Os11g0208400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cyclin-like F-box domain containing protein.
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Os11g0208400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cyclin-like F-box domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 169.51 | 0.612 | 5.52 | 1.26 | 3.12 | 1.81 | 1.42 | -0.798 | 0.281 | 19.8 | 25.79 | 104 | -- | -- |
| 169.68 | 0.607 | 5.51 | 1.34 | 3.11 | 1.74 | 1.39 | -- | 0.303 | 19.8 | 25.79 | 111 | -- | -- |
| 175.03 | 0.616 | 5.51 | 1.26 | 3.09 | 1.8 | -- | -0.401 | 0.297 | 19.8 | 25.84 | 119 | -- | -- |
| 175.08 | 0.616 | 5.5 | 1.3 | 3.09 | 1.75 | -- | -- | 0.306 | 19.8 | 25.8 | 122 | -- | -- |
| 476.68 | 1.02 | 5.61 | -0.202 | -- | 3.98 | -- | -6.06 | -0.293 | -- | 24.69 | 498 | -- | -- |
| 216.63 | 0.69 | 5.49 | 1.61 | 3.49 | -- | 1.69 | -- | 0.378 | 19.2 | -- | -- | -- | -- |
| 224.13 | 0.701 | 5.49 | 1.57 | 3.5 | -- | -- | -- | 0.382 | 19.1 | -- | -- | -- | -- |
| 477.41 | 1.02 | 5.49 | 0.845 | -- | 3.69 | -- | -- | -0.0127 | -- | 24.49 | 490 | -- | -- |
| 218.16 | 0.688 | 5.54 | -- | 3.01 | 2.07 | -- | -- | 0.139 | 19.9 | 25.62 | 121 | -- | -- |
| 870.98 | 1.38 | 5.41 | 1.51 | -- | -- | -- | -- | 0.32 | -- | -- | -- | -- | -- |
| 289.28 | 0.796 | 5.53 | -- | 3.48 | -- | -- | -- | 0.207 | 19.2 | -- | -- | -- | -- |
| 495.74 | 1.04 | 5.52 | -- | -- | 3.83 | -- | -- | -0.129 | -- | 24.4 | 498 | -- | -- |
| 930.81 | 1.42 | 5.45 | -- | -- | -- | -- | -- | 0.153 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 157.13 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 15 |
| 8 | 160.80 | temperature | 10 | 270 | > th | dose dependent | sin | 1 | NA |
| 18 | 162.74 | temperature | 10 | 90 | > th | dose dependent | sin | 22 | NA |
| 26 | 163.69 | temperature | 15 | 270 | > th | dose dependent | rect. | 8 | 10 |
| 29 | 164.01 | temperature | 30 | 270 | < th | dose dependent | sin | 0 | NA |
| 39 | 164.55 | temperature | 15 | 270 | > th | dose dependent | rect. | 1 | 15 |
| 87 | 166.80 | temperature | 25 | 90 | > th | dose dependent | rect. | 9 | 12 |
| 101 | 167.22 | temperature | 30 | 270 | < th | dose independent | rect. | 5 | 15 |
| 107 | 167.36 | temperature | 30 | 270 | < th | dose independent | rect. | 4 | 17 |
| 129 | 167.85 | temperature | 30 | 90 | < th | dose independent | rect. | 6 | 17 |
| 175 | 168.80 | temperature | 25 | 90 | > th | dose dependent | rect. | 9 | 20 |
| 206 | 169.16 | temperature | 25 | 90 | > th | dose dependent | rect. | 1 | 20 |
| 263 | 169.72 | temperature | 25 | 270 | > th | dose dependent | rect. | 18 | 22 |
| 438 | 171.23 | temperature | 10 | 270 | > th | dose dependent | rect. | 8 | 22 |
| 440 | 171.26 | temperature | 25 | 90 | > th | dose dependent | no | NA | NA |
| 488 | 171.46 | temperature | 10 | 270 | > th | dose dependent | rect. | 9 | 19 |
| 627 | 172.63 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 6 |
| 768 | 173.48 | temperature | 10 | 270 | > th | dose dependent | rect. | 10 | 17 |
| 826 | 173.91 | temperature | 30 | 270 | < th | dose independent | rect. | 14 | 22 |
| 860 | 174.20 | temperature | 10 | 720 | > th | dose dependent | rect. | 2 | 11 |
| 883 | 174.28 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 2 |