Os11g0209100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cyclin-like F-box domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os11g0209100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Cyclin-like F-box domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 165.36 | 0.604 | 6.7 | 0.976 | 3.06 | -1.3 | 0.339 | 0.356 | -0.0648 | 20.7 | 25.4 | 383 | -- | -- |
| 165.45 | 0.599 | 6.7 | 0.981 | 3.04 | -1.29 | 0.358 | -- | -0.0656 | 20.7 | 25.25 | 396 | -- | -- |
| 165.56 | 0.599 | 6.7 | 0.965 | 3.04 | -1.33 | -- | 0.531 | -0.0746 | 20.8 | 24.06 | 387 | -- | -- |
| 165.86 | 0.6 | 6.7 | 0.968 | 3.03 | -1.28 | -- | -- | -0.0643 | 20.7 | 25.26 | 396 | -- | -- |
| 234.41 | 0.713 | 6.68 | 0.259 | -- | -4.79 | -- | 2.18 | -0.481 | -- | 1.86 | 959 | -- | -- |
| 190.75 | 0.647 | 6.68 | 1.09 | 3.33 | -- | 0.385 | -- | 0.0535 | 20 | -- | -- | -- | -- |
| 191.18 | 0.648 | 6.68 | 1.08 | 3.33 | -- | -- | -- | 0.054 | 20 | -- | -- | -- | -- |
| 219.71 | 0.69 | 6.65 | 0.716 | -- | -4.96 | -- | -- | -0.249 | -- | 1.83 | 962 | -- | -- |
| 188.07 | 0.639 | 6.69 | -- | 2.95 | -1.32 | -- | -- | -0.165 | 20.8 | 21.19 | 399 | -- | -- |
| 797.17 | 1.32 | 6.59 | 1.04 | -- | -- | -- | -- | 0.0107 | -- | -- | -- | -- | -- |
| 221.65 | 0.696 | 6.7 | -- | 3.33 | -- | -- | -- | -0.0657 | 20 | -- | -- | -- | -- |
| 233.99 | 0.712 | 6.67 | -- | -- | -4.97 | -- | -- | -0.324 | -- | 1.87 | 964 | -- | -- |
| 825.76 | 1.34 | 6.62 | -- | -- | -- | -- | -- | -0.105 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 159.15 | temperature | 30 | 90 | < th | dose independent | rect. | 6 | 17 |
| 2 | 159.93 | radiation | 40 | 90 | < th | dose independent | rect. | 6 | 7 |
| 3 | 160.03 | radiation | 20 | 270 | < th | dose independent | rect. | 4 | 21 |
| 4 | 160.17 | radiation | 40 | 270 | < th | dose dependent | rect. | 4 | 22 |
| 5 | 160.34 | temperature | 30 | 90 | < th | dose independent | rect. | 6 | 21 |
| 8 | 160.56 | temperature | 30 | 270 | < th | dose independent | rect. | 5 | 15 |
| 15 | 161.13 | radiation | 40 | 270 | < th | dose independent | rect. | 4 | 22 |
| 18 | 161.23 | temperature | 30 | 90 | < th | dose independent | rect. | 6 | 11 |
| 21 | 161.36 | temperature | 30 | 270 | < th | dose dependent | sin | 22 | NA |
| 22 | 161.46 | temperature | 30 | 270 | < th | dose dependent | rect. | 6 | 15 |
| 31 | 161.88 | radiation | 40 | 270 | < th | dose independent | rect. | 4 | 9 |
| 54 | 162.64 | temperature | 10 | 270 | > th | dose dependent | rect. | 9 | 9 |
| 55 | 162.65 | humidity | 70 | 90 | > th | dose independent | rect. | 6 | 21 |
| 72 | 162.96 | radiation | 40 | 270 | < th | dose independent | rect. | 5 | 18 |
| 87 | 163.36 | temperature | 25 | 270 | > th | dose dependent | rect. | 9 | 7 |
| 91 | 163.44 | radiation | 40 | 270 | < th | dose independent | rect. | 6 | 16 |
| 94 | 163.48 | temperature | 30 | 90 | < th | dose independent | rect. | 6 | 7 |
| 129 | 164.08 | humidity | 60 | 270 | > th | dose dependent | rect. | 5 | 16 |
| 133 | 164.12 | temperature | 25 | 90 | > th | dose dependent | rect. | 11 | 11 |
| 144 | 164.24 | temperature | 25 | 90 | > th | dose dependent | rect. | 9 | 13 |
| 156 | 164.38 | temperature | 30 | 270 | < th | dose independent | rect. | 4 | 9 |
| 182 | 164.64 | temperature | 30 | 270 | < th | dose independent | sin | 2 | NA |
| 192 | 164.70 | temperature | 25 | 90 | > th | dose dependent | sin | 20 | NA |
| 198 | 164.73 | humidity | 70 | 270 | > th | dose independent | rect. | 5 | 17 |
| 202 | 164.78 | radiation | 40 | 270 | < th | dose dependent | rect. | 5 | 8 |
| 207 | 164.81 | temperature | 25 | 270 | > th | dose dependent | sin | 0 | NA |
| 215 | 164.87 | temperature | 25 | 90 | > th | dose dependent | rect. | 11 | 18 |
| 238 | 165.01 | temperature | 25 | 90 | > th | dose dependent | rect. | 9 | 20 |
| 259 | 165.14 | humidity | 70 | 270 | > th | dose independent | rect. | 4 | 21 |
| 262 | 165.20 | radiation | 40 | 270 | < th | dose dependent | rect. | 5 | 10 |
| 279 | 165.33 | humidity | 60 | 270 | > th | dose dependent | rect. | 5 | 12 |
| 280 | 165.37 | humidity | 60 | 270 | > th | dose dependent | rect. | 5 | 10 |
| 283 | 165.38 | humidity | 50 | 90 | > th | dose dependent | rect. | 6 | 21 |
| 293 | 165.45 | temperature | 25 | 10 | > th | dose dependent | rect. | 12 | 11 |
| 365 | 165.89 | humidity | 60 | 270 | > th | dose dependent | rect. | 4 | 21 |
| 366 | 165.90 | radiation | 20 | 270 | < th | dose independent | rect. | 5 | 8 |
| 368 | 165.91 | temperature | 25 | 10 | > th | dose dependent | rect. | 12 | 17 |
| 403 | 166.09 | radiation | 40 | 720 | < th | dose independent | rect. | 20 | 16 |
| 416 | 166.12 | radiation | 20 | 270 | < th | dose independent | rect. | 5 | 11 |
| 423 | 166.16 | temperature | 30 | 270 | < th | dose independent | rect. | 14 | 22 |
| 426 | 166.18 | temperature | 25 | 270 | > th | dose dependent | rect. | 18 | 22 |
| 431 | 166.20 | radiation | 40 | 270 | < th | dose dependent | sin | 21 | NA |
| 442 | 166.24 | temperature | 10 | 10 | > th | dose dependent | rect. | 12 | 18 |
| 458 | 166.29 | humidity | 60 | 270 | > th | dose dependent | sin | 23 | NA |
| 537 | 166.55 | radiation | 40 | 720 | < th | dose independent | rect. | 24 | 17 |
| 564 | 166.63 | radiation | 1 | 270 | > th | dose dependent | sin | 20 | NA |
| 579 | 166.68 | humidity | 50 | 90 | > th | dose dependent | rect. | 6 | 7 |
| 580 | 166.68 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 10 |
| 615 | 166.81 | wind | 7 | 90 | < th | dose independent | rect. | 12 | 18 |
| 665 | 166.94 | radiation | 40 | 10 | < th | dose independent | rect. | 6 | 21 |
| 682 | 167.00 | humidity | 70 | 90 | > th | dose independent | rect. | 6 | 7 |
| 703 | 167.06 | temperature | 10 | 270 | > th | dose dependent | rect. | 10 | 18 |
| 728 | 167.18 | humidity | 70 | 270 | > th | dose independent | rect. | 5 | 10 |
| 780 | 167.31 | radiation | 40 | 720 | < th | dose independent | sin | 10 | NA |
| 813 | 167.39 | radiation | 40 | 720 | < th | dose independent | rect. | 21 | 20 |
| 824 | 167.43 | wind | 7 | 10 | < th | dose independent | rect. | 13 | 17 |
| 832 | 167.45 | humidity | 90 | 270 | < th | dose dependent | rect. | 9 | 8 |
| 834 | 167.45 | temperature | 10 | 270 | > th | dose dependent | rect. | 9 | 20 |
| 886 | 167.60 | radiation | 20 | 270 | < th | dose independent | rect. | 14 | 22 |
| 907 | 167.66 | radiation | 20 | 270 | < th | dose independent | sin | 21 | NA |
| 918 | 167.68 | radiation | 40 | 720 | < th | dose independent | sin | 6 | NA |