FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0201800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cyclin-like F-box domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.84 (0.0357) R2 : 0.136
β1 : -0.381 (0.138) R2dD : 0.0166 R2D : -0.0159
β2 : -- (--) R2dC : -- R2C : --
β3 : -0.796 (0.38) R2dE : 0.0216 R2E : -0.0975
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -21.4 (3.31) R2dD*E : 0.21 R2D*E : 0.0899
γ1 : 0.162 (0.0772) R2dN8 : 0.012 R2N8 : 0.0167
σ : 0.66
deviance : 198.86
__
_____
C
peak time of C : --
E
wheather : wind
threshold : 4.519
memory length : 30
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 22
open length of G : 0.993

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
196.41 0.658 2.84 -0.355 0.0518 -0.83 0.875 -21.9 0.162 20.3 4.519 30 22 0.993
215.02 0.688 2.87 -0.0238 0.0438 1.1 0.659 -- 0.158 19.8 4.519 30 22 0.993
198.74 0.662 2.84 -0.38 0.0497 -0.807 -- -21.4 0.164 18.4 4.519 30 22 0.993
216.25 0.689 2.87 -0.0401 0.0493 1.09 -- -- 0.161 18.4 8.547 5 22.9 0.169
198.86 0.66 2.84 -0.381 -- -0.796 -- -21.4 0.162 -- 4.519 30 22 0.993
223.8 0.701 2.86 -0.026 0.106 -- 0.542 -- 0.244 20.1 -- -- -- --
224.65 0.702 2.86 -0.0423 0.106 -- -- -- 0.244 20.9 -- -- -- --
216.37 0.688 2.87 -0.0414 -- 1.1 -- -- 0.159 -- 14 5 22.9 0.218
216.29 0.689 2.87 -- 0.0498 1.09 -- -- 0.165 18.4 13.53 5 22.9 0.186
225.3 0.701 2.85 -0.0423 -- -- -- -- 0.243 -- -- -- -- --
224.7 0.701 2.85 -- 0.106 -- -- -- 0.249 20.9 -- -- -- --
216.42 0.687 2.87 -- -- 1.1 -- -- 0.163 -- 14 5 22.9 0.218
225.34 0.701 2.85 -- -- -- -- -- 0.248 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 196.50 wind 5.0 30 < th dose independent rect. 22 1
2 196.52 wind 1.0 30 > th dose independent rect. 22 1
5 196.53 temperature 10.0 30 > th dose independent rect. 22 1
7 196.53 temperature 30.0 30 < th dose independent rect. 22 1
8 196.53 humidity 50.0 30 > th dose independent rect. 22 1
11 196.53 atmosphere 995.0 30 > th dose independent rect. 22 1
12 196.53 atmosphere 1010.0 30 < th dose independent rect. 22 1
14 196.53 radiation 1.0 30 < th dose independent rect. 22 1
19 196.53 temperature 10.0 30 > th dose independent rect. 23 23
20 196.53 wind 9.0 30 < th dose dependent rect. 22 1
21 196.53 radiation 1.0 30 < th dose dependent rect. 22 1
27 196.56 temperature 10.0 30 > th dose dependent rect. 22 1
28 196.58 atmosphere 995.0 30 > th dose dependent rect. 22 1
31 196.63 precipitation 0.1 30 < th dose independent rect. 22 1
33 196.63 precipitation 0.1 30 < th dose dependent rect. 22 1
34 196.65 humidity 50.0 30 > th dose dependent rect. 22 1
36 196.69 humidity 90.0 30 < th dose independent rect. 22 1
39 196.77 atmosphere 1015.0 30 < th dose dependent rect. 22 1
47 196.97 humidity 90.0 30 < th dose dependent rect. 22 1
48 197.08 wind 9.0 1440 < th dose independent rect. 23 1
49 197.08 temperature 10.0 1440 > th dose independent rect. 23 1
52 197.08 temperature 30.0 1440 < th dose independent rect. 23 1
56 197.08 humidity 50.0 1440 > th dose independent rect. 23 1
66 197.08 atmosphere 995.0 1440 > th dose independent rect. 23 1
67 197.08 radiation 1.0 1440 < th dose independent rect. 23 1
87 197.08 temperature 10.0 1440 > th dose independent rect. 24 23
90 197.08 radiation 1.0 1440 < th dose dependent rect. 23 1
100 197.36 wind 1.0 30 > th dose dependent rect. 22 1
102 197.41 temperature 30.0 30 < th dose dependent rect. 22 1
152 200.68 wind 9.0 30 < th dose independent rect. 23 23
163 204.76 atmosphere 995.0 30 > th dose independent rect. 23 23
168 205.98 temperature 10.0 1440 > th dose independent rect. 21 1
171 205.98 temperature 30.0 1440 < th dose independent rect. 21 1
175 205.98 humidity 50.0 1440 > th dose independent rect. 21 1
181 205.98 atmosphere 995.0 1440 > th dose independent rect. 21 1
182 205.98 radiation 1.0 1440 < th dose independent rect. 21 1
202 205.98 temperature 10.0 1440 > th dose independent rect. 22 23
205 206.00 precipitation 0.1 30 < th dose independent rect. 23 23
206 206.00 radiation 40.0 1440 < th dose dependent rect. 21 1
207 206.00 precipitation 0.1 30 < th dose dependent rect. 23 23
209 206.05 temperature 20.0 30 > th dose dependent rect. 20 1
211 206.09 temperature 25.0 30 > th dose independent rect. 20 1
212 206.13 atmosphere 1005.0 30 > th dose dependent rect. 20 1
213 206.17 wind 3.0 30 > th dose independent rect. 20 1
218 206.38 atmosphere 1005.0 30 > th dose independent rect. 20 1
222 206.56 humidity 80.0 30 > th dose independent rect. 20 1
224 206.61 wind 5.0 30 < th dose independent rect. 20 1
226 206.63 humidity 90.0 30 < th dose independent rect. 20 1
228 206.70 wind 1.0 30 > th dose dependent rect. 20 1
233 206.73 temperature 10.0 30 > th dose independent rect. 20 1
235 206.73 temperature 30.0 30 < th dose independent rect. 20 1
236 206.73 humidity 50.0 30 > th dose independent rect. 20 1
240 206.73 atmosphere 1010.0 30 < th dose independent rect. 20 1
242 206.73 radiation 1.0 30 < th dose independent rect. 20 1
247 206.73 precipitation 0.1 30 < th dose independent rect. 20 1
248 206.73 temperature 10.0 30 > th dose independent rect. 21 23
249 206.73 radiation 1.0 30 < th dose dependent rect. 20 1
254 206.73 precipitation 0.1 30 < th dose dependent rect. 20 1
255 206.83 humidity 50.0 30 > th dose dependent rect. 20 1
259 206.92 wind 9.0 30 < th dose dependent rect. 20 1
269 207.41 humidity 90.0 30 < th dose dependent rect. 20 1
274 207.84 atmosphere 1015.0 30 < th dose dependent rect. 20 1
292 209.06 temperature 30.0 30 < th dose dependent rect. 20 1
339 210.81 wind 9.0 30 < th dose independent rect. 21 23
350 211.23 wind 9.0 1440 < th dose independent rect. 21 1
355 212.10 humidity 50.0 30 > th dose independent rect. 23 23
357 212.69 atmosphere 1005.0 30 > th dose dependent rect. 20 3
358 212.75 precipitation 0.1 1440 < th dose independent rect. 23 1
359 212.75 precipitation 0.1 1440 < th dose dependent rect. 23 1
366 213.29 temperature 30.0 30 < th dose independent rect. 23 23
384 214.53 precipitation 0.1 270 > th dose dependent rect. 13 1
387 214.55 precipitation 0.1 270 > th dose independent rect. 13 1
392 214.67 precipitation 0.1 270 > th dose dependent rect. 10 5
397 214.82 wind 1.0 30 > th dose independent rect. 23 23
411 215.22 precipitation 0.1 270 > th dose independent rect. 10 5
413 215.23 temperature 10.0 30 > th dose dependent rect. 23 23
430 215.52 atmosphere 1005.0 30 > th dose independent rect. 20 3
446 215.79 temperature 25.0 270 > th dose dependent rect. 19 1
454 215.88 humidity 70.0 720 > th dose independent rect. 23 10
459 215.93 radiation 40.0 90 > th dose independent rect. 8 1
479 215.95 temperature 10.0 30 > th dose dependent rect. 23 21
481 216.03 wind 5.0 30 < th dose dependent rect. 20 3
495 216.23 radiation 40.0 90 < th dose independent rect. 23 10
504 216.26 temperature 25.0 90 > th dose dependent rect. 21 6
505 216.27 radiation 40.0 90 < th dose dependent rect. 23 11
521 216.44 radiation 40.0 30 < th dose independent rect. 23 12
539 216.62 humidity 60.0 1440 > th dose independent rect. 7 2
544 216.70 radiation 30.0 30 > th dose dependent rect. 9 1
546 216.71 atmosphere 1015.0 30 < th dose independent rect. 23 23
551 216.74 humidity 90.0 270 > th dose independent rect. 13 1
596 216.89 humidity 60.0 90 < th dose independent rect. 18 15
598 216.90 humidity 90.0 270 > th dose dependent rect. 13 1
602 216.92 radiation 40.0 30 > th dose dependent rect. 14 20
603 216.93 humidity 60.0 90 < th dose dependent rect. 18 15
633 217.00 humidity 70.0 30 < th dose dependent rect. 9 1
636 217.02 humidity 80.0 90 > th dose independent rect. 15 1
637 217.02 radiation 10.0 30 < th dose independent rect. 15 1
643 217.03 humidity 60.0 90 > th dose independent rect. 23 10
646 217.04 humidity 80.0 10 > th dose independent rect. 15 1
653 217.04 humidity 80.0 30 > th dose independent rect. 20 3
671 217.11 humidity 60.0 1440 < th dose independent rect. 8 1
685 217.11 humidity 60.0 1440 < th dose dependent rect. 8 1
719 217.17 temperature 25.0 270 > th dose independent rect. 19 1
720 217.17 humidity 60.0 270 < th dose independent rect. 8 1
723 217.17 humidity 60.0 10 < th dose independent rect. 10 1
767 217.17 humidity 60.0 270 < th dose dependent rect. 8 1
903 217.19 wind 1.0 10 < th dose dependent rect. 9 1
956 217.22 wind 1.0 10 < th dose dependent rect. 9 9
962 217.23 humidity 60.0 30 > th dose independent rect. 23 12
965 217.23 wind 1.0 10 < th dose dependent rect. 9 7
987 217.27 wind 1.0 10 < th dose independent rect. 9 1