BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0551200 Os10g0551200|AK106239
(398 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0551200 Similar to Scl1 protein (Fragment) 650 0.0
Os03g0103400 GRAS transcription factor domain containing pr... 357 8e-99
Os02g0662700 Similar to Scl1 protein (Fragment) 323 2e-88
Os04g0555000 GRAS transcription factor domain containing pr... 318 5e-87
Os02g0663100 GRAS transcription factor domain containing pr... 316 2e-86
Os03g0723000 GRAS transcription factor domain containing pr... 96 5e-20
Os11g0507300 87 2e-17
Os01g0646300 Similar to RGA2 protein 84 2e-16
Os11g0124300 Similar to SCARECROW 84 2e-16
Os03g0193000 GRAS transcription factor domain containing pr... 81 2e-15
Os03g0263300 79 7e-15
Os12g0122000 SCARECROW 77 2e-14
Os05g0574900 GRAS transcription factor domain containing pr... 75 6e-14
Os01g0881500 Similar to Scarecrow-like 1 (Fragment) 74 2e-13
Os03g0707600 OsGAI 73 3e-13
Os07g0583600 Chitin-inducible gibberellin-responsive protein 66 5e-11
>Os10g0551200 Similar to Scl1 protein (Fragment)
Length = 398
Score = 650 bits (1676), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/384 (86%), Positives = 333/384 (86%)
Query: 15 GGFVPALKPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREILARLNYRLPAAPTAGTP 74
GGFVPALKP REILARLNYRLPAAPTAGTP
Sbjct: 15 GGFVPALKPKAEAANDEAAAAVEQLAEAAKLAEAGDAFGAREILARLNYRLPAAPTAGTP 74
Query: 75 LLRSAFYFKEALRLTLSPTGDAPAPSASTPYDVVVKLGAYKAFSEVSPVLQFAHLTCVQA 134
LLRSAFYFKEALRLTLSPTGDAPAPSASTPYDVVVKLGAYKAFSEVSPVLQFAHLTCVQA
Sbjct: 75 LLRSAFYFKEALRLTLSPTGDAPAPSASTPYDVVVKLGAYKAFSEVSPVLQFAHLTCVQA 134
Query: 135 VLDELGGAGCIHVLDFDIGMGEQWASLMQELAQLRPAAALKVTALVSPASHHPLELQLIH 194
VLDELGGAGCIHVLDFDIGMGEQWASLMQELAQLRPAAALKVTALVSPASHHPLELQLIH
Sbjct: 135 VLDELGGAGCIHVLDFDIGMGEQWASLMQELAQLRPAAALKVTALVSPASHHPLELQLIH 194
Query: 195 ENLSGFAAELGVFFHFTVFNIDTLDPAELLANATAGDAVAVHLPVGPAHAAATPAVLRLV 254
ENLSGFAAELGVFFHFTVFNIDTLDPAELLANATAGDAVAVHLPVGPAHAAATPAVLRLV
Sbjct: 195 ENLSGFAAELGVFFHFTVFNIDTLDPAELLANATAGDAVAVHLPVGPAHAAATPAVLRLV 254
Query: 255 KRLGAKVVVSVDRGCDRSDLPFAAHLFHSFHSAVYLLESIDAVGTDPDTASKIERYLIHP 314
KRLGAKVVVSVDRGCDRSDLPFAAHLFHSFHSAVYLLESIDAVGTDPDTASKIERYLIHP
Sbjct: 255 KRLGAKVVVSVDRGCDRSDLPFAAHLFHSFHSAVYLLESIDAVGTDPDTASKIERYLIHP 314
Query: 315 AIEQCVVASHRAASAMDKXXXXXXXXXXXXXXXXXXXXTTFAESQAESLLSKVHVRGFRV 374
AIEQCVVASHRAASAMDK TTFAESQAESLLSKVHVRGFRV
Sbjct: 315 AIEQCVVASHRAASAMDKAPPPPWRAAFAAAGFAPVQATTFAESQAESLLSKVHVRGFRV 374
Query: 375 EKRAGSLCLYWQRGELVSVSAWRC 398
EKRAGSLCLYWQRGELVSVSAWRC
Sbjct: 375 EKRAGSLCLYWQRGELVSVSAWRC 398
>Os03g0103400 GRAS transcription factor domain containing protein
Length = 474
Score = 357 bits (916), Expect = 8e-99, Method: Compositional matrix adjust.
Identities = 207/359 (57%), Positives = 249/359 (69%), Gaps = 21/359 (5%)
Query: 55 REILAR--LNYRLPAAPTAGTPLLRSAFYFKEALRLTL-------SPTGDAPAPSASTPY 105
R ILAR +NYRLPA +A PLLRSA YFK+ALR L S + P P+
Sbjct: 122 RHILARPAINYRLPA--SAAPPLLRSALYFKDALRRALISDDDSSSSSTPPPPLHEPHPH 179
Query: 106 DVVVKLGAYKAFSEVSPVLQFAHLTCVQAVLDELG-GAGCIHVLDFDIGMGEQWASLMQE 164
D+++KL +YK+FS++SP+L FAH TCVQAVLDEL A CIH+LDFDIG+GEQWASLM +
Sbjct: 180 DLLLKLTSYKSFSDLSPLLHFAHFTCVQAVLDELAPSASCIHLLDFDIGVGEQWASLMHD 239
Query: 165 LAQLRPAAALKVTAL---VSPASHHPLELQLIHENLSGFAAELGVFFHFTVFNIDTLDPA 221
LA P ALKVTAL S +SHHPL+LQLIH+ LS FAA+L V F F FN+D D
Sbjct: 240 LAHRHPGVALKVTALNVTASSSSHHPLQLQLIHDTLSTFAADLSVPFRFAAFNLDATDLT 299
Query: 222 ELLANATAGDAVAVHLPVGPAHAAATPAVLRLVKRLGAKVVVSVDRGCDRSDLPFAAHLF 281
LLA A A DA+AVHLPVG HA A P+VL LV+RLGAK+VVSVDRGCDR +LPFAAHL
Sbjct: 300 PLLAVAAATDAIAVHLPVGSVHATAVPSVLHLVRRLGAKLVVSVDRGCDRGELPFAAHLL 359
Query: 282 HSFHSAVYLLESIDAVGTDPDTASKIERYLIHPAIEQCVVASHRAASAM--DKXXXXXXX 339
+ S V LLES+DA+GTD D A+KIER+ + P I++CV RAA + DK
Sbjct: 360 QALRSTVSLLESLDAMGTDSDVAAKIERFWVQPKIQECV----RAAVGVGGDKTAASAWR 415
Query: 340 XXXXXXXXXXXXXTTFAESQAESLLSKVHVRGFRVEKRAGSLCLYWQRGELVSVSAWRC 398
++ AE+QAESLL K+ VRGFR+E+RAGSL L+WQRGEL SVSAWRC
Sbjct: 416 ATLASAGFVPVQVSSMAEAQAESLLKKLPVRGFRLERRAGSLFLHWQRGELASVSAWRC 474
>Os02g0662700 Similar to Scl1 protein (Fragment)
Length = 531
Score = 323 bits (828), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 179/352 (50%), Positives = 231/352 (65%), Gaps = 19/352 (5%)
Query: 55 REILARLNYRLPAAPTAGTPLLRSAFYFKEALRLTLSPTGDAPAPSASTPYDVVVKLGAY 114
REILARLN +LP G P LRSA Y KEAL L L+ + + ++P DV +KL AY
Sbjct: 191 REILARLNQQLP---QLGKPFLRSASYLKEALLLALADSHHGSS-GVTSPLDVALKLAAY 246
Query: 115 KAFSEVSPVLQFAHLTCVQAVLDELGG--AGCIHVLDFDIGMGEQWASLMQELAQLRPAA 172
K+FS++SPVLQF + T QA+LDE+GG CIHV+DFD+G+G QWAS +QELA R A
Sbjct: 247 KSFSDLSPVLQFTNFTATQALLDEIGGMATSCIHVIDFDLGVGGQWASFLQELAHRRGAG 306
Query: 173 A-----LKVTALVSPASHHPLELQLIHENLSGFAAELGVFFHFTVFNIDTLDPAELLANA 227
LK+TA +S ASHHPLEL L +NLS FAAEL + F F ++D +PAEL++ +
Sbjct: 307 GMALPLLKLTAFMSTASHHPLELHLTQDNLSQFAAELRIPFEFNAVSLDAFNPAELIS-S 365
Query: 228 TAGDAVAVHLPVG-PAHAAATPAVLRLVKRLGAKVVVSVDRGCDRSDLPFAAHLFHSFHS 286
+ + VAV LPVG A A PA+LRLVK+L KVVV++D G DR+DLPF+ H + F S
Sbjct: 366 SGDEVVAVSLPVGCSARAPPLPAILRLVKQLCPKVVVAIDHGGDRADLPFSQHFLNCFQS 425
Query: 287 AVYLLESIDAVGTDPDTASKIERYLIHPAIEQCVVASHRAASAMDKXXXXXXXXXXXXXX 346
V+LL+S+DA G D D+A KIER+LI P +E V+ H+A A+
Sbjct: 426 CVFLLDSLDAAGIDADSACKIERFLIQPRVEDAVIGRHKAQKAI------AWRSVFAATG 479
Query: 347 XXXXXXTTFAESQAESLLSKVHVRGFRVEKRAGSLCLYWQRGELVSVSAWRC 398
+ AE+QA+ LL +V VRGF VEKR +L LYWQRGELVS+S+WRC
Sbjct: 480 FKPVQLSNLAEAQADCLLKRVQVRGFHVEKRGAALTLYWQRGELVSISSWRC 531
>Os04g0555000 GRAS transcription factor domain containing protein
Length = 711
Score = 318 bits (814), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 181/351 (51%), Positives = 224/351 (63%), Gaps = 18/351 (5%)
Query: 55 REILARLNYRLPAAPTAGTPLLRSAFYFKEALRLTLSPTGDAPAPSASTPYDVVVKLGAY 114
REILARLN +LP G P LRSA Y K+AL L L+ G A ++P DV +KL AY
Sbjct: 372 REILARLNQQLP---PIGKPFLRSASYLKDALLLALA-DGHHAATRLTSPLDVALKLTAY 427
Query: 115 KAFSEVSPVLQFAHLTCVQAVLDELGG--AGCIHVLDFDIGMGEQWASLMQELAQLRPAA 172
K+FS++SPVLQFA+ T QA+LDE+ A CI V+DFD+G+G QWAS +QELA +
Sbjct: 428 KSFSDLSPVLQFANFTVTQALLDEIASTTASCIRVIDFDLGVGGQWASFLQELAHRCGSG 487
Query: 173 A-----LKVTALVSPASHHPLELQLIHENLSGFAAELGVFFHFTVFNIDTLDPAELLANA 227
LK+TA VS ASHHPLEL L +NLS FAA+LG+ F F N+D DP EL+A
Sbjct: 488 GVSLPMLKLTAFVSAASHHPLELHLTQDNLSQFAADLGIPFEFNAINLDAFDPMELIA-P 546
Query: 228 TAGDAVAVHLPVGPAHAAATPAVLRLVKRLGAKVVVSVDRGCDRSDLPFAAHLFHSFHSA 287
TA + VAV LPVG + PA+L+LVK+L K+VV++D G DRSDLPF+ H + S
Sbjct: 547 TADEVVAVSLPVGCSARTPLPAMLQLVKQLAPKIVVAIDYGSDRSDLPFSQHFLNCLQSC 606
Query: 288 VYLLESIDAVGTDPDTASKIERYLIHPAIEQCVVASHRAASAMDKXXXXXXXXXXXXXXX 347
+ LLES+DA GTD D SKIER+LI P +E V+ RA A+
Sbjct: 607 LCLLESLDAAGTDADAVSKIERFLIQPRVEDAVLGRRRADKAI------AWRTVLTSAGF 660
Query: 348 XXXXXTTFAESQAESLLSKVHVRGFRVEKRAGSLCLYWQRGELVSVSAWRC 398
+ AE+QA+ LL +V VRGF VEKR L LYWQRGELVSVSAWRC
Sbjct: 661 APQPLSNLAEAQADCLLKRVQVRGFHVEKRGAGLALYWQRGELVSVSAWRC 711
>Os02g0663100 GRAS transcription factor domain containing protein
Length = 715
Score = 316 bits (810), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 177/352 (50%), Positives = 228/352 (64%), Gaps = 19/352 (5%)
Query: 55 REILARLNYRLPAAPTAGTPLLRSAFYFKEALRLTLSPTGDAPAPSASTPYDVVVKLGAY 114
REILARLN +LP G P LRSA Y +EAL L L+ + S +TP DV +KL AY
Sbjct: 375 REILARLNQQLP---PLGKPFLRSASYLREALLLALADSHHG-VSSVTTPLDVALKLAAY 430
Query: 115 KAFSEVSPVLQFAHLTCVQAVLDELGGAG--CIHVLDFDIGMGEQWASLMQELAQLRPAA 172
K+FS++SPVLQFA+ T QA+LDE+GG CIHV+DFD+G+G QWAS +QELA R A
Sbjct: 431 KSFSDLSPVLQFANFTATQALLDEIGGTATSCIHVIDFDLGVGGQWASFLQELAHRRAAG 490
Query: 173 A-----LKVTALVSPASHHPLELQLIHENLSGFAAELGVFFHFTVFNIDTLDPAELLANA 227
LK+TA VS ASHHPLEL L +NLS FAA+LG+ F F ++D +P EL++ +
Sbjct: 491 GVTLPLLKLTAFVSTASHHPLELHLTQDNLSQFAADLGIPFEFNAVSLDAFNPGELIS-S 549
Query: 228 TAGDAVAVHLPVG-PAHAAATPAVLRLVKRLGAKVVVSVDRGCDRSDLPFAAHLFHSFHS 286
T + VAV LPVG A A PA+LRLVK+L K+VV++D G DR+DL F+ H + F S
Sbjct: 550 TGDEVVAVSLPVGCSARAPPLPAILRLVKQLSPKIVVAIDHGADRADLSFSQHFLNCFQS 609
Query: 287 AVYLLESIDAVGTDPDTASKIERYLIHPAIEQCVVASHRAASAMDKXXXXXXXXXXXXXX 346
V+LL+S+DA G D D+A KIER+LI P + V+ H+ A+
Sbjct: 610 CVFLLDSLDAAGIDADSACKIERFLIQPRVHDMVLGRHKVHKAI------AWRSVFAAAG 663
Query: 347 XXXXXXTTFAESQAESLLSKVHVRGFRVEKRAGSLCLYWQRGELVSVSAWRC 398
+ AE+QA+ LL +V VRGF VEK +L LYWQRGELVS+S+WRC
Sbjct: 664 FKPVPPSNLAEAQADCLLKRVQVRGFHVEKCGAALTLYWQRGELVSISSWRC 715
>Os03g0723000 GRAS transcription factor domain containing protein
Length = 578
Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 102/350 (29%), Positives = 149/350 (42%), Gaps = 25/350 (7%)
Query: 67 AAPTAGTPLLRSAFYFKEALRLTLSPTGDAP---APSASTPYDVVVKLGAYKAFSEVSPV 123
AA AG P R AFYF +AL L+ AP P A D + YK ++ P
Sbjct: 235 AATDAGDPSERLAFYFADALSRRLACGTGAPPSAEPDARFASDELTL--CYKTLNDACPY 292
Query: 124 LQFAHLTCVQAVLDELGGAGCIHVLDFDIGMGEQWASLMQELAQLRPAAA---LKVTALV 180
+FAHLT QA+L+ G A IH++DF I G QWA+L+Q LA RP +++T +
Sbjct: 293 SKFAHLTANQAILEATGAATKIHIVDFGIVQGIQWAALLQALAT-RPEGKPTRIRITGVP 351
Query: 181 SP--ASHHPLELQLIHENLSGFAAELGVFFHFT--VFNIDTLDPAELLANATAGDAVAVH 236
SP L + L FA LGV F F + + L+ ++ L +AVAV+
Sbjct: 352 SPLLGPQPAASLAATNTRLRDFAKLLGVDFEFVPLLRPVHELNKSDFLVEPD--EAVAVN 409
Query: 237 LPVGPAHAAATP-----AVLRLVKRLGAKVVVSVDRGCDRSDLPFAAHLFHSFHSAVYLL 291
+ H VLRL K L VV + + F ++ L
Sbjct: 410 FMLQLYHLLGDSDELVRRVLRLAKSLSPAVVTLGEYEVSLNRAGFVDRFANALSYYRSLF 469
Query: 292 ESID-AVGTDPDTASKIERYLIHPAIEQCVVASHRAASAMDKXXXXXXXXXXXXXXXXXX 350
ES+D A+ D ++ER++ I++ V A
Sbjct: 470 ESLDVAMTRDSPERVRVERWMFGERIQRAVGPEEGADRTERMAGSSEWQTLMEWCGFEPV 529
Query: 351 XXTTFAESQAESLLSKVHVRGFR---VEKRAGSLCLYWQRGELVSVSAWR 397
+ +A SQA+ LL + ++ VE L L W++ L++VSAWR
Sbjct: 530 PLSNYARSQADLLLWNYDSK-YKYSLVELPPAFLSLAWEKRPLLTVSAWR 578
>Os11g0507300
Length = 772
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 81/298 (27%), Positives = 131/298 (43%), Gaps = 19/298 (6%)
Query: 111 LGAYKAFSEVSPVLQFAHLTCVQAVLDELGGAGCIHVLDFDIGMGEQWASLMQELAQLRP 170
L Y+ + P ++FAH T QA+ + G +HV+D DI G QW + +Q LA RP
Sbjct: 484 LKVYQILYQACPYIKFAHFTANQAIFEAFHGEDRVHVVDLDILQGYQWPAFLQALAA-RP 542
Query: 171 AA--ALKVTALVSPASHHPLELQLIHENLSGFAAELGVFFHFTVFNIDTLD---PAELLA 225
L++T + H P ++ +L+ AA L V F F D L+ PA L
Sbjct: 543 GGPPTLRLTGV----GHPPAAVRETGRHLASLAASLRVPFEFHAAAADRLERLRPAAL-- 596
Query: 226 NATAGDAVAVHLPVGPAH---AAATPAVLRLVKRLGAKVVVSVDRGCDRSDLPFAAHLFH 282
+ G+A+AV+ V H ++ P +L +++ K++ V++ + F
Sbjct: 597 HRRVGEALAVNA-VNRLHRVPSSHLPPLLSMIRDQAPKIITLVEQEAAHNGPYFLGRFLE 655
Query: 283 SFHSAVYLLESIDAVGTDPDTAS-KIERYLIHPAIEQCVVASHRAASAMDKXXXXXXXXX 341
+ H + +S+DA TA K+E+ L+ P I VVA A
Sbjct: 656 ALHYYSAIFDSLDATFPAESTARMKVEQCLLAPEIRN-VVACEGAERVARHERLERWRRL 714
Query: 342 XXXXXXXXXXXTTFAESQAESLLSKVHV-RGFRVEKRAGSLCLYWQRGELVSVSAWRC 398
+ A Q++ LL G+R+ + +G L L WQ +++ SAWRC
Sbjct: 715 MEGRGFEAVPLSAAAVGQSQVLLGLYGAGDGYRLTEDSGCLLLGWQDRAIIAASAWRC 772
>Os01g0646300 Similar to RGA2 protein
Length = 493
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 95/334 (28%), Positives = 140/334 (41%), Gaps = 26/334 (7%)
Query: 77 RSAFYFKEALRLTLSPTGDAPAPSASTPYDVVVKLGAYKAFSEVSPVLQFAHLTCVQAVL 136
R A +F AL L P+ AP P+ + + Y F E P L+FAH T QA+L
Sbjct: 125 RVAVHFTTALSRRLFPSPVAP-PTTDAEHAFL-----YHHFYEACPYLKFAHFTANQAIL 178
Query: 137 DELGGAGCIHVLDFDIGMGEQWASLMQELAQLRPAAA--LKVTALVSPASHHPLELQLIH 194
+ G +HV+DF + G QW +L+Q LA LRP L++T + P+ EL+ +
Sbjct: 179 EAFHGCDHVHVIDFSLMQGLQWPALIQALA-LRPGGPPFLRITGIGPPSPTGRDELRDVG 237
Query: 195 ENLSGFAAELGVFFHFTVFNIDTLDPAE-LLANATAGDAVA------VHLPVG-PAHAAA 246
L+ A + V F F ++LD + G+AVA +H +G PA A
Sbjct: 238 LRLADLARSVRVRFSFRGVAANSLDEVRPWMLQIAPGEAVAFNSVLQLHRLLGDPADQAP 297
Query: 247 TPAVLRLVKRLGAKVVVSVDRGCDRSDLPFAAHLFHS--FHSAVYLLESIDAVGTDPDTA 304
AVL V + K+ +++ D + F + ++SAV+ +S+DA
Sbjct: 298 IDAVLDCVASVRPKIFTVIEQEADHNKTGFLDRFTEALFYYSAVF--DSLDAASASGGAG 355
Query: 305 SKI-ERYLIHPAIEQC-VVASHRAASAMDKXXXXXXXXXXXXXXXXXXXXTTFAESQAES 362
+ + E YL E C +V AA + A QA
Sbjct: 356 NAMAEAYLQR---EICDIVCGEGAARRERHEPLSRWRDRLTRAGLSAVPLGSNALRQARM 412
Query: 363 LLSKVHVRGFRVEKRAGSLCLYWQRGELVSVSAW 396
L+ G VE+ G L L W L S SAW
Sbjct: 413 LVGLFSGEGHSVEEADGCLTLGWHGRPLFSASAW 446
>Os11g0124300 Similar to SCARECROW
Length = 651
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 97/338 (28%), Positives = 142/338 (42%), Gaps = 22/338 (6%)
Query: 72 GTPLLRSAFYFKEAL--RLTLSPTG-----DAPAPSASTPYDVVVKLGAYKAFSEVSPVL 124
GT R A YF EA+ RL S G P+P+A+ + V A++ F+ +SP +
Sbjct: 317 GTSTQRVAAYFAEAMSARLVSSCLGLYAPLPNPSPAAARLHGRVA--AAFQVFNGISPFV 374
Query: 125 QFAHLTCVQAVLDELGGAGCIHVLDFDIGMGEQWASLMQELAQLRPAAALKVTALVSPAS 184
+F+H T QA+ + +H++D DI G QW L LA RP +V AS
Sbjct: 375 KFSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILAS-RPGGPPRVRLTGLGAS 433
Query: 185 HHPLELQLIHENLSGFAAELGVFFHF--TVFNIDTLDPAELLANATAGDAVAVHLPVGPA 242
LE + LS FA LG+ F F LDP +L T +AVAVH
Sbjct: 434 MEALE--ATGKRLSDFADTLGLPFEFCPVADKAGNLDPEKL--GVTRREAVAVHWLRHSL 489
Query: 243 H--AAATPAVLRLVKRLGAKVVVSVDRGCDRSDLPFAAHLFHSFHSAVYLLESIDA-VGT 299
+ + L L++RL KVV V++ S F A + H L +S+DA
Sbjct: 490 YDVTGSDSNTLWLIQRLAPKVVTMVEQDLSHSG-SFLARFVEAIHYYSALFDSLDASYSE 548
Query: 300 DPDTASKIERYLIHPAIEQCVVASHRAASAMDKXXXXXXXXXXXXXXXXXXXXTTFAESQ 359
D +E+ L+ I + A + K + A +Q
Sbjct: 549 DSPERHVVEQQLLSREIRNVLAVGGPARTGDVKFGSWREKLAQSGFRVSSLAGS--AAAQ 606
Query: 360 AESLLSKVHVRGFRVEKRAGSLCLYWQRGELVSVSAWR 397
A LL G+ + + G+L L W+ L++ SAWR
Sbjct: 607 AVLLLGMFPSDGYTLIEENGALKLGWKDLCLLTASAWR 644
>Os03g0193000 GRAS transcription factor domain containing protein
Length = 535
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 79/341 (23%), Positives = 135/341 (39%), Gaps = 17/341 (4%)
Query: 71 AGTPLLRSAFYFKEALRLTLSPTGDAPAPSASTPYDVVVKLGAY-KAFSEVSPVLQFAHL 129
+G P+ R Y E L LS TG A S +L +Y E+ P +F ++
Sbjct: 198 SGEPMQRLGAYMLEGLVARLSSTGHALYKSLKCKEPTSFELMSYMHLLYEICPFFKFGYM 257
Query: 130 TCVQAVLDELGGAGCIHVLDFDIGMGEQWASLMQELAQLRPAA--ALKVTALVSPASHHP 187
+ A+ + + G +H++DF I G QWA+++Q LA RP L++T + S H
Sbjct: 258 SANGAIAEAVKGENFVHIIDFQIAQGSQWATMIQALA-ARPGGPPYLRITGIDDSNSAHA 316
Query: 188 L--ELQLIHENLSGFAAELGVFFHFTVFNIDTLDPAELLANATAGDAVAVHLPVGPAHAA 245
L ++ L A G+ F F + + + +G+ + V+ H
Sbjct: 317 RGGGLDIVGRRLFNIAQSCGLPFEFNAVPAASHEVMLEHLDIRSGEVIVVNFAYQLHHTP 376
Query: 246 ATPA--------VLRLVKRLGAKVVVSVDRGCDRSDLPFAAHLFHSFHSAVYLLESID-A 296
+LR+VK L +VV V++ + + PF + + E+ID A
Sbjct: 377 DESVGIENHRDRILRMVKGLSPRVVTLVEQEANTNTAPFFNRYLETLDYYTAMFEAIDVA 436
Query: 297 VGTDPDTASKIERYLIHPAIEQCVVASHRAASAMDKXXXXXXXXXXXXXXXXXXXXTTFA 356
D E++ + I ++A A +
Sbjct: 437 CPRDDKKRISTEQHCVARDIVN-LIACEGAERVERHEPFGKWRARLSMAGFRPYPLSALV 495
Query: 357 ESQAESLLSKVHVRGFRVEKRAGSLCLYWQRGELVSVSAWR 397
+ + LL H +++E+R G+L L W+ +LV SAWR
Sbjct: 496 NNTIKKLLDSYHSY-YKLEERDGALYLGWKNRKLVVSSAWR 535
>Os03g0263300
Length = 575
Score = 79.0 bits (193), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 83/314 (26%), Positives = 126/314 (40%), Gaps = 34/314 (10%)
Query: 111 LGAYKAFSEVSPVLQFAHLTCVQAVLDELGGAGCIHVLDFDIGMGEQWASLMQEL---AQ 167
L A++ ++SP ++F H T QA+L+ + G +H++D+DI G QWASLMQ + A
Sbjct: 218 LTAFQMLQDMSPYMKFGHFTANQAILEAVSGDRRVHIVDYDIAEGIQWASLMQAMTSRAD 277
Query: 168 LRPAAALKVTALVSPASHHPLELQLIHENLSGFAAELGVFFHFTVFNIDT---LDPAE-- 222
PA L++TA+ +Q LS FAA +G F F +D+ PA
Sbjct: 278 GVPAPHLRITAVSRSGGGGARAVQEAGRRLSAFAASIGQPFSFGQCRLDSDERFRPATVR 337
Query: 223 ------LLANATAGDAVAVHLPVGPAHAAATPAVLRLVKRLGAKVVVSVDRGCDRSD--- 273
L+AN A A P + A+ L + LGAK+V V+ +
Sbjct: 338 MVKGEALVANCVLHQAAATTTIRRPTGSVAS--FLSGMAALGAKLVTVVEEEGEAEKDDD 395
Query: 274 ---------LPFAAHLFHSFHSAVYLLESIDA-VGTDPDTASKIERYLIHPAIEQCVVAS 323
F H + +S++A T +ER ++ P I V
Sbjct: 396 GDSAGDAAAGGFVRQFMEELHRYSAVWDSLEAGFPTQSRVRGLVERVILAPNIAGAV--- 452
Query: 324 HRAASAMDKXXXXXXXXXXXXXXXXXXXXTTFAESQAESLLSKVHVRGFRVEKRA-GSLC 382
RA +D + F SQA LL + G+ VE+ +
Sbjct: 453 SRAYRGVDGEGRCGWGQWMRGSGFTAVPLSCFNHSQARLLLGLFN-DGYTVEETGPNKIV 511
Query: 383 LYWQRGELVSVSAW 396
L W+ L+S S W
Sbjct: 512 LGWKARRLMSASVW 525
>Os12g0122000 SCARECROW
Length = 660
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/236 (31%), Positives = 107/236 (45%), Gaps = 19/236 (8%)
Query: 72 GTPLLRSAFYFKEAL--RLTLSPTG-----DAPAPSASTPYDVVVKLGAYKAFSEVSPVL 124
GT R A YF EA+ RL S G +P+P+ + + V A++ F+ +SP +
Sbjct: 326 GTSTQRVAAYFAEAMSARLVSSCLGLYAPLPSPSPAGARVHGRVA--AAFQVFNGISPFV 383
Query: 125 QFAHLTCVQAVLDELGGAGCIHVLDFDIGMGEQWASLMQELAQLRPAAALKVTALVSPAS 184
+F+H T QA+ + +H++D DI G QW L LA RP +V AS
Sbjct: 384 KFSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILAS-RPGGPPRVRLTGLGAS 442
Query: 185 HHPLELQLIHENLSGFAAELGVFFHF--TVFNIDTLDPAELLANATAGDAVAVHLPVGPA 242
LE + LS FA LG+ F F LDP +L T +AVAVH
Sbjct: 443 MEALE--ATGKRLSDFADTLGLPFEFCPVADKAGNLDPEKL--GVTRREAVAVHWLRHSL 498
Query: 243 H--AAATPAVLRLVKRLGAKVVVSVDRGCDRSDLPFAAHLFHSFHSAVYLLESIDA 296
+ + L L++RL KVV V++ S F A + H L +S+DA
Sbjct: 499 YDVTGSDSNTLWLIQRLAPKVVTMVEQDLSHSG-SFLARFVEAIHYYSALFDSLDA 553
>Os05g0574900 GRAS transcription factor domain containing protein
Length = 500
Score = 75.5 bits (184), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 78/306 (25%), Positives = 120/306 (39%), Gaps = 25/306 (8%)
Query: 114 YKAFSEVSPVLQFAHLTCVQAVLDELGGAGCIHVLDFDIGMGEQWASLMQELAQLRPAAA 173
++ F E P L+FAHL QA+L+ G +HV+DF + G QW SL+Q LA +RP
Sbjct: 154 FRGFYEAGPYLKFAHLAANQAILEAFEGCNSVHVIDFALTDGIQWPSLIQALA-VRPGGP 212
Query: 174 --LKVTALVSPASHHPLELQLIHENLSGFAAELGVFFHFTVFNIDTLDPAE-LLANATAG 230
L++T + A+ + EL+ + L+ FA V F F D LD + G
Sbjct: 213 PFLRITGIGPHAAGNRDELRDVGLRLAEFARSCSVPFAFRGIAADQLDGLRPWMFQVAPG 272
Query: 231 DAVAVH-------------LPVGPAHAAATPAVLRLVKRLGAKVVVSVDRGCDRSDLPFA 277
+AVA++ + A VL V + +V V++ D +
Sbjct: 273 EAVAINSVLQLHRLLVDQDAAAAASFPAPIDGVLDWVASMNPRVFTVVEQEADHNKSSLL 332
Query: 278 AHLFHSFHSAVYLLESIDAV----GTDPDTASKIERYLIHPAIEQCVVASHRAASAMDKX 333
+S + +S++A+ G D E YL E + S +S +++
Sbjct: 333 ERFTNSLFYYASMFDSLEAISRHGGGDGAGNPLAEAYLQG---EIADIVSREGSSRVERH 389
Query: 334 XXX-XXXXXXXXXXXXXXXXTTFAESQAESLLSKVHVRGFRVEKRAGSLCLYWQRGELVS 392
QA L + GF V++ G L L W L S
Sbjct: 390 EQMPRWVERLRRGGMTQLPLGATGLWQAAMQLREFSGAGFGVQENGGFLTLTWHSQRLYS 449
Query: 393 VSAWRC 398
SAWR
Sbjct: 450 ASAWRA 455
>Os01g0881500 Similar to Scarecrow-like 1 (Fragment)
Length = 553
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/239 (25%), Positives = 101/239 (42%), Gaps = 14/239 (5%)
Query: 72 GTPLLRSAFYFKEAL--RLTLSPTGDAPAPSASTPYDVVVKLGAYKAFSEVSPVLQFAHL 129
G P R A Y E L R+ S G A S P + +L A + E+ P +F +
Sbjct: 217 GDPSQRIAAYLVEGLAARIVASGKGIYKALSCKEP-PTLYQLSAMQILFEICPCFRFGFM 275
Query: 130 TCVQAVLDELGGAGCIHVLDFDIGMGEQWASLMQELA-QLRPAAALKVTALVSPASHHPL 188
A+L+ G +H++DFDI G Q+ +L+Q L L++T + P +
Sbjct: 276 AANYAILEACKGEDRVHIIDFDINQGSQYITLIQFLKNNANKPRHLRITGVDDPETVQRT 335
Query: 189 --ELQLIHENLSGFAAELGVFFHFTVFNIDTLDPAELLANATAGDAVAV-------HLPV 239
L++I + L A + G+ F F + D + + G+A+ V HLP
Sbjct: 336 VGGLKVIGQRLEKLAEDCGISFEFRAVGANIGDVTPAMLDCCPGEALVVNFAFQLHHLPD 395
Query: 240 GPAH-AAATPAVLRLVKRLGAKVVVSVDRGCDRSDLPFAAHLFHSFHSAVYLLESIDAV 297
+LR+VK L K+V V++ + + PF + L +S+DA
Sbjct: 396 ESVSIMNERDQLLRMVKGLQPKLVTLVEQDANTNTAPFQTRFREVYDYYAALFDSLDAT 454
>Os03g0707600 OsGAI
Length = 625
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 91/356 (25%), Positives = 136/356 (38%), Gaps = 31/356 (8%)
Query: 68 APTAGTPLLRSAFYFKEALRLTLSPTGDAPAPSASTPYDVVVKLGAYKAFSEVSPVLQFA 127
A + G + + A YF EAL + P+ ST D + F E P L+FA
Sbjct: 271 AASQGGAMRKVAAYFGEALARRVYRF----RPADSTLLDAAFADLLHAHFYESCPYLKFA 326
Query: 128 HLTCVQAVLDELGGAGCIHVLDFDIGMGEQWASLMQELAQLRPAA--ALKVTALVSPASH 185
H T QA+L+ G +HV+DF I G QW +L+Q LA LRP + ++T + P
Sbjct: 327 HFTANQAILEAFAGCHRVHVVDFGIKQGMQWPALLQALA-LRPGGPPSFRLTGVGPPQPD 385
Query: 186 HPLELQLIHENLSGFAAELGVFFHFTVFNIDTLDPAELLANATAGDAVAVHLP----VGP 241
LQ + L+ FA + V F + TL E G+A A P V
Sbjct: 386 ETDALQQVGWKLAQFAHTIRVDFQYRGLVAATLADLEPFMLQPEGEADANEEPEVIAVNS 445
Query: 242 --------AHAAATPAVLRLVKRLGAKVVVSVDRGCDRSDLPFAAHLFHSFHSAVYLLES 293
A A VL V + ++V V++ + + F S H + +S
Sbjct: 446 VFELHRLLAQPGALEKVLGTVHAVRPRIVTVVEQEANHNSGSFLDRFTESLHYYSTMFDS 505
Query: 294 IDAVGTDPDTASKIERYL----------IHPAIEQC-VVASHRAASAMDKXXXXXXXXXX 342
++ + S ++ + C VVA A
Sbjct: 506 LEGGSSGQAELSPPAAGGGGGTDQVMSEVYLGRQICNVVACEGAERTERHETLGQWRNRL 565
Query: 343 XXXXXXXXXXTTFAESQAESLLSK-VHVRGFRVEKRAGSLCLYWQRGELVSVSAWR 397
+ A QA +LL+ G+RVE++ G L L W L++ SAWR
Sbjct: 566 GRAGFEPVHLGSNAYKQASTLLALFAGGDGYRVEEKEGCLTLGWHTRPLIATSAWR 621
>Os07g0583600 Chitin-inducible gibberellin-responsive protein
Length = 544
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 80/340 (23%), Positives = 135/340 (39%), Gaps = 17/340 (5%)
Query: 71 AGTPLLRSAFYFKEALRLTLSPTGDAPAPSASTPYDVVVKLGAYKAF-SEVSPVLQFAHL 129
+G PL R Y E L L+ +G + + L +Y F E P +F ++
Sbjct: 207 SGEPLERLGAYMVEGLVARLASSGISIYKALKCKEPKSSDLLSYMHFLYEACPYFKFGYM 266
Query: 130 TCVQAVLDELGGAGCIHVLDFDIGMGEQWASLMQELAQLRPAA--ALKVTALVSPASHHP 187
+ A+ + + G IH++DF I G QW SL+Q LA RP +++T + S +
Sbjct: 267 SANGAIAEAVKGEDRIHIIDFHISQGAQWISLLQALAA-RPGGPPTVRITGIDDSVSAYA 325
Query: 188 L--ELQLIHENLSGFAAELGVFFHFTVFNIDTLDPAELLANATAGDAVAVHLPVGPAH-- 243
L+L+ LS A+ V F F I G+A+AV+ + H
Sbjct: 326 RGGGLELVGRRLSHIASLCKVPFEFHPLAISGSKVEAAHLGVIPGEALAVNFTLELHHIP 385
Query: 244 ------AAATPAVLRLVKRLGAKVVVSVDRGCDRSDLPFAAHLFHSFHSAVYLLESID-A 296
A +LR+VK L KV+ V+ + + PF + + ESID
Sbjct: 386 DESVSTANHRDRLLRMVKSLSPKVLTLVEMESNTNTAPFPQRFAETLDYYTAIFESIDLT 445
Query: 297 VGTDPDTASKIERYLIHPAIEQCVVASHRAASAMDKXXXXXXXXXXXXXXXXXXXXTTFA 356
+ D +E++ + I ++A A ++
Sbjct: 446 LPRDDRERINMEQHCLAREIVN-LIACEGEERAERYEPFGKWKARLTMAGFRPSPLSSLV 504
Query: 357 ESQAESLLSKVHVRGFRVEKRAGSLCLYWQRGELVSVSAW 396
+ +LL + + +++ +R G+L L W+ LV SAW
Sbjct: 505 NATIRTLL-QSYSDNYKLAERDGALYLGWKSRPLVVSSAW 543
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.135 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,539,036
Number of extensions: 456816
Number of successful extensions: 1474
Number of sequences better than 1.0e-10: 18
Number of HSP's gapped: 1443
Number of HSP's successfully gapped: 18
Length of query: 398
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 295
Effective length of database: 11,657,759
Effective search space: 3439038905
Effective search space used: 3439038905
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 157 (65.1 bits)