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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0208100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cyclin-like F-box domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.33 (0.0203) R2 : 0.0359
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.176 (0.0426) R2dN8 : 0.0464 R2N8 : 0.0359
σ : 0.381
deviance : 66.8
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
49.85 0.332 3.17 1.86 0.275 -0.779 1.1 7 -0.0302 20.4 29.91 2684 -- --
52.59 0.34 3.32 0.533 0.232 -0.148 1.14 -- -0.0903 20.2 21.1 6324 -- --
53.66 0.341 3.16 1.87 0.274 -0.798 -- 7.2 -0.0277 20.4 29.99 2683 -- --
56.53 0.352 3.32 0.504 0.233 -0.162 -- -- -0.086 19.7 21.1 6324 -- --
56.51 0.35 3.18 1.65 -- -0.863 -- 8.79 -0.0895 -- 30.22 2031 -- --
53.69 0.343 3.33 0.499 0.248 -- 1.13 -- -0.122 20.6 -- -- -- --
57.79 0.356 3.33 0.463 0.246 -- -- -- -0.122 20.5 -- -- -- --
59.46 0.361 3.31 0.505 -- -0.179 -- -- -0.0857 -- 21.1 6324 -- --
62.83 0.369 3.35 -- 0.238 0.142 -- -- -0.211 19.7 26.1 2480 -- --
61.16 0.365 3.32 0.462 -- -- -- -- -0.124 -- -- -- -- --
63.45 0.373 3.34 -- 0.244 -- -- -- -0.174 20.6 -- -- -- --
65.06 0.376 3.35 -- -- 0.209 -- -- -0.227 -- 26.3 2114 -- --
66.8 0.381 3.33 -- -- -- -- -- -0.176 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 47.89 atmosphere 1015.0 270 < th dose dependent rect. 14 9
7 48.30 atmosphere 1000.0 270 > th dose independent rect. 9 8
12 48.49 atmosphere 1000.0 270 < th dose independent rect. 15 4
22 48.75 atmosphere 1010.0 90 < th dose dependent rect. 17 6
23 48.79 atmosphere 1000.0 270 > th dose independent rect. 10 17
33 48.90 atmosphere 995.0 270 > th dose dependent rect. 10 18
36 48.97 atmosphere 1000.0 270 < th dose independent rect. 5 15
37 48.97 atmosphere 1010.0 270 < th dose dependent rect. 17 2
62 49.17 atmosphere 1005.0 10 < th dose dependent rect. 16 7
78 49.25 wind 1.0 4320 < th dose dependent rect. 16 6
85 49.29 temperature 30.0 270 > th dose independent rect. 16 18
109 49.39 atmosphere 1015.0 270 < th dose dependent rect. 4 18
115 49.42 atmosphere 1000.0 270 < th dose independent sin 21 NA
130 49.46 temperature 30.0 270 > th dose independent rect. 17 16
138 49.48 atmosphere 1010.0 720 < th dose dependent rect. 15 1
168 49.59 temperature 30.0 720 < th dose independent rect. 15 22
171 49.60 wind 1.0 4320 < th dose independent rect. 16 6
224 49.74 temperature 10.0 270 > th dose dependent rect. 15 8
227 49.77 wind 1.0 90 > th dose independent rect. 4 7
235 49.78 temperature 30.0 270 > th dose independent rect. 17 2
250 49.78 wind 9.0 14400 > th dose dependent rect. 13 1
252 49.80 wind 1.0 4320 < th dose independent rect. 19 3
279 49.87 wind 1.0 4320 < th dose independent rect. 21 1
283 49.88 temperature 30.0 270 > th dose independent sin 11 NA
284 49.88 wind 1.0 720 < th dose independent rect. 19 2
295 49.89 atmosphere 1015.0 720 < th dose dependent rect. 11 6
298 49.89 atmosphere 1005.0 270 < th dose dependent rect. 4 16
304 49.90 atmosphere 995.0 90 > th dose dependent rect. 13 16
310 49.91 atmosphere 995.0 270 > th dose dependent rect. 10 7
320 49.93 temperature 25.0 720 > th dose dependent rect. 14 1
355 49.96 temperature 30.0 720 < th dose independent rect. 7 14
371 49.98 wind 1.0 720 < th dose dependent rect. 20 1
374 49.98 atmosphere 1010.0 720 < th dose dependent rect. 9 8
379 49.99 temperature 30.0 720 < th dose independent rect. 9 10
381 50.00 temperature 25.0 30 > th dose independent rect. 19 4
396 50.02 atmosphere 1015.0 270 < th dose independent rect. 14 9
408 50.03 wind 1.0 4320 < th dose dependent rect. 20 2
411 50.03 atmosphere 1010.0 720 < th dose dependent rect. 7 11
447 50.06 atmosphere 995.0 10 > th dose dependent rect. 12 17
462 50.09 temperature 30.0 720 < th dose independent rect. 9 12
489 50.12 humidity 70.0 270 < th dose dependent rect. 18 1
508 50.14 temperature 30.0 720 > th dose independent sin 4 NA
525 50.15 temperature 30.0 1440 > th dose independent rect. 14 23
535 50.16 humidity 70.0 270 < th dose independent rect. 18 1
553 50.17 wind 9.0 14400 < th dose independent rect. 13 1
558 50.17 temperature 30.0 1440 > th dose independent rect. 15 20
566 50.18 temperature 30.0 1440 < th dose independent rect. 15 20
600 50.21 temperature 20.0 30 > th dose dependent rect. 19 4
604 50.22 atmosphere 1000.0 270 > th dose independent sin 20 NA
609 50.22 temperature 30.0 270 < th dose independent rect. 10 18
617 50.23 temperature 30.0 720 > th dose independent rect. 8 9
654 50.25 wind 1.0 4320 > th dose independent rect. 21 1
685 50.27 atmosphere 1015.0 270 < th dose independent rect. 4 18
696 50.28 atmosphere 1000.0 270 > th dose independent sin 22 NA
700 50.28 atmosphere 1005.0 720 < th dose dependent sin 0 NA
730 50.30 temperature 20.0 270 > th dose independent rect. 15 8
766 50.31 atmosphere 1000.0 10 > th dose independent rect. 10 9
783 50.32 wind 9.0 14400 > th dose independent rect. 13 1
787 50.32 atmosphere 1015.0 270 < th dose independent rect. 17 16
805 50.33 temperature 30.0 720 > th dose dependent rect. 9 7
819 50.33 atmosphere 1015.0 90 < th dose dependent rect. 17 17
836 50.34 atmosphere 995.0 270 > th dose dependent sin 19 NA
838 50.34 wind 1.0 43200 < th dose dependent rect. 6 1
845 50.35 atmosphere 1000.0 270 > th dose independent sin 18 NA
861 50.35 atmosphere 1010.0 270 < th dose dependent sin 19 NA
870 50.36 wind 1.0 4320 > th dose independent rect. 16 6
903 50.37 atmosphere 1000.0 270 > th dose independent rect. 22 19
914 50.37 humidity 90.0 10 < th dose dependent rect. 19 15
919 50.38 wind 1.0 14400 < th dose independent rect. 2 1
931 50.38 radiation 1.0 270 > th dose independent rect. 17 15
954 50.39 precipitation 0.1 270 < th dose independent rect. 3 7
963 50.39 atmosphere 995.0 720 > th dose dependent sin 23 NA
966 50.39 precipitation 0.1 270 < th dose dependent rect. 3 7
985 50.40 wind 1.0 14400 < th dose dependent rect. 2 1