Os02g0662700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Scl1 protein (Fragment).
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Os02g0662700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Scl1 protein (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 45.91 | 0.318 | 11.4 | 0.249 | 1.69 | 1.22 | 0.214 | 0.747 | 0.022 | 5.34 | 25.6 | 218 | -- | -- |
| 46.6 | 0.318 | 11.4 | 0.369 | 1.69 | 1.16 | 0.433 | -- | 0.0501 | 5.32 | 25.72 | 230 | -- | -- |
| 46.01 | 0.316 | 11.4 | 0.233 | 1.69 | 1.23 | -- | 0.848 | 0.0178 | 5.34 | 25.6 | 218 | -- | -- |
| 47.04 | 0.319 | 11.4 | 0.369 | 1.69 | 1.15 | -- | -- | 0.0491 | 5.32 | 25.76 | 228 | -- | -- |
| 140.77 | 0.553 | 11.3 | 0.739 | -- | 2.57 | -- | -0.378 | 0.276 | -- | 31.96 | 268 | -- | -- |
| 66.2 | 0.381 | 11.4 | 0.0713 | 1.89 | -- | 0.415 | -- | -0.199 | 5.15 | -- | -- | -- | -- |
| 66.64 | 0.382 | 11.4 | 0.0711 | 1.9 | -- | -- | -- | -0.201 | 5.15 | -- | -- | -- | -- |
| 140.01 | 0.551 | 11.3 | 0.722 | -- | 2.59 | -- | -- | 0.278 | -- | 31.43 | 271 | -- | -- |
| 50.26 | 0.33 | 11.4 | -- | 1.72 | 1.01 | -- | -- | -0.0212 | 5.31 | 25.78 | 206 | -- | -- |
| 254.97 | 0.746 | 11.4 | 0.138 | -- | -- | -- | -- | -0.153 | -- | -- | -- | -- | -- |
| 66.77 | 0.382 | 11.4 | -- | 1.9 | -- | -- | -- | -0.208 | 5.14 | -- | -- | -- | -- |
| 153.16 | 0.576 | 11.4 | -- | -- | 2.53 | -- | -- | 0.115 | -- | 36.47 | 268 | -- | -- |
| 255.47 | 0.746 | 11.4 | -- | -- | -- | -- | -- | -0.168 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 45.08 | temperature | 25 | 270 | < th | dose dependent | rect. | 7 | 22 |
| 6 | 45.67 | temperature | 25 | 270 | < th | dose dependent | rect. | 16 | 21 |
| 11 | 45.72 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 18 |
| 14 | 45.81 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 17 |
| 22 | 45.90 | temperature | 25 | 270 | < th | dose dependent | rect. | 1 | 23 |
| 37 | 46.05 | temperature | 25 | 270 | < th | dose dependent | no | NA | NA |
| 288 | 48.42 | temperature | 25 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 423 | 49.12 | temperature | 25 | 720 | < th | dose dependent | sin | 16 | NA |
| 471 | 49.41 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 487 | 49.51 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 498 | 49.55 | temperature | 25 | 720 | < th | dose dependent | rect. | 16 | 11 |
| 514 | 49.61 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 11 |
| 534 | 49.70 | temperature | 25 | 720 | < th | dose dependent | rect. | 13 | 15 |
| 560 | 49.80 | temperature | 10 | 720 | > th | dose dependent | rect. | 20 | 6 |
| 595 | 49.90 | temperature | 25 | 270 | < th | dose dependent | sin | 11 | NA |
| 605 | 49.94 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 11 |
| 674 | 50.12 | temperature | 25 | 1440 | < th | dose dependent | rect. | 19 | 16 |
| 680 | 50.13 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 17 |
| 715 | 50.19 | temperature | 25 | 1440 | < th | dose dependent | rect. | 5 | 6 |
| 956 | 50.58 | temperature | 25 | 1440 | < th | dose dependent | sin | 10 | NA |