Os01g0881500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Scarecrow-like 1 (Fragment).
FiT-DB / Search/ Help/ Sample detail
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Os01g0881500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Scarecrow-like 1 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28.21 | 0.25 | 13.3 | 0.00225 | 0.437 | -0.593 | 0.267 | -0.131 | 0.162 | 21.7 | 77 | 744 | -- | -- |
| 27.99 | 0.246 | 13.3 | 0.0163 | 0.444 | -0.618 | 0.252 | -- | 0.171 | 21.5 | 75.73 | 735 | -- | -- |
| 28.16 | 0.247 | 13.3 | 0.0204 | 0.442 | -0.62 | -- | 0.116 | 0.175 | 21.6 | 76 | 740 | -- | -- |
| 28.19 | 0.247 | 13.3 | 0.0106 | 0.44 | -0.615 | -- | -- | 0.172 | 21.7 | 75.89 | 741 | -- | -- |
| 30.95 | 0.259 | 13.3 | -0.0429 | -- | -0.5 | -- | -0.303 | 0.18 | -- | 75.98 | 1625 | -- | -- |
| 34.88 | 0.277 | 13.3 | -0.0552 | 0.189 | -- | -0.021 | -- | 0.147 | 1.19 | -- | -- | -- | -- |
| 34.88 | 0.277 | 13.3 | -0.0544 | 0.189 | -- | -- | -- | 0.147 | 1.13 | -- | -- | -- | -- |
| 30.95 | 0.259 | 13.3 | 0.00584 | -- | -0.527 | -- | -- | 0.193 | -- | 75.88 | 1625 | -- | -- |
| 28.19 | 0.247 | 13.3 | -- | 0.439 | -0.614 | -- | -- | 0.171 | 21.7 | 75.85 | 741 | -- | -- |
| 37.1 | 0.285 | 13.3 | -0.0472 | -- | -- | -- | -- | 0.151 | -- | -- | -- | -- | -- |
| 34.96 | 0.277 | 13.3 | -- | 0.188 | -- | -- | -- | 0.153 | 1.12 | -- | -- | -- | -- |
| 30.95 | 0.259 | 13.3 | -- | -- | -0.527 | -- | -- | 0.193 | -- | 75.87 | 1625 | -- | -- |
| 37.16 | 0.285 | 13.3 | -- | -- | -- | -- | -- | 0.156 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 27.92 | humidity | 80 | 720 | < th | dose independent | rect. | 24 | 19 |
| 4 | 28.02 | humidity | 80 | 1440 | < th | dose independent | rect. | 24 | 15 |
| 19 | 28.19 | humidity | 80 | 1440 | > th | dose independent | rect. | 1 | 14 |
| 23 | 28.21 | humidity | 70 | 720 | > th | dose dependent | rect. | 9 | 15 |
| 35 | 28.27 | temperature | 25 | 90 | > th | dose independent | rect. | 16 | 11 |
| 44 | 28.31 | humidity | 80 | 720 | < th | dose independent | rect. | 9 | 10 |
| 58 | 28.37 | humidity | 80 | 720 | < th | dose independent | sin | 23 | NA |
| 72 | 28.42 | humidity | 80 | 1440 | < th | dose independent | sin | 3 | NA |
| 74 | 28.42 | humidity | 80 | 720 | > th | dose independent | rect. | 10 | 9 |
| 81 | 28.44 | humidity | 70 | 1440 | > th | dose dependent | rect. | 10 | 4 |
| 85 | 28.46 | humidity | 80 | 720 | > th | dose independent | sin | 22 | NA |
| 92 | 28.47 | humidity | 80 | 720 | > th | dose independent | rect. | 3 | 16 |
| 93 | 28.47 | humidity | 70 | 720 | > th | dose dependent | sin | 20 | NA |
| 108 | 28.52 | humidity | 80 | 720 | > th | dose independent | rect. | 9 | 13 |
| 128 | 28.57 | temperature | 25 | 90 | < th | dose independent | rect. | 12 | 16 |
| 132 | 28.59 | humidity | 80 | 1440 | > th | dose independent | sin | 3 | NA |
| 150 | 28.61 | humidity | 80 | 720 | > th | dose independent | rect. | 3 | 19 |
| 171 | 28.65 | humidity | 80 | 720 | > th | dose independent | rect. | 9 | 15 |
| 176 | 28.67 | humidity | 80 | 720 | > th | dose independent | rect. | 11 | 4 |
| 185 | 28.68 | humidity | 80 | 720 | > th | dose independent | rect. | 1 | 21 |
| 191 | 28.69 | humidity | 80 | 720 | < th | dose independent | rect. | 9 | 23 |
| 199 | 28.71 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 238 | 28.77 | temperature | 25 | 720 | > th | dose dependent | rect. | 13 | 10 |
| 247 | 28.78 | humidity | 80 | 720 | < th | dose independent | rect. | 13 | 23 |
| 253 | 28.79 | humidity | 80 | 720 | > th | dose independent | rect. | 21 | 22 |
| 257 | 28.80 | humidity | 80 | 720 | < th | dose independent | rect. | 7 | 21 |
| 276 | 28.83 | radiation | 1 | 720 | > th | dose independent | rect. | 9 | 10 |
| 295 | 28.84 | humidity | 80 | 720 | < th | dose independent | rect. | 9 | 19 |
| 296 | 28.84 | humidity | 80 | 720 | > th | dose independent | rect. | 23 | 20 |
| 299 | 28.84 | humidity | 80 | 720 | > th | dose independent | rect. | 1 | 23 |
| 305 | 28.85 | humidity | 80 | 720 | < th | dose independent | no | NA | NA |
| 317 | 28.86 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 326 | 28.86 | humidity | 80 | 720 | > th | dose independent | rect. | 23 | 23 |
| 327 | 28.86 | humidity | 80 | 720 | < th | dose independent | rect. | 11 | 23 |
| 328 | 28.86 | temperature | 25 | 270 | > th | dose dependent | sin | 13 | NA |
| 354 | 28.89 | humidity | 80 | 720 | > th | dose independent | rect. | 10 | 22 |
| 364 | 28.90 | temperature | 25 | 10 | < th | dose independent | rect. | 13 | 13 |
| 402 | 28.95 | temperature | 25 | 90 | > th | dose independent | sin | 15 | NA |
| 418 | 28.96 | temperature | 25 | 720 | > th | dose dependent | sin | 16 | NA |
| 469 | 29.00 | humidity | 50 | 720 | > th | dose dependent | rect. | 10 | 21 |
| 496 | 29.03 | temperature | 25 | 90 | < th | dose independent | sin | 15 | NA |
| 522 | 29.05 | humidity | 80 | 720 | < th | dose independent | rect. | 15 | 23 |
| 572 | 29.09 | humidity | 70 | 720 | > th | dose independent | rect. | 13 | 18 |
| 579 | 29.09 | humidity | 70 | 720 | > th | dose dependent | rect. | 3 | 21 |
| 580 | 29.09 | humidity | 90 | 720 | < th | dose dependent | rect. | 13 | 23 |
| 590 | 29.10 | radiation | 10 | 720 | < th | dose dependent | rect. | 14 | 10 |
| 632 | 29.14 | humidity | 80 | 720 | > th | dose independent | no | NA | NA |
| 653 | 29.16 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 678 | 29.17 | radiation | 20 | 720 | < th | dose dependent | rect. | 13 | 4 |
| 715 | 29.20 | temperature | 25 | 10 | > th | dose independent | rect. | 17 | 8 |
| 749 | 29.22 | humidity | 70 | 720 | > th | dose independent | rect. | 13 | 3 |
| 754 | 29.22 | humidity | 80 | 720 | > th | dose independent | rect. | 6 | 23 |
| 820 | 29.26 | humidity | 90 | 720 | < th | dose dependent | rect. | 9 | 21 |
| 838 | 29.27 | humidity | 90 | 1440 | < th | dose dependent | rect. | 1 | 14 |
| 871 | 29.29 | humidity | 80 | 720 | > th | dose independent | rect. | 17 | 23 |
| 880 | 29.30 | radiation | 1 | 720 | > th | dose independent | sin | 18 | NA |
| 936 | 29.32 | humidity | 90 | 720 | < th | dose dependent | rect. | 24 | 21 |
| 937 | 29.32 | humidity | 90 | 720 | < th | dose dependent | rect. | 22 | 22 |
| 971 | 29.34 | humidity | 80 | 720 | > th | dose independent | rect. | 13 | 23 |