERGSFILKRDLKWRPTFTKLKTLLLNEYWCVPDDFSALTCILQHAPVLENLILQICSKGP 119
E F+ +RDLKW P F LKTLLLNE WCV D SAL CILQH+PVLE L LQ+ S GP
Sbjct: 287 ETKMFVFRRDLKWCPIFRNLKTLLLNECWCVLSDLSALACILQHSPVLEKLTLQLFSMGP 346
Query: 120 KHRMKIKGNCHSMDSSLVISAHLEIVEIKCETVDKRVLKVLKYLSTFNI 168
KH++K+KG+ H S + +LEIVE+KCE VD+ VL VLK+LS+ NI
Sbjct: 347 KHKVKMKGSRHPSGVSAAMLKYLEIVEVKCEVVDESVLDVLKFLSSLNI 395
>Os11g0201800 Cyclin-like F-box domain containing protein
Length = 442
Score = 184 bits (467), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 93/173 (53%), Positives = 123/173 (71%), Gaps = 1/173 (0%)
Query: 1 MPSLVDAFVGVLNWTKDYCIWSDSGDCGHENCESCYGIKDN-NCVLLEGLSEAKTLGLIS 59
MPSLV+A + V + D+C + SG CG E+C CY I D+ +CVLL+GLSEAK L L++
Sbjct: 270 MPSLVEATITVNSGCSDFCRNAGSGYCGFEDCNYCYPINDDRSCVLLKGLSEAKNLALVA 329
Query: 60 ERGSFILKRDLKWRPTFTKLKTLLLNEYWCVPDDFSALTCILQHAPVLENLILQICSKGP 119
+FI RDLKW PTF+KLKTLLLN++WCV +F AL+CIL+H+PVLE L L + S GP
Sbjct: 330 HCRTFIFNRDLKWYPTFSKLKTLLLNDHWCVAPEFHALSCILKHSPVLEKLTLHLFSWGP 389
Query: 120 KHRMKIKGNCHSMDSSLVISAHLEIVEIKCETVDKRVLKVLKYLSTFNILFSF 172
H++++ G+ MD I HL IVE+KCE V++ V KVLK+L FN+ FSF
Sbjct: 390 GHKVEMNGSFGMMDRPAEIPEHLNIVEVKCEEVNENVSKVLKFLCAFNLRFSF 442
>Os11g0209200 Similar to Ribosomal RNA apurinic site specific lyase
Length = 474
Score = 137 bits (344), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 80/173 (46%), Positives = 111/173 (64%), Gaps = 7/173 (4%)
Query: 1 MPSLVDAFVGVLNWTKDYCIWSDSGDCGHENCESCYGIKD-----NNCVLLEGLSEAKTL 55
MPSLV+A V D+C + +G+C E+C+ C+G+ D +NCVLL GLSEAK+L
Sbjct: 285 MPSLVEASVRPHQDCDDWCSNTYTGNCEDEDCDGCHGMIDKIGNSSNCVLLGGLSEAKSL 344
Query: 56 GLISERGSFILKRDLKWRPTFTKLKTLLLNEYWCVPDDFSALTCILQHAPVLENLILQIC 115
LI+ I DL+W P F+KLK LLLNE WC+ +F AL CIL+H+PVL L LQI
Sbjct: 345 KLIAGPEIIIFGSDLRWCPMFSKLKNLLLNE-WCLLSNFWALACILEHSPVLRKLTLQI- 402
Query: 116 SKGPKHRMKIKGNCHSMDSSLVISAHLEIVEIKCETVDKRVLKVLKYLSTFNI 168
SK K M+ + N + + IS HL++V++ C+ VD+ V K+ K+LST +I
Sbjct: 403 SKEAKSMMQTEENDNPLRKPAAISEHLKVVKVHCKEVDEVVYKIGKWLSTLDI 455
>Os11g0209100 Cyclin-like F-box domain containing protein
Length = 416
Score = 135 bits (339), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 78/179 (43%), Positives = 114/179 (63%), Gaps = 8/179 (4%)
Query: 1 MPSLVDAFVGVLNWTKD-YCIWSDSGD---CGHENCESCYGIKDNNCVLLEGLSEAKTLG 56
MP +VDAFV V + + D Y S + D C E+C+ C+ + NCV+++ LS+AK L
Sbjct: 240 MPLIVDAFVRVHDRSGDWYSCTSGNADFEECLCEDCDFCHS--NTNCVIMQALSQAKNLV 297
Query: 57 LISERGSFILKRDLKWRPTFTKLKTLLLNEYWCVPDDFSALTCILQHAPVLENLILQICS 116
L + FI K++L PTF+ LKTLLL +CV D +T IL+H PV+E LIL+
Sbjct: 298 LSAHEQEFIFKKELMRCPTFSNLKTLLLINCFCVAFDLHGITSILRHTPVIEKLILEFFF 357
Query: 117 KGPKH--RMKIKGNCHSMDSSLVISAHLEIVEIKCETVDKRVLKVLKYLSTFNILFSFK 173
+ +H +++KG+C M+ S IS HL++V +KC +D R+ K+LK+LSTFNI FSF+
Sbjct: 358 EVTEHDDEVEMKGSCSQMERSSAISKHLKLVIVKCNAIDGRITKILKFLSTFNICFSFE 416
>Os11g0201332 Cyclin-like F-box domain containing protein
Length = 425
Score = 129 bits (325), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 85/185 (45%), Positives = 118/185 (63%), Gaps = 11/185 (5%)
Query: 1 MPSLVDAFVGVLN-WTKDYCIWSDSGDCGHENCESCYGIKDNN--CVLLEGLSEAKTLGL 57
MP LV A V +L+ + KD C +D G C C CYGI D + CVLL+GL++A L L
Sbjct: 221 MPVLVAAKVLLLDFYCKDCCDGNDPGYCP-AGCTHCYGIDDGSAGCVLLKGLADATNLEL 279
Query: 58 ISERGSFILKRDLKWRPTFTKLKTLLLNEYWCVPDDFSALTCILQHAPVLENLILQICSK 117
I++ FILKRDL+W PTFT LKTLLL++ W D AL CILQH+PVLE L LQ+ SK
Sbjct: 280 IADPEVFILKRDLRWCPTFTNLKTLLLSQ-WFESSDHCALICILQHSPVLEKLTLQL-SK 337
Query: 118 GPKHRMKIKGNCHSMDSSLVISAHLEIVEIKCETVDKRVLKVLKYLSTFNI----LFSFK 173
++ + +SM+ S S +L+ VE+KC+ +D+RV K++K L+++ I + S K
Sbjct: 338 KSVINVRSRAIYNSMEKSFT-SENLKTVEVKCQDIDQRVHKLMKSLNSYGIPLERIISNK 396
Query: 174 EIEIL 178
+I L
Sbjct: 397 QINFL 401
>Os11g0208300
Length = 439
Score = 125 bits (315), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 80/184 (43%), Positives = 110/184 (59%), Gaps = 12/184 (6%)
Query: 1 MPSLVDAFVGVLNWTKDYCIWSDSGDCGHENCESCYGIKD-------NNCVLLEGLSEAK 53
MPSL+ A V +D C S SG C ++ + C+G D N + L+GLSEA
Sbjct: 239 MPSLLQAIVRFDEACEDKCQKSVSGGCDDDDDDYCFGCADEVVAGYGTNGMCLQGLSEAT 298
Query: 54 TLGLISERGSFILKRDLKWRPTFTKLKTLLLNEYWCVPDDFSALTCILQHAPVLENLILQ 113
L L ++ ++ +RDLKW PTF KLKTLLL+E WCV D SAL C LQH+P+LE L +Q
Sbjct: 299 HLELSADPAVYVFRRDLKWCPTFAKLKTLLLDE-WCVVGDLSALICFLQHSPILEKLTIQ 357
Query: 114 ICSKGPKHRMKIKGNCHSMDSSLVISAHLEIVEIKCETVDKRVLKVLKYLSTFNILFSFK 173
+ K P M +G ++ + V S HL+IVEI+C+ V+ V K+LK L+T+ I K
Sbjct: 358 L-QKAPTCLMDSEGQYNTSELPFV-SNHLKIVEIECKEVNTWVWKILKTLTTYGI--PLK 413
Query: 174 EIEI 177
+I I
Sbjct: 414 QINI 417
>Os11g0231600 Cyclin-like F-box domain containing protein
Length = 433
Score = 123 bits (309), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 74/170 (43%), Positives = 107/170 (62%), Gaps = 5/170 (2%)
Query: 1 MPSLVDAFVGVLNWTKDYCIWSDSGDCGHENCESC-YGIKDNN-CVLLEGLSEAKTLGLI 58
MP LV A V + + +D C ++ GDCG C+ C + D N CVLL+GLS A TL L
Sbjct: 237 MPLLVTASVNLDHECRDRCANTEFGDCGDPECDDCDVMVSDGNGCVLLQGLSGATTLELT 296
Query: 59 SERGSFILKRDLKWRPTFTKLKTLLLNEYWCVPDDFSALTCILQHAPVLENLILQICSKG 118
+E F+ +RDL W P F+KLKTLL+NE W + + S L C+L+H+P++E L LQ+ SK
Sbjct: 297 TESRVFMFRRDLMWCPIFSKLKTLLVNE-WFMTSNMSGLACLLEHSPIVEKLTLQL-SKE 354
Query: 119 PKHRMKIKGNCHSMDSSLVISAHLEIVEIKCETVDKRVLKVLKYLSTFNI 168
P++ ++I+ + + + +L IVEIKC+ D+RV K+LK LS I
Sbjct: 355 PRNFVEIEDSDKPCKQAFLFK-NLNIVEIKCQEGDERVKKILKILSQNGI 403
>Os11g0208000 Cyclin-like F-box domain containing protein
Length = 425
Score = 122 bits (305), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 72/171 (42%), Positives = 102/171 (59%), Gaps = 6/171 (3%)
Query: 1 MPSLVDAFVGVLNWTKDYCI---WSDSGDCGHENCESCYGIKDNNCVLLEGLSEAKTLGL 57
MPSL A V + ++ D C + D GD G + C Y + +CV LEGL+EA L L
Sbjct: 222 MPSLATAAVRLDHFCHDRCANGWYDDCGDAGCKGCHDYYRPDEYDCVFLEGLTEATDLTL 281
Query: 58 ISERGSFILKRDLKWRPTFTKLKTLLLNEYWCVPDDFSALTCILQHAPVLENLILQICSK 117
++ ++ RDLKW TF+KLKTL LN ++ P D SAL LQHAP+LE L L++ SK
Sbjct: 282 LAYSKVYLFNRDLKWCSTFSKLKTLFLNAWFVAP-DLSALAWFLQHAPLLERLFLRV-SK 339
Query: 118 GPKHRMKIKGNCHSMDSSLVISAHLEIVEIKCETVDKRVLKVLKYLSTFNI 168
PK+ + + G+ + ++ S HL+IVEI C VD +LK+LK L+ +
Sbjct: 340 VPKNLVGMDGSFNQLEQPFAAS-HLQIVEIYCREVDGIILKILKVLNANGV 389
>Os11g0208400 Cyclin-like F-box domain containing protein
Length = 425
Score = 120 bits (302), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 80/182 (43%), Positives = 112/182 (61%), Gaps = 8/182 (4%)
Query: 1 MPSLVDAFVGVLNWTKDYCIWSDSGDCGHENCESCYGIKDN------NCVLLEGLSEAKT 54
MPSL+ AFV + D C + SG+C E C CYG+ DN CVLL GLSEAK
Sbjct: 241 MPSLIAAFVRPHRDSDDLCSNTYSGNCEDEYCHGCYGMVDNAGNDSAKCVLLGGLSEAKK 300
Query: 55 LGLISERGSFILKRDLKWRPTFTKLKTLLLNEYWCVPDDFSALTCILQHAPVLENLILQI 114
L LI+ I + DL+W P F+KLK+LLLNE WCV ++F AL CIL+H+PVL L LQI
Sbjct: 301 LELIAGPEMRIFRSDLRWCPLFSKLKSLLLNE-WCVANNFWALACILEHSPVLLKLTLQI 359
Query: 115 CSKGPKHRMKIKGNCHSMDSSLVISAHLEIVEIKCETVDKRVLKVLKYLSTFNILFSFKE 174
SK K + N ++ IS HL++V++ C+ VD+ V + +K+LST +++ +
Sbjct: 360 -SKETKPMIGAVENYSALVKPAAISKHLKVVKVHCKEVDEGVCETVKFLSTLDVVVLIRR 418
Query: 175 IE 176
++
Sbjct: 419 MD 420
>Os11g0201299 Conserved hypothetical protein
Length = 190
Score = 118 bits (295), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 72/152 (47%), Positives = 98/152 (64%), Gaps = 6/152 (3%)
Query: 19 CIWSDSGDCGHENCESCYGIKDNN--CVLLEGLSEAKTLGLISERGSFILKRDLKWRPTF 76
C SD G C C CYGI D + CVLL+GL++A L LI++ FIL+RDL+W PTF
Sbjct: 1 CYSSDPGYCPI-GCTHCYGIDDGSAGCVLLKGLADASNLELIADPKVFILRRDLRWCPTF 59
Query: 77 TKLKTLLLNEYWCVPDDFSALTCILQHAPVLENLILQICSKGPKHRMKIKGNCHSMDSSL 136
TKLKTLLL + W + AL CILQH+P LE L LQ+ SK P M+ + +SM S
Sbjct: 60 TKLKTLLLIQ-WFESAENCALICILQHSPFLEKLTLQL-SKKPDINMRSRAIYNSMGKSF 117
Query: 137 VISAHLEIVEIKCETVDKRVLKVLKYLSTFNI 168
S +L+ VE+KC+ +DK+V K++ L+++ I
Sbjct: 118 A-SDNLKTVEVKCQDIDKKVHKLIMSLNSYGI 148
>AK069621
Length = 508
Score = 118 bits (295), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 74/171 (43%), Positives = 103/171 (60%), Gaps = 7/171 (4%)
Query: 1 MPSLVDAFVGVLNWTKDYCIWSD-SGDCGHENCESC--YGIKDNNCVLLEGLSEAKTLGL 57
MPSL+ A + + + D+C + G C C++C G +CVLL+GLSEAK+L L
Sbjct: 227 MPSLLTASIKLTD-CDDHCGKEEFGGSCDDNACDNCGANGGSSGDCVLLDGLSEAKSLEL 285
Query: 58 ISERGSFILKRDLKWRPTFTKLKTLLLNEYWCVPDDFSALTCILQHAPVLENLILQICSK 117
I++ FI + DL W PTF KLKTLLLNE W V D L C LQH PVLE L LQ+C +
Sbjct: 286 IAKPRVFIFRSDLMWCPTFGKLKTLLLNE-WSVAIDLVELICFLQHTPVLEKLTLQLC-E 343
Query: 118 GPKHRMKIKGNCHSMDSSLVISAHLEIVEIKCETVDKRVLKVLKYLSTFNI 168
GP + M+ +G+ ++ S L++VE+K E D RV K++ ST+ +
Sbjct: 344 GPVNWMENEGSYDPTENPFA-SKQLKVVEVKFEKFDLRVHKIIMIFSTYGV 393
>Os11g0262500
Length = 419
Score = 108 bits (270), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 72/170 (42%), Positives = 102/170 (60%), Gaps = 16/170 (9%)
Query: 1 MPSLVDAFVGVLNWTKDYCIWSDSGDCGHE-----NCESCYGIKDNNCVLLEGLSEAKTL 55
+PSL AFV + + +DYC+ S GDCG + C Y + D++CVLL GLS L
Sbjct: 227 LPSLSTAFVRLDDRCEDYCLHSYYGDCGDQVSCGKYCTRFYDVHDDDCVLLGGLSNVTNL 286
Query: 56 GLISERGSFILKRDLKWRPTFTKLKTLLLNEYWCVPD---DFSALTCILQHAPVLENLIL 112
LI+ FI+++DL RPTF+KLKTLLLN V D F L IL+ +PVLE L L
Sbjct: 287 ELITSPKVFIVRKDLLMRPTFSKLKTLLLN----VSDADAGFGPLVYILRSSPVLEKLTL 342
Query: 113 QICSKGPKHRMKIKGNCHSMDSSLVISAHLEIVEIKCETVDK--RVLKVL 160
Q+ + PK +++ G+C+ ++ LV S L++VEIK + RVL++L
Sbjct: 343 QLYEE-PKAKIETDGSCN-LEEQLVASKKLKVVEIKYSKIVVLCRVLQIL 390
>Os06g0556300 Cyclin-like F-box domain containing protein
Length = 423
Score = 106 bits (264), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 75/171 (43%), Positives = 96/171 (56%), Gaps = 8/171 (4%)
Query: 1 MPSLVDAFVGVLNWTKDYCIWSDSGDCGHENCESCY--GIKDNNCVLLEGLSEAKTLGLI 58
MPSL AF+ D C G+ G + C+ +K N VLL GLS+A L LI
Sbjct: 234 MPSLASAFIRFGEHCADSCDCYYYGEFGPDY-TGCHHSTVKGNGTVLLNGLSDAIQLELI 292
Query: 59 SERGSFILKRDLKWRPTFTKLKTLLLNEYWCVPDDFSALTCILQHAPVLENLILQICSKG 118
S G FI +RD + PTF KLKTLLLNE WC+ D SAL LQH+PVLE L LQ+ K
Sbjct: 293 SGAGVFIFRRDFRCCPTFNKLKTLLLNE-WCMAADSSALIYFLQHSPVLEKLTLQL-RKS 350
Query: 119 PKHRMKIKGNCHSMDSSLVISAHLEIVEIK-CETVDKRVLKVLKYLSTFNI 168
+ +K + + ++S HL++VEIK CE D+ V +VL LS I
Sbjct: 351 QRTMVKRGSTNKNQNEKFLVSKHLKLVEIKYCE--DEMVQQVLHVLSACGI 399
>Os11g0208100 Cyclin-like F-box domain containing protein
Length = 436
Score = 95.5 bits (236), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 72/173 (41%), Positives = 91/173 (52%), Gaps = 9/173 (5%)
Query: 1 MPSLVDAFVGVLNWTKDYCIWSDSGDCGHENCESCYGIKDNN-CVLLEGLSEAKTLGLIS 59
MPSLV A V + D C S GDCG ++C C D + CV L GL EA L L +
Sbjct: 239 MPSLVAAIVIFDDDYADRCDNSVLGDCGDDSCVDCCNYSDRSKCVCLNGLLEATHLELSA 298
Query: 60 ERGSFILKRDLKWR---PTFTKLKTLLLNEYWCVPDDFSALTCILQHAPVLENLILQICS 116
E ++ +RDL TF KLKTL L E WC+ D SAL LQ +P+LE L ++I
Sbjct: 299 EPAMYVFRRDLNLLLACHTFAKLKTLALGE-WCMTHDLSALIRFLQQSPILEKLTIKI-P 356
Query: 117 KGPKHRMKIKGNCHSMDSSLVISAHLEIVEIKCETVDKR-VLKVLKYLSTFNI 168
+ PK M + +S HL+IVEIKC+ + V K LK L TF I
Sbjct: 357 EEPKCSM--DAGQQKIPEEPFVSNHLKIVEIKCKGKEVMWVCKFLKTLGTFGI 407
>Os11g0200600 Cyclin-like F-box domain containing protein
Length = 460
Score = 94.7 bits (234), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 58/140 (41%), Positives = 84/140 (60%), Gaps = 5/140 (3%)
Query: 31 NCESCYGIKDNN--CVLLEGLSEAKTLGLISERGSFILKRDLKWRPTFTKLKTLLLNEYW 88
C C G D++ C L LS A L L +E G + K+DL W P F+K+KTLLL+ W
Sbjct: 311 TCADCDGDPDSSFKCEFLRDLSNAVNLELAAEDGMCMFKQDLTWCPRFSKVKTLLLDG-W 369
Query: 89 CVPDDFSALTCILQHAPVLENLILQICSKGPKHRMKIKGNCHSMDSSLVISAHLEIVEIK 148
V DF A+ C LQH P+LE L LQ+C +G + ++I+ + S+ +V HL+ VE++
Sbjct: 370 VVGHDFYAVVCFLQHTPILEKLTLQLC-EGHERMVEIEESSRSV-GRMVQFEHLQTVEVR 427
Query: 149 CETVDKRVLKVLKYLSTFNI 168
C D+ V K+LK L+T+ I
Sbjct: 428 CLRNDEWVHKILKILNTYGI 447
>Os06g0493300
Length = 429
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/177 (35%), Positives = 93/177 (52%), Gaps = 12/177 (6%)
Query: 1 MPSLVDAFVGVLNWTKDYCIWSDSGDCGHENCESCYGIKD--NNCVLLEGLSEAKTLGL- 57
MP L A V + D C +S DCG E+CE CY I D N V L LS + L
Sbjct: 232 MPYLAFAIVTFNDECYDTCQYSSFWDCGIEDCEGCYAIGDHLNGSVFLHHLSHTTHMELT 291
Query: 58 ------ISERGSFILKRDLKWRPTFTKLKTLLLNEYWCVPDDFSALTCILQHAPVLENLI 111
+++ S I RDLKW P F LKTLLLNE W + + + ILQH+P LE +
Sbjct: 292 NDCRMNMNDSISTIFDRDLKWCPLFRNLKTLLLNE-WFLENGLRGVLRILQHSPALEKIT 350
Query: 112 LQICSKGPKHRMKIKGNCHSMDSSLVISAHLEIVEIKCETVDKRVLKVLKYLSTFNI 168
L++ + PK ++ + + +M+ V++ HL+ + +KC+ V K++ L+ F I
Sbjct: 351 LKLYME-PKKIVENEESYGTMEQPFVMN-HLKKISVKCQKEVMWVKKIIMTLTQFGI 405
>Os11g0200300 Cyclin-like F-box domain containing protein
Length = 410
Score = 74.7 bits (182), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 65/171 (38%), Positives = 90/171 (52%), Gaps = 19/171 (11%)
Query: 1 MPSLVDAFV--GVLNWTKDYCIWSDSGDCGHENCESCYGIKDNNCVL----LEGLSEAKT 54
MP LV A V G L+W C + D G C C G D + + GLS A
Sbjct: 207 MPLLVTASVKFGTLSWGCRKCRY-DPG-----TCVCCDGDPDGDGSVKYKFFRGLSNAAN 260
Query: 55 LGLISERGSFILKRDLKWRPTFTKLKTLLLNEYWCVPDDFSALTCILQHAPVLENLILQI 114
L L++E G +DL W PTF+KLKTLLL+ W V +F AL C LQ +LE L LQ+
Sbjct: 261 LELVAEAG----MQDLTWCPTFSKLKTLLLDG-WVVGHNFCALGCFLQQTSILEKLTLQL 315
Query: 115 CSKGPKHRMKIKGNCHSMDSSLVISAHLEIVEIKCETVDKRVLKVLKYLST 165
KG + ++I+ + S+ LV +LE V+++C ++ V KV K L+
Sbjct: 316 -YKGHEDMVEIEESSSSI-GQLVQFQNLERVKVRCLRNEEWVHKVFKILNA 364
>Os11g0201600 Cyclin-like F-box domain containing protein
Length = 386
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 75/145 (51%), Gaps = 18/145 (12%)
Query: 32 CESCYGIKDNN-----CVLLEGLSEAKTLGLISERGSFILKRDLKWRPTFTKLKTLLLNE 86
C C +DN+ C+LL GLS L L +RDL+W PTF+ L+TL+L++
Sbjct: 170 CGLCANCRDNDNISGTCLLLRGLSRCTYLELSPSYQMLTFERDLRWCPTFSNLRTLVLSD 229
Query: 87 YWCVPDDFSALTCILQHAPVLENLILQICSKGPKHRMKIKGNCHSMDSSL---VISAHLE 143
Y + F AL C LQ PV++ L L++ KI G + S L V+ HL
Sbjct: 230 Y-NLDGGFHALLCFLQQTPVVQKLTLKL--------RKIHGPTVDISSYLKRPVVLRHLR 280
Query: 144 IVEIKCE-TVDKRVLKVLKYLSTFN 167
IVE+KC +V + + K+ K L T+
Sbjct: 281 IVEVKCPVSVQEEIFKLWKILITWG 305
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.139 0.439
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,096,392
Number of extensions: 235124
Number of successful extensions: 596
Number of sequences better than 1.0e-10: 24
Number of HSP's gapped: 560
Number of HSP's successfully gapped: 24
Length of query: 228
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 131
Effective length of database: 11,971,043
Effective search space: 1568206633
Effective search space used: 1568206633
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 154 (63.9 bits)