Os11g0202000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cyclin-like F-box domain containing protein.
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Os11g0202000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cyclin-like F-box domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33.69 | 0.273 | 8.62 | 0.817 | 1.1 | 0.507 | 0.222 | -0.0964 | 0.188 | 20.8 | 70 | 1256 | -- | -- |
| 33.71 | 0.27 | 8.62 | 0.805 | 1.1 | 0.502 | 0.226 | -- | 0.187 | 20.8 | 70 | 1255 | -- | -- |
| 33.85 | 0.271 | 8.62 | 0.816 | 1.09 | 0.507 | -- | -0.138 | 0.19 | 20.8 | 70.19 | 1255 | -- | -- |
| 33.89 | 0.271 | 8.62 | 0.799 | 1.09 | 0.497 | -- | -- | 0.182 | 20.8 | 70 | 1255 | -- | -- |
| 99.3 | 0.464 | 8.61 | 0.704 | -- | 0.409 | -- | 0.0266 | 0.12 | -- | 69 | 2899 | -- | -- |
| 42.85 | 0.307 | 8.64 | 0.689 | 1.06 | -- | 0.189 | -- | 0.113 | 20.5 | -- | -- | -- | -- |
| 42.96 | 0.307 | 8.64 | 0.683 | 1.06 | -- | -- | -- | 0.113 | 20.5 | -- | -- | -- | -- |
| 99.13 | 0.464 | 8.6 | 0.732 | -- | 0.457 | -- | -- | 0.163 | -- | 70.63 | 2905 | -- | -- |
| 49.93 | 0.329 | 8.64 | -- | 1.04 | 0.4 | -- | -- | 0.104 | 20.5 | 71.01 | 1344 | -- | -- |
| 105.26 | 0.479 | 8.61 | 0.678 | -- | -- | -- | -- | 0.103 | -- | -- | -- | -- | -- |
| 55.25 | 0.348 | 8.66 | -- | 1.05 | -- | -- | -- | 0.0373 | 20.5 | -- | -- | -- | -- |
| 111.4 | 0.492 | 8.62 | -- | -- | 0.39 | -- | -- | 0.0787 | -- | 71.43 | 1445 | -- | -- |
| 117.38 | 0.506 | 8.63 | -- | -- | -- | -- | -- | 0.0279 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 33.87 | humidity | 70 | 720 | > th | dose independent | rect. | 15 | 10 |
| 5 | 34.02 | humidity | 60 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 10 | 34.20 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 9 |
| 12 | 34.23 | humidity | 70 | 720 | > th | dose independent | rect. | 15 | 4 |
| 26 | 34.36 | humidity | 60 | 1440 | > th | dose dependent | rect. | 10 | 5 |
| 29 | 34.39 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 9 |
| 33 | 34.40 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 3 |
| 37 | 34.45 | humidity | 80 | 1440 | < th | dose independent | sin | 1 | NA |
| 60 | 34.55 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 20 |
| 63 | 34.56 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 11 |
| 72 | 34.57 | humidity | 70 | 720 | > th | dose independent | sin | 15 | NA |
| 73 | 34.57 | humidity | 80 | 1440 | > th | dose independent | sin | 1 | NA |
| 127 | 34.67 | humidity | 70 | 1440 | > th | dose independent | sin | 20 | NA |
| 137 | 34.67 | humidity | 60 | 1440 | > th | dose dependent | sin | 23 | NA |
| 176 | 34.74 | humidity | 70 | 720 | > th | dose independent | rect. | 15 | 18 |
| 211 | 34.78 | humidity | 70 | 1440 | > th | dose independent | rect. | 2 | 18 |
| 221 | 34.79 | humidity | 70 | 1440 | > th | dose independent | no | NA | NA |
| 261 | 34.79 | humidity | 70 | 1440 | > th | dose independent | rect. | 17 | 23 |
| 304 | 34.83 | humidity | 70 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 337 | 34.87 | humidity | 90 | 1440 | < th | dose dependent | sin | 0 | NA |
| 341 | 34.88 | humidity | 70 | 1440 | < th | dose independent | rect. | 10 | 10 |
| 372 | 34.89 | humidity | 90 | 1440 | < th | dose dependent | rect. | 10 | 7 |
| 405 | 34.91 | humidity | 90 | 1440 | < th | dose dependent | rect. | 3 | 14 |
| 406 | 34.91 | humidity | 90 | 1440 | < th | dose dependent | rect. | 3 | 16 |
| 422 | 34.92 | humidity | 70 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 539 | 34.99 | humidity | 50 | 720 | > th | dose dependent | rect. | 15 | 10 |
| 550 | 35.00 | humidity | 70 | 1440 | < th | dose independent | sin | 20 | NA |
| 613 | 35.04 | humidity | 60 | 720 | > th | dose dependent | rect. | 12 | 13 |
| 795 | 35.14 | humidity | 70 | 1440 | < th | dose independent | rect. | 18 | 23 |
| 803 | 35.15 | humidity | 70 | 1440 | < th | dose independent | no | NA | NA |
| 883 | 35.16 | radiation | 1 | 1440 | < th | dose independent | rect. | 18 | 23 |
| 895 | 35.17 | radiation | 1 | 1440 | > th | dose independent | rect. | 18 | 23 |
| 909 | 35.18 | humidity | 70 | 1440 | < th | dose independent | rect. | 15 | 23 |
| 966 | 35.21 | humidity | 80 | 1440 | < th | dose dependent | rect. | 18 | 21 |
| 989 | 35.23 | humidity | 50 | 720 | > th | dose dependent | rect. | 12 | 15 |