BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0116000 Os11g0116000|AK061182
(118 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0116000 Similar to Nonspecific lipid-transfer protein ... 196 4e-51
AK070192 196 4e-51
Os12g0115300 Plant lipid transfer protein/Par allergen fami... 193 2e-50
AK061740 182 6e-47
Os11g0116200 Similar to Nonspecific lipid-transfer protein ... 176 2e-45
Os12g0115500 Plant lipid transfer protein/Par allergen fami... 137 2e-33
AK059819 108 8e-25
Os12g0115000 Similar to Lipid transfer protein LPT II 108 9e-25
Os11g0427800 Similar to Lipid transfer protein LPT III 102 4e-23
Os12g0115100 Nonspecific lipid-transfer protein 1 precursor... 101 1e-22
AK059808 101 1e-22
Os11g0115400 Lipid transfer protein LPT IV 100 3e-22
Os12g0114800 Similar to Lipid transfer protein 98 2e-21
Os11g0115100 Similar to Lipid transfer protein 98 2e-21
Os12g0114500 Similar to Nonspecific lipid-transfer protein ... 97 2e-21
AK102455 97 2e-21
Os11g0114900 Similar to Nonspecific lipid-transfer protein ... 96 6e-21
Os05g0477900 Similar to Nonspecific lipid-transfer protein ... 80 5e-16
Os08g0131200 Plant lipid transfer protein/Par allergen fami... 76 4e-15
AK058805 74 2e-14
Os01g0219500 Plant lipid transfer protein/Par allergen fami... 70 2e-13
Os06g0539500 69 7e-13
Os02g0445300 67 4e-12
Os01g0822900 Similar to Lipid transfer protein 64 3e-11
>Os11g0116000 Similar to Nonspecific lipid-transfer protein 1 (LTP 1) (Major
allergen Pru d 3)
Length = 118
Score = 196 bits (497), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 104/118 (88%), Positives = 104/118 (88%)
Query: 1 MAALNGKXXXXXXXXXXXXXXPGASAAITCGQVGSAIAPCISYVTGRGGLTQGCCNGVKG 60
MAALNGK PGASAAITCGQVGSAIAPCISYVTGRGGLTQGCCNGVKG
Sbjct: 1 MAALNGKVVVAVMVVAMVVAAPGASAAITCGQVGSAIAPCISYVTGRGGLTQGCCNGVKG 60
Query: 61 LNNAARTTADRQAACRCLKTLAGTIKSLNLGAAAGIPGKCGVNVGFPISLSTDCSKVS 118
LNNAARTTADRQAACRCLKTLAGTIKSLNLGAAAGIPGKCGVNVGFPISLSTDCSKVS
Sbjct: 61 LNNAARTTADRQAACRCLKTLAGTIKSLNLGAAAGIPGKCGVNVGFPISLSTDCSKVS 118
>AK070192
Length = 118
Score = 196 bits (497), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 104/118 (88%), Positives = 104/118 (88%)
Query: 1 MAALNGKXXXXXXXXXXXXXXPGASAAITCGQVGSAIAPCISYVTGRGGLTQGCCNGVKG 60
MAALNGK PGASAAITCGQVGSAIAPCISYVTGRGGLTQGCCNGVKG
Sbjct: 1 MAALNGKVVVAVMVVAMVVAAPGASAAITCGQVGSAIAPCISYVTGRGGLTQGCCNGVKG 60
Query: 61 LNNAARTTADRQAACRCLKTLAGTIKSLNLGAAAGIPGKCGVNVGFPISLSTDCSKVS 118
LNNAARTTADRQAACRCLKTLAGTIKSLNLGAAAGIPGKCGVNVGFPISLSTDCSKVS
Sbjct: 61 LNNAARTTADRQAACRCLKTLAGTIKSLNLGAAAGIPGKCGVNVGFPISLSTDCSKVS 118
>Os12g0115300 Plant lipid transfer protein/Par allergen family protein
Length = 118
Score = 193 bits (490), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 103/118 (87%), Positives = 103/118 (87%)
Query: 1 MAALNGKXXXXXXXXXXXXXXPGASAAITCGQVGSAIAPCISYVTGRGGLTQGCCNGVKG 60
MAALN K PGASAAITCGQVGSAIAPCISYVTGRGGLTQGCCNGVKG
Sbjct: 1 MAALNFKAVAAVMVMAMVVAAPGASAAITCGQVGSAIAPCISYVTGRGGLTQGCCNGVKG 60
Query: 61 LNNAARTTADRQAACRCLKTLAGTIKSLNLGAAAGIPGKCGVNVGFPISLSTDCSKVS 118
LNNAARTTADRQAACRCLKTLAGTIKSLNLGAAAGIPGKCGVNVGFPISLSTDCSKVS
Sbjct: 61 LNNAARTTADRQAACRCLKTLAGTIKSLNLGAAAGIPGKCGVNVGFPISLSTDCSKVS 118
>AK061740
Length = 118
Score = 182 bits (461), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 95/118 (80%), Positives = 100/118 (84%)
Query: 1 MAALNGKXXXXXXXXXXXXXXPGASAAITCGQVGSAIAPCISYVTGRGGLTQGCCNGVKG 60
MAA+N K PGASAAITCGQVGSAIAPCISYVTGR GLTQGCCNGVKG
Sbjct: 1 MAAVNCKVVVAVIVVAMVVAAPGASAAITCGQVGSAIAPCISYVTGRSGLTQGCCNGVKG 60
Query: 61 LNNAARTTADRQAACRCLKTLAGTIKSLNLGAAAGIPGKCGVNVGFPISLSTDCSKVS 118
LNNAARTTADRQAACRCLK+LAG+IKSLNLG AG+PGKCGVNVGFPISLSTDC+KVS
Sbjct: 61 LNNAARTTADRQAACRCLKSLAGSIKSLNLGTVAGVPGKCGVNVGFPISLSTDCNKVS 118
>Os11g0116200 Similar to Nonspecific lipid-transfer protein 1 (LTP 1) (Major
allergen Pru d 3)
Length = 132
Score = 176 bits (447), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 92/115 (80%), Positives = 97/115 (84%)
Query: 1 MAALNGKXXXXXXXXXXXXXXPGASAAITCGQVGSAIAPCISYVTGRGGLTQGCCNGVKG 60
MAA+N K PGASAAITCGQVGSAIAPCISYVTGR GLTQGCCNGVKG
Sbjct: 1 MAAVNCKVVVAVIVVAMVVAAPGASAAITCGQVGSAIAPCISYVTGRSGLTQGCCNGVKG 60
Query: 61 LNNAARTTADRQAACRCLKTLAGTIKSLNLGAAAGIPGKCGVNVGFPISLSTDCS 115
LNNAARTTADRQAACRCLK+LAG+IKSLNLG AG+PGKCGVNVGFPISLSTDC+
Sbjct: 61 LNNAARTTADRQAACRCLKSLAGSIKSLNLGTVAGVPGKCGVNVGFPISLSTDCN 115
>Os12g0115500 Plant lipid transfer protein/Par allergen family protein
Length = 93
Score = 137 bits (345), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 68/82 (82%), Positives = 73/82 (89%)
Query: 37 IAPCISYVTGRGGLTQGCCNGVKGLNNAARTTADRQAACRCLKTLAGTIKSLNLGAAAGI 96
I I + GR GLTQGCCNGVKGLNNAARTTADRQAACRCLK+LAG+IKSLNLG AG+
Sbjct: 12 IKSVILNMAGRSGLTQGCCNGVKGLNNAARTTADRQAACRCLKSLAGSIKSLNLGTVAGV 71
Query: 97 PGKCGVNVGFPISLSTDCSKVS 118
PGKCGVNVGFPISLSTDC+KVS
Sbjct: 72 PGKCGVNVGFPISLSTDCNKVS 93
>AK059819
Length = 117
Score = 108 bits (270), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 54/92 (58%), Positives = 68/92 (73%)
Query: 26 AAITCGQVGSAIAPCISYVTGRGGLTQGCCNGVKGLNNAARTTADRQAACRCLKTLAGTI 85
AAI+CGQV SA++PC+SY G G + CC+GV+ LN+AA TTADR+ AC CLK +AG+I
Sbjct: 25 AAISCGQVNSAVSPCLSYARGGSGPSAACCSGVRSLNSAATTTADRRTACNCLKNVAGSI 84
Query: 86 KSLNLGAAAGIPGKCGVNVGFPISLSTDCSKV 117
LN G AA IP KCGV++ + IS S DCS V
Sbjct: 85 SGLNAGNAASIPSKCGVSIPYTISPSIDCSSV 116
>Os12g0115000 Similar to Lipid transfer protein LPT II
Length = 110
Score = 108 bits (270), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 54/92 (58%), Positives = 68/92 (73%)
Query: 26 AAITCGQVGSAIAPCISYVTGRGGLTQGCCNGVKGLNNAARTTADRQAACRCLKTLAGTI 85
AAI+CGQV SA++PC+SY G G + CC+GV+ LN+AA TTADR+ AC CLK +AG+I
Sbjct: 18 AAISCGQVNSAVSPCLSYARGGSGPSAACCSGVRSLNSAATTTADRRTACNCLKNVAGSI 77
Query: 86 KSLNLGAAAGIPGKCGVNVGFPISLSTDCSKV 117
LN G AA IP KCGV++ + IS S DCS V
Sbjct: 78 SGLNAGNAASIPSKCGVSIPYTISPSIDCSSV 109
>Os11g0427800 Similar to Lipid transfer protein LPT III
Length = 117
Score = 102 bits (255), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 55/91 (60%), Positives = 65/91 (71%), Gaps = 1/91 (1%)
Query: 28 ITCGQVGSAIAPCISYVTGRG-GLTQGCCNGVKGLNNAARTTADRQAACRCLKTLAGTIK 86
ITCGQV SA+ PC++Y G G G + CCNGV+ L +AARTTADR+ AC CLK A IK
Sbjct: 26 ITCGQVNSAVGPCLTYARGGGAGPSAACCNGVRSLKSAARTTADRRTACNCLKNAARGIK 85
Query: 87 SLNLGAAAGIPGKCGVNVGFPISLSTDCSKV 117
LN G AA IP KCGV+V + IS S DCS+V
Sbjct: 86 GLNAGNAASIPSKCGVSVPYTISASIDCSRV 116
>Os12g0115100 Nonspecific lipid-transfer protein 1 precursor (LTP 1) (PAPI)
Length = 116
Score = 101 bits (251), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 53/91 (58%), Positives = 63/91 (69%)
Query: 28 ITCGQVGSAIAPCISYVTGRGGLTQGCCNGVKGLNNAARTTADRQAACRCLKTLAGTIKS 87
ITCGQV SA+ PC++Y G G + CC+GV+ L AA TTADR+ AC CLK A IK
Sbjct: 26 ITCGQVNSAVGPCLTYARGGAGPSAACCSGVRSLKAAASTTADRRTACNCLKNAARGIKG 85
Query: 88 LNLGAAAGIPGKCGVNVGFPISLSTDCSKVS 118
LN G AA IP KCGV+V + IS S DCS+VS
Sbjct: 86 LNAGNAASIPSKCGVSVPYTISASIDCSRVS 116
>AK059808
Length = 116
Score = 101 bits (251), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 53/91 (58%), Positives = 63/91 (69%)
Query: 28 ITCGQVGSAIAPCISYVTGRGGLTQGCCNGVKGLNNAARTTADRQAACRCLKTLAGTIKS 87
ITCGQV SA+ PC++Y G G + CC+GV+ L AA TTADR+ AC CLK A IK
Sbjct: 26 ITCGQVNSAVGPCLTYARGGAGPSAACCSGVRSLKAAASTTADRRTACNCLKNAARGIKG 85
Query: 88 LNLGAAAGIPGKCGVNVGFPISLSTDCSKVS 118
LN G AA IP KCGV+V + IS S DCS+VS
Sbjct: 86 LNAGNAASIPSKCGVSVPYTISASIDCSRVS 116
>Os11g0115400 Lipid transfer protein LPT IV
Length = 116
Score = 100 bits (248), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 52/91 (57%), Positives = 63/91 (69%)
Query: 28 ITCGQVGSAIAPCISYVTGRGGLTQGCCNGVKGLNNAARTTADRQAACRCLKTLAGTIKS 87
ITCGQV SA+ PC++Y G G + CC+GV+ L AA +TADR+ AC CLK A IK
Sbjct: 26 ITCGQVNSAVGPCLTYARGGAGPSAACCSGVRSLKAAASSTADRRTACNCLKNAARGIKG 85
Query: 88 LNLGAAAGIPGKCGVNVGFPISLSTDCSKVS 118
LN G AA IP KCGV+V + IS S DCS+VS
Sbjct: 86 LNAGNAASIPSKCGVSVPYTISASIDCSRVS 116
>Os12g0114800 Similar to Lipid transfer protein
Length = 121
Score = 97.8 bits (242), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 49/90 (54%), Positives = 63/90 (70%), Gaps = 1/90 (1%)
Query: 29 TCGQVGSAIAPCISYVTGRGGLTQGCCN-GVKGLNNAARTTADRQAACRCLKTLAGTIKS 87
+CG V S+IAPC+SYV GR C GV+ LN A ++ADR+ AC CLK +A + ++
Sbjct: 31 SCGDVTSSIAPCLSYVMGRESSPSSSCCSGVRTLNGKASSSADRRTACSCLKNMASSFRN 90
Query: 88 LNLGAAAGIPGKCGVNVGFPISLSTDCSKV 117
LN+G AA IP KCGV+V FPIS S DCSK+
Sbjct: 91 LNMGNAASIPSKCGVSVAFPISTSVDCSKI 120
>Os11g0115100 Similar to Lipid transfer protein
Length = 121
Score = 97.8 bits (242), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 49/90 (54%), Positives = 63/90 (70%), Gaps = 1/90 (1%)
Query: 29 TCGQVGSAIAPCISYVTGRGGLTQGCCN-GVKGLNNAARTTADRQAACRCLKTLAGTIKS 87
+CG V S+IAPC+SYV GR C GV+ LN A ++ADR+ AC CLK +A + ++
Sbjct: 31 SCGDVTSSIAPCLSYVMGRESSPSSSCCSGVRTLNGKASSSADRRTACSCLKNMASSFRN 90
Query: 88 LNLGAAAGIPGKCGVNVGFPISLSTDCSKV 117
LN+G AA IP KCGV+V FPIS S DCSK+
Sbjct: 91 LNMGNAASIPSKCGVSVAFPISTSVDCSKI 120
>Os12g0114500 Similar to Nonspecific lipid-transfer protein (LTP) (Fragment)
Length = 119
Score = 97.4 bits (241), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/91 (57%), Positives = 60/91 (65%), Gaps = 1/91 (1%)
Query: 29 TCGQVGSAIAPCISYVTGR-GGLTQGCCNGVKGLNNAARTTADRQAACRCLKTLAGTIKS 87
TCGQV S +APCI Y TGR T GCC+GV+ LN+AA TTADRQ C CLK +
Sbjct: 29 TCGQVVSMLAPCIMYATGRVSAPTGGCCDGVRTLNSAAATTADRQTTCACLKQQTSAMGG 88
Query: 88 LNLGAAAGIPGKCGVNVGFPISLSTDCSKVS 118
L AGIP KCGVN+ + IS STDCS+V
Sbjct: 89 LRPDLVAGIPSKCGVNIPYAISPSTDCSRVH 119
>AK102455
Length = 119
Score = 97.4 bits (241), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/91 (57%), Positives = 60/91 (65%), Gaps = 1/91 (1%)
Query: 29 TCGQVGSAIAPCISYVTGR-GGLTQGCCNGVKGLNNAARTTADRQAACRCLKTLAGTIKS 87
TCGQV S +APCI Y TGR T GCC+GV+ LN+AA TTADRQ C CLK +
Sbjct: 29 TCGQVVSMLAPCIMYATGRVSAPTGGCCDGVRTLNSAAATTADRQTTCACLKQQTSAMGG 88
Query: 88 LNLGAAAGIPGKCGVNVGFPISLSTDCSKVS 118
L AGIP KCGVN+ + IS STDCS+V
Sbjct: 89 LRPDLVAGIPSKCGVNIPYAISPSTDCSRVH 119
>Os11g0114900 Similar to Nonspecific lipid-transfer protein (LTP) (Fragment)
Length = 119
Score = 95.9 bits (237), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 51/91 (56%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Query: 29 TCGQVGSAIAPCISYVTGR-GGLTQGCCNGVKGLNNAARTTADRQAACRCLKTLAGTIKS 87
TCGQV S +APCI Y TGR T GCC+GV+ LN+AA TTADRQ C CLK +
Sbjct: 29 TCGQVVSMLAPCIMYATGRVSAPTGGCCDGVRTLNSAAATTADRQTTCACLKQQTSAMGG 88
Query: 88 LNLGAAAGIPGKCGVNVGFPISLSTDCSKVS 118
L AGIP KC VN+ + IS STDCS+V
Sbjct: 89 LRPDLVAGIPSKCDVNIPYAISPSTDCSRVH 119
>Os05g0477900 Similar to Nonspecific lipid-transfer protein 1 (LTP 1) (Major
allergen Pru d 3)
Length = 129
Score = 79.7 bits (195), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 43/96 (44%), Positives = 62/96 (64%), Gaps = 1/96 (1%)
Query: 24 ASAAITCGQVGSAIAPCISYVTGRGGLTQGCCNGVKGLNNAARTTADRQAACRCLKTL-A 82
A AA++C V + + PC+ YV G + CC G++ + AARTTADR+AAC CLK + A
Sbjct: 34 ARAALSCSTVYNTLLPCLPYVQSGGAVPAACCGGIRSVVAAARTTADRRAACTCLKNVAA 93
Query: 83 GTIKSLNLGAAAGIPGKCGVNVGFPISLSTDCSKVS 118
G + AAG+PG+CGV+V F IS + +C+ V+
Sbjct: 94 GAAGGPYISRAAGLPGRCGVSVPFKISPNVNCNAVN 129
>Os08g0131200 Plant lipid transfer protein/Par allergen family protein
Length = 120
Score = 76.3 bits (186), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Query: 27 AITCGQVGSAIAPCISYVTGRGGLTQG-CCNGVKGLNNAARTTADRQAACRCLKTLAGTI 85
A+TCG V +++ PC++Y+TG+ G CC GV+ L TA+R+ AC C+K A
Sbjct: 28 AVTCGDVDASLLPCVAYLTGKAAAPSGDCCAGVRHLRTLPVGTAERRFACDCVKKAAARF 87
Query: 86 KSLNLGAAAGIPGKCGVNVGFPISLSTDCSKV 117
K LN A +P KC + FP+SL DC+ +
Sbjct: 88 KGLNGDAIRDLPAKCAAPLPFPLSLDFDCNTI 119
>AK058805
Length = 75
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 51/83 (61%), Gaps = 10/83 (12%)
Query: 36 AIAPCISYVTGRGGLTQGCCNGVKGLNNAARTTADRQAACRCLKTLAGTIKSLNLGAAAG 95
A+ PC++Y G GV+ L AA +TADR+ AC CLK A IK LN G AA
Sbjct: 3 ALGPCLTYARG----------GVRSLKAAASSTADRRTACNCLKNAARGIKGLNAGNAAS 52
Query: 96 IPGKCGVNVGFPISLSTDCSKVS 118
IP KCGV+V + IS S DCS+VS
Sbjct: 53 IPSKCGVSVPYTISASIDCSRVS 75
>Os01g0219500 Plant lipid transfer protein/Par allergen family protein
Length = 127
Score = 70.5 bits (171), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 54/93 (58%), Gaps = 2/93 (2%)
Query: 28 ITCGQVGSAIAPCISYVTGRGGLTQG--CCNGVKGLNNAARTTADRQAACRCLKTLAGTI 85
+ CGQV +APC+ Y+ G G+T CC+ + LN A ADR A C C+K A
Sbjct: 30 VQCGQVMQLMAPCMPYLAGAPGMTPYGICCDSLGVLNRMAPAPADRVAVCNCVKDAAAGF 89
Query: 86 KSLNLGAAAGIPGKCGVNVGFPISLSTDCSKVS 118
+++ A+ +P CG+++ F I+ + DC++V+
Sbjct: 90 PAVDFSRASALPAACGLSISFTIAPNMDCNQVT 122
>Os06g0539500
Length = 136
Score = 68.9 bits (167), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 54/92 (58%), Gaps = 2/92 (2%)
Query: 27 AITCGQVGSAIAPCISYVTGRGGLTQG-CCNGVKGLNNAARTTADRQAACRCLKT-LAGT 84
+++C V + + PC+ ++ G G CC+G+ GL AA TT DRQAAC CLK+ ++G
Sbjct: 45 SVSCSDVVADVTPCLGFLQGDDDHPSGECCDGLSGLVAAAATTEDRQAACECLKSAVSGQ 104
Query: 85 IKSLNLGAAAGIPGKCGVNVGFPISLSTDCSK 116
++ A +P CG+++ + S DCS+
Sbjct: 105 FTAVEAAPARDLPADCGLSLPYTFSPDVDCSQ 136
>Os02g0445300
Length = 75
Score = 66.6 bits (161), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 46/77 (59%), Gaps = 4/77 (5%)
Query: 43 YVTGR-GGLTQGCCNGVKGLNNAARTTADRQAACRCLKTLAGTIKSLNLGAAAGIPGKCG 101
Y TGR T GCC+GV+ LN+AA AD Q C C+K + L AGIP KCG
Sbjct: 2 YATGRVSAPTGGCCDGVRTLNSAA---ADHQTTCACIKQQTSGMGGLRPDLVAGIPSKCG 58
Query: 102 VNVGFPISLSTDCSKVS 118
VN+ + IS STDCS+V
Sbjct: 59 VNIPYAISPSTDCSRVH 75
>Os01g0822900 Similar to Lipid transfer protein
Length = 120
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 54/94 (57%), Gaps = 1/94 (1%)
Query: 26 AAITCGQVGSAIAPCISYVTGRGGLTQGCCNGVKGLNNAARTTADRQAACRCLKTLA-GT 84
AAI+C V + + PC+ YV G + + CC G++ L AA T DR+ C CLK +A G
Sbjct: 27 AAISCSAVYNTLMPCLPYVQAGGTVPRACCGGIQSLLAAANNTPDRRTICGCLKNVANGA 86
Query: 85 IKSLNLGAAAGIPGKCGVNVGFPISLSTDCSKVS 118
+ AA +P KC V++ + IS S +C+ ++
Sbjct: 87 SGGPYITRAAALPSKCNVSLPYKISTSVNCNAIN 120
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.132 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,279,428
Number of extensions: 108010
Number of successful extensions: 338
Number of sequences better than 1.0e-10: 25
Number of HSP's gapped: 326
Number of HSP's successfully gapped: 25
Length of query: 118
Length of database: 17,035,801
Length adjustment: 85
Effective length of query: 33
Effective length of database: 12,597,611
Effective search space: 415721163
Effective search space used: 415721163
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 149 (62.0 bits)