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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0646300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to RGA2 protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.09 (0.0435) R2 : 0.129
β1 : -0.938 (0.165) R2dD : 0.0695 R2D : 0.00329
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.01 (0.141) R2dE : 0.109 R2E : 0.0427
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.333 (0.0945) R2dN8 : 0.0331 R2N8 : -0.00688
σ : 0.809
deviance : 301.87
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 24.05
memory length : 2351
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
291.74 0.803 4.08 -0.751 0.403 1.02 -1.18 1.12 -0.333 19.7 18.54 2761 -- --
291.07 0.795 4.09 -0.95 0.372 0.898 -1.2 -- -0.273 19.5 24.83 2733 -- --
294.95 0.8 4.08 -0.721 0.416 1.07 -- 1.31 -0.331 20.7 17.48 2943 -- --
294.51 0.799 4.09 -0.911 0.38 0.866 -- -- -0.257 20.4 25.1 2799 -- --
303.6 0.812 4.08 -0.729 -- 1.03 -- 1.06 -0.314 -- 21.94 3447 -- --
322.85 0.842 4.07 -0.631 0.423 -- -0.957 -- -0.184 20.4 -- -- -- --
325.05 0.844 4.07 -0.606 0.429 -- -- -- -0.187 21.4 -- -- -- --
301.87 0.809 4.09 -0.938 -- 1.01 -- -- -0.333 -- 24.05 2351 -- --
314.46 0.826 4.06 -- 0.39 0.668 -- -- -0.117 20.5 26.15 2792 -- --
335.85 0.856 4.06 -0.603 -- -- -- -- -0.189 -- -- -- -- --
334.72 0.856 4.06 -- 0.429 -- -- -- -0.12 21.3 -- -- -- --
322.82 0.837 4.05 -- -- 0.714 -- -- -0.132 -- 25.92 2686 -- --
345.45 0.868 4.05 -- -- -- -- -- -0.122 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 284.75 temperature 20.0 90 > th dose dependent rect. 14 14
2 285.82 temperature 20.0 90 > th dose dependent rect. 14 16
4 286.41 temperature 20.0 90 > th dose dependent rect. 14 11
9 286.95 temperature 25.0 90 > th dose independent rect. 14 12
28 288.64 temperature 30.0 1440 > th dose independent rect. 13 1
30 288.67 temperature 20.0 30 > th dose independent rect. 14 18
39 289.21 atmosphere 1015.0 270 < th dose dependent rect. 24 9
41 289.32 atmosphere 1010.0 90 < th dose dependent rect. 2 8
45 289.43 atmosphere 1015.0 10 < th dose dependent rect. 2 8
50 289.51 temperature 25.0 720 > th dose dependent rect. 18 15
77 290.05 temperature 25.0 90 > th dose independent rect. 14 16
92 290.37 radiation 20.0 1440 < th dose independent rect. 16 1
108 290.81 temperature 20.0 90 > th dose dependent sin 14 NA
110 290.83 radiation 20.0 1440 > th dose independent rect. 16 15
112 290.89 radiation 20.0 1440 < th dose independent rect. 16 3
114 290.95 radiation 20.0 1440 < th dose independent rect. 16 7
116 290.97 radiation 20.0 1440 > th dose independent rect. 16 1
130 291.00 radiation 20.0 1440 < th dose independent rect. 16 5
131 291.00 radiation 20.0 1440 < th dose independent rect. 16 11
133 291.03 radiation 20.0 1440 < th dose independent rect. 16 9
148 291.33 radiation 20.0 1440 < th dose independent rect. 16 15
157 291.42 precipitation 0.1 43200 > th dose dependent rect. 20 3
167 291.58 humidity 70.0 14400 < th dose independent rect. 19 1
180 291.81 temperature 25.0 720 > th dose dependent sin 11 NA
193 292.03 wind 5.0 43200 > th dose independent rect. 6 8
194 292.04 wind 5.0 43200 < th dose independent rect. 6 8
206 292.17 radiation 1.0 43200 < th dose dependent rect. 21 7
220 292.33 radiation 30.0 1440 < th dose independent rect. 7 1
234 292.43 precipitation 0.1 43200 > th dose independent rect. 20 2
235 292.43 radiation 20.0 1440 > th dose dependent rect. 16 1
250 292.44 wind 7.0 43200 > th dose independent rect. 6 4
253 292.46 precipitation 0.1 43200 < th dose independent rect. 20 2
255 292.46 precipitation 0.1 43200 < th dose dependent rect. 20 2
257 292.47 humidity 50.0 1440 > th dose independent rect. 13 1
261 292.51 temperature 20.0 4320 > th dose dependent rect. 16 1
262 292.53 radiation 30.0 1440 > th dose independent rect. 7 1
283 292.60 humidity 70.0 14400 < th dose independent rect. 19 12
292 292.67 temperature 30.0 1440 > th dose dependent rect. 13 1
293 292.67 wind 5.0 43200 > th dose dependent rect. 5 5
296 292.69 temperature 30.0 720 < th dose dependent rect. 19 1
298 292.72 wind 7.0 43200 < th dose independent rect. 6 4
301 292.75 humidity 70.0 14400 > th dose independent rect. 19 1
334 292.97 radiation 1.0 43200 < th dose dependent rect. 21 4
335 292.98 radiation 40.0 14400 > th dose dependent rect. 13 21
336 293.00 radiation 30.0 14400 > th dose independent rect. 7 1
367 293.11 radiation 40.0 14400 > th dose dependent rect. 15 19
369 293.12 radiation 10.0 14400 < th dose independent rect. 15 15
372 293.13 radiation 40.0 14400 > th dose dependent rect. 7 3
387 293.13 temperature 15.0 4320 > th dose dependent rect. 14 17
398 293.19 humidity 70.0 14400 > th dose independent rect. 19 8
400 293.20 humidity 70.0 14400 > th dose independent rect. 19 4
402 293.20 humidity 70.0 14400 > th dose independent rect. 19 6
407 293.22 wind 7.0 43200 > th dose independent rect. 8 2
430 293.29 humidity 70.0 14400 > th dose independent rect. 19 12
435 293.31 radiation 10.0 14400 < th dose independent rect. 15 4
446 293.31 temperature 20.0 4320 > th dose dependent rect. 6 1
457 293.33 radiation 40.0 1440 > th dose dependent rect. 14 20
461 293.35 radiation 40.0 14400 > th dose dependent rect. 13 1
467 293.36 temperature 25.0 720 > th dose dependent rect. 22 1
506 293.43 wind 5.0 43200 < th dose independent rect. 24 15
507 293.44 temperature 30.0 1440 < th dose independent rect. 13 1
516 293.47 wind 7.0 43200 < th dose independent rect. 8 2
535 293.49 wind 5.0 43200 > th dose dependent rect. 6 2
542 293.50 temperature 15.0 4320 > th dose dependent sin 14 NA
566 293.52 wind 5.0 43200 > th dose independent rect. 24 15
572 293.53 wind 5.0 43200 < th dose independent rect. 19 19
585 293.56 temperature 25.0 4320 < th dose independent rect. 18 1
589 293.56 wind 5.0 43200 > th dose independent rect. 19 19
608 293.60 temperature 30.0 4320 < th dose dependent rect. 22 1
612 293.61 wind 9.0 43200 < th dose independent rect. 19 12
616 293.61 temperature 30.0 4320 < th dose dependent rect. 16 15
626 293.63 wind 5.0 43200 < th dose independent sin 4 NA
629 293.63 temperature 25.0 1440 > th dose dependent rect. 18 1
646 293.66 wind 5.0 43200 > th dose independent sin 4 NA
652 293.67 wind 5.0 43200 > th dose dependent rect. 9 1
657 293.67 radiation 20.0 14400 > th dose dependent rect. 15 17
660 293.68 radiation 10.0 14400 < th dose independent sin 14 NA
663 293.68 temperature 15.0 4320 > th dose dependent rect. 22 1
668 293.68 temperature 25.0 1440 > th dose dependent rect. 2 6
711 293.74 temperature 30.0 4320 < th dose dependent rect. 5 2
738 293.79 radiation 30.0 14400 < th dose independent rect. 15 17
739 293.79 radiation 40.0 14400 > th dose dependent sin 12 NA
763 293.83 radiation 40.0 14400 < th dose independent rect. 15 19
771 293.84 temperature 30.0 4320 < th dose dependent rect. 16 11
814 293.89 temperature 30.0 4320 < th dose dependent rect. 22 3
828 293.90 temperature 15.0 4320 > th dose dependent rect. 22 3
839 293.91 temperature 30.0 4320 < th dose dependent sin 13 NA
847 293.92 radiation 10.0 14400 < th dose dependent rect. 16 1
886 293.96 radiation 10.0 14400 < th dose independent rect. 14 20
951 294.01 temperature 30.0 1440 > th dose dependent rect. 16 22