Os03g0193000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : GRAS transcription factor domain containing protein.
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Os03g0193000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : GRAS transcription factor domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25.58 | 0.238 | 11.5 | 1.28 | 0.387 | -0.763 | -0.252 | 0.63 | 0.422 | 15.7 | 10.99 | 352 | -- | -- |
| 25.82 | 0.237 | 11.5 | 1.18 | 0.388 | -0.744 | -0.134 | -- | 0.396 | 15.6 | 6.284 | 342 | -- | -- |
| 25.74 | 0.236 | 11.5 | 1.25 | 0.389 | -0.762 | -- | 0.461 | 0.415 | 15.5 | 6.326 | 339 | -- | -- |
| 25.87 | 0.237 | 11.5 | 1.18 | 0.39 | -0.754 | -- | -- | 0.394 | 15.5 | 1.847 | 345 | -- | -- |
| 28.04 | 0.247 | 11.5 | 1.43 | -- | -0.563 | -- | 0.824 | 0.451 | -- | 14.1 | 2488 | -- | -- |
| 31.95 | 0.265 | 11.5 | 1.02 | 0.222 | -- | -0.0994 | -- | 0.286 | 14 | -- | -- | -- | -- |
| 31.98 | 0.265 | 11.5 | 1.01 | 0.221 | -- | -- | -- | 0.285 | 13.8 | -- | -- | -- | -- |
| 28.81 | 0.25 | 11.5 | 1.18 | -- | -0.607 | -- | -- | 0.385 | -- | -1.128 | 1082 | -- | -- |
| 58.6 | 0.357 | 11.5 | -- | 0.241 | -0.193 | -- | -- | 0.196 | 14.4 | -9.102 | 310 | -- | -- |
| 34.94 | 0.276 | 11.5 | 1 | -- | -- | -- | -- | 0.28 | -- | -- | -- | -- | -- |
| 59.04 | 0.359 | 11.5 | -- | 0.203 | -- | -- | -- | 0.173 | 13.7 | -- | -- | -- | -- |
| 61.23 | 0.364 | 11.5 | -- | -- | -0.131 | -- | -- | 0.186 | -- | 3.702 | 950 | -- | -- |
| 61.54 | 0.366 | 11.5 | -- | -- | -- | -- | -- | 0.169 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.07 | humidity | 80 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 5 | 24.21 | humidity | 70 | 14400 | > th | dose dependent | rect. | 20 | 12 |
| 10 | 24.26 | humidity | 70 | 14400 | > th | dose dependent | rect. | 18 | 14 |
| 12 | 24.28 | humidity | 70 | 14400 | > th | dose dependent | sin | 10 | NA |
| 23 | 24.34 | humidity | 70 | 14400 | > th | dose dependent | rect. | 24 | 9 |
| 35 | 24.39 | temperature | 10 | 720 | > th | dose dependent | rect. | 22 | 14 |
| 58 | 24.49 | humidity | 80 | 14400 | > th | dose dependent | rect. | 4 | 4 |
| 84 | 24.56 | humidity | 50 | 14400 | > th | dose dependent | rect. | 20 | 7 |
| 120 | 24.63 | temperature | 10 | 720 | > th | dose dependent | sin | 7 | NA |
| 171 | 24.73 | temperature | 30 | 720 | < th | dose dependent | sin | 6 | NA |
| 192 | 24.76 | humidity | 80 | 14400 | > th | dose independent | rect. | 16 | 16 |
| 193 | 24.76 | humidity | 80 | 14400 | < th | dose independent | rect. | 15 | 17 |
| 214 | 24.79 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 7 |
| 229 | 24.80 | temperature | 30 | 720 | < th | dose dependent | rect. | 21 | 16 |
| 240 | 24.82 | humidity | 80 | 14400 | > th | dose independent | rect. | 17 | 20 |
| 277 | 24.86 | humidity | 80 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 322 | 24.91 | wind | 3 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 323 | 24.91 | humidity | 80 | 14400 | < th | dose independent | rect. | 16 | 21 |
| 363 | 24.95 | humidity | 80 | 14400 | < th | dose independent | rect. | 16 | 13 |
| 427 | 25.00 | humidity | 80 | 14400 | > th | dose independent | rect. | 16 | 11 |
| 439 | 25.01 | wind | 3 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 486 | 25.04 | humidity | 80 | 14400 | > th | dose independent | rect. | 17 | 3 |
| 511 | 25.05 | humidity | 80 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 526 | 25.06 | humidity | 80 | 14400 | < th | dose independent | rect. | 22 | 22 |
| 603 | 25.11 | humidity | 80 | 14400 | > th | dose independent | rect. | 22 | 23 |
| 653 | 25.14 | humidity | 80 | 14400 | < th | dose independent | sin | 14 | NA |
| 666 | 25.15 | humidity | 80 | 14400 | < th | dose independent | no | NA | NA |
| 694 | 25.16 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 12 |
| 700 | 25.17 | humidity | 80 | 14400 | > th | dose independent | sin | 15 | NA |
| 717 | 25.18 | humidity | 80 | 14400 | > th | dose independent | no | NA | NA |
| 738 | 25.19 | humidity | 80 | 14400 | < th | dose independent | rect. | 1 | 23 |
| 768 | 25.20 | temperature | 15 | 270 | > th | dose dependent | rect. | 23 | 22 |
| 777 | 25.21 | humidity | 80 | 14400 | > th | dose independent | rect. | 1 | 23 |
| 778 | 25.21 | humidity | 80 | 14400 | > th | dose independent | rect. | 4 | 23 |
| 794 | 25.22 | humidity | 70 | 14400 | > th | dose dependent | no | NA | NA |
| 887 | 25.26 | humidity | 70 | 14400 | > th | dose dependent | rect. | 6 | 23 |
| 991 | 25.32 | humidity | 80 | 14400 | > th | dose independent | sin | 5 | NA |