Os10g0551200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Scl1 protein (Fragment).
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Os10g0551200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Scl1 protein (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 78.82 | 0.417 | 11.7 | 2.02 | 0.549 | 1.31 | 0.387 | 0.316 | 0.548 | 1.96 | 23 | 1457 | -- | -- |
| 78.98 | 0.414 | 11.7 | 2.1 | 0.557 | 1.31 | 0.384 | -- | 0.546 | 1.94 | 22.9 | 1454 | -- | -- |
| 79.16 | 0.414 | 11.7 | 2 | 0.533 | 1.32 | -- | 0.345 | 0.535 | 1.96 | 22.89 | 1512 | -- | -- |
| 79.44 | 0.415 | 11.7 | 2.11 | 0.534 | 1.33 | -- | -- | 0.563 | 1.93 | 22.9 | 1501 | -- | -- |
| 94.97 | 0.454 | 11.7 | 2.02 | -- | 1.31 | -- | 0.363 | 0.542 | -- | 22.9 | 1668 | -- | -- |
| 153.87 | 0.582 | 11.8 | 1.65 | 0.479 | -- | 0.332 | -- | 0.0625 | 1.8 | -- | -- | -- | -- |
| 154.3 | 0.582 | 11.8 | 1.64 | 0.479 | -- | -- | -- | 0.0606 | 1.81 | -- | -- | -- | -- |
| 95.25 | 0.455 | 11.7 | 2.15 | -- | 1.31 | -- | -- | 0.576 | -- | 22.88 | 1670 | -- | -- |
| 187.87 | 0.638 | 11.8 | -- | 0.695 | 0.918 | -- | -- | 0.201 | 0.998 | 22.49 | 887 | -- | -- |
| 168.23 | 0.606 | 11.8 | 1.66 | -- | -- | -- | -- | 0.0715 | -- | -- | -- | -- | -- |
| 225.18 | 0.702 | 11.9 | -- | 0.51 | -- | -- | -- | -0.122 | 1.9 | -- | -- | -- | -- |
| 207.18 | 0.67 | 11.8 | -- | -- | 0.857 | -- | -- | 0.181 | -- | 22.9 | 1545 | -- | -- |
| 240.88 | 0.724 | 11.9 | -- | -- | -- | -- | -- | -0.113 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 73.64 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 5 | 75.55 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 23 |
| 18 | 78.75 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 11 |
| 29 | 79.04 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 51 | 79.49 | temperature | 20 | 1440 | > th | dose dependent | sin | 12 | NA |
| 71 | 79.99 | temperature | 30 | 1440 | < th | dose dependent | rect. | 16 | 13 |
| 78 | 80.11 | temperature | 30 | 270 | < th | dose dependent | rect. | 14 | 23 |
| 89 | 80.19 | temperature | 30 | 720 | < th | dose dependent | rect. | 16 | 20 |
| 117 | 80.42 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 119 | 80.44 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 131 | 80.60 | temperature | 15 | 10 | > th | dose dependent | no | NA | NA |
| 137 | 80.67 | temperature | 30 | 1440 | < th | dose dependent | sin | 14 | NA |
| 181 | 81.03 | temperature | 15 | 90 | > th | dose dependent | no | NA | NA |
| 212 | 81.19 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 6 |
| 216 | 81.20 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 5 |
| 230 | 81.27 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 1 |
| 302 | 81.63 | temperature | 15 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 563 | 82.73 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 642 | 82.96 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 685 | 83.08 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 729 | 83.24 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 23 |
| 772 | 83.40 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 839 | 83.60 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 23 |
| 870 | 83.67 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 969 | 83.92 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 23 |
| 987 | 83.97 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |