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Os04g0555000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : GRAS transcription factor domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12 (0.0192) R2 : 0.796
β1 : 0.804 (0.0705) R2dD : 0.0603 R2D : 0.0571
β2 : 1.88 (0.0469) R2dC : 0.721 R2C : 0.731
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.208 (0.0411) R2dN8 : 0.0153 R2N8 : 0.0058
σ : 0.362
deviance : 59.72
__
_____
C
peak time of C : 2.21
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
43.64 0.31 12 0.886 1.39 0.602 0.681 -1.46 0.231 3.43 0.78 15 -- --
51.89 0.335 12 0.898 1.47 0.467 -0.702 -- 0.255 2.9 1.95 55 -- --
44.57 0.311 12 0.873 1.39 0.609 -- -1.17 0.221 3.45 0.7803 17 -- --
53.25 0.34 12 0.841 1.34 0.603 -- -- 0.219 3.28 1.849 55 -- --
64.12 0.373 12 0.863 -- 1.59 -- -1.31 0.231 -- 1.403 314 -- --
56.71 0.353 12 0.778 1.88 -- -0.902 -- 0.203 2.15 -- -- -- --
59.72 0.362 12 0.804 1.88 -- -- -- 0.208 2.21 -- -- -- --
67.41 0.382 12 0.927 -- 1.55 -- -- 0.249 -- 1.183 317 -- --
71.14 0.393 12 -- 1.35 0.595 -- -- 0.153 3.23 2.973 55 -- --
270.84 0.769 12 0.883 -- -- -- -- 0.253 -- -- -- -- --
76.74 0.41 12 -- 1.9 -- -- -- 0.118 2.22 -- -- -- --
90.22 0.442 12 -- -- 1.54 -- -- 0.168 -- 1.627 314 -- --
291.39 0.797 12 -- -- -- -- -- 0.155 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 43.03 radiation 1.0 10 < th dose dependent rect. 23 23
2 43.33 wind 1.0 720 > th dose independent rect. 7 13
4 43.58 radiation 1.0 10 < th dose dependent rect. 15 21
8 43.72 radiation 1.0 10 < th dose dependent rect. 15 16
10 43.74 wind 1.0 720 > th dose independent rect. 8 11
19 43.75 temperature 10.0 10 > th dose dependent rect. 12 14
20 43.81 radiation 1.0 10 < th dose dependent rect. 11 20
24 43.82 radiation 1.0 30 > th dose independent sin 23 NA
27 43.82 radiation 1.0 10 < th dose dependent rect. 17 23
28 43.83 radiation 1.0 10 < th dose dependent no NA NA
37 43.89 temperature 10.0 90 > th dose dependent rect. 12 14
42 43.93 radiation 1.0 10 < th dose dependent rect. 2 22
48 43.98 temperature 30.0 90 < th dose dependent rect. 15 14
76 44.13 radiation 1.0 30 < th dose dependent rect. 11 9
92 44.15 temperature 10.0 270 > th dose dependent rect. 10 14
121 44.25 radiation 1.0 10 < th dose dependent sin 22 NA
123 44.26 radiation 1.0 30 < th dose dependent rect. 13 7
136 44.36 radiation 1.0 30 < th dose dependent rect. 15 5
150 44.46 radiation 1.0 30 < th dose independent rect. 23 23
168 44.60 temperature 30.0 10 < th dose dependent rect. 17 13
173 44.63 temperature 30.0 10 < th dose dependent rect. 15 15
190 44.79 radiation 1.0 10 < th dose dependent rect. 4 16
192 44.83 wind 1.0 90 > th dose independent rect. 17 12
201 44.93 radiation 20.0 720 < th dose independent rect. 20 11
205 44.98 wind 1.0 270 > th dose independent rect. 15 14
208 45.01 radiation 1.0 30 < th dose independent rect. 15 21
213 45.02 radiation 1.0 30 < th dose independent rect. 11 9
219 45.06 radiation 1.0 90 < th dose independent rect. 15 5
222 45.08 radiation 1.0 30 > th dose independent rect. 5 13
235 45.10 radiation 1.0 30 < th dose independent rect. 15 17
247 45.14 radiation 1.0 30 < th dose independent rect. 15 15
255 45.16 radiation 1.0 30 > th dose independent no NA NA
256 45.16 radiation 1.0 30 < th dose independent no NA NA
293 45.16 radiation 1.0 30 < th dose independent rect. 11 21
315 45.16 radiation 1.0 30 < th dose independent rect. 7 23
321 45.16 radiation 1.0 30 < th dose independent rect. 17 23
325 45.18 wind 1.0 720 > th dose independent rect. 7 6
330 45.20 radiation 1.0 30 < th dose independent rect. 11 19
354 45.26 temperature 10.0 720 > th dose independent rect. 20 11
355 45.26 temperature 30.0 720 < th dose independent rect. 20 11
356 45.26 humidity 50.0 720 > th dose independent rect. 20 11
358 45.26 atmosphere 995.0 720 > th dose independent rect. 20 11
359 45.26 radiation 40.0 720 < th dose independent rect. 20 11
360 45.26 temperature 10.0 720 > th dose independent rect. 7 13
361 45.26 atmosphere 1015.0 720 < th dose independent rect. 7 13
370 45.26 radiation 1.0 720 < th dose dependent rect. 23 6
372 45.27 humidity 60.0 720 > th dose independent rect. 19 13
373 45.27 radiation 1.0 30 > th dose independent rect. 9 23
379 45.28 temperature 10.0 720 > th dose dependent rect. 11 5
384 45.30 temperature 10.0 720 > th dose independent rect. 8 11
385 45.30 atmosphere 1015.0 720 < th dose independent rect. 8 11
386 45.30 temperature 10.0 720 > th dose independent rect. 19 13
387 45.30 temperature 30.0 720 < th dose independent rect. 19 13
389 45.30 atmosphere 995.0 720 > th dose independent rect. 19 13
399 45.34 atmosphere 995.0 270 > th dose independent rect. 15 13
400 45.34 wind 1.0 720 > th dose independent rect. 8 19
401 45.35 precipitation 0.1 270 < th dose independent rect. 15 13
402 45.35 precipitation 0.1 270 < th dose dependent rect. 15 13
407 45.38 temperature 15.0 720 > th dose independent rect. 11 6
408 45.38 temperature 10.0 270 > th dose independent rect. 4 11
409 45.38 atmosphere 1015.0 270 < th dose independent rect. 4 11
411 45.38 temperature 10.0 270 > th dose independent rect. 15 13
413 45.39 radiation 40.0 720 < th dose independent rect. 19 13
415 45.41 precipitation 0.1 270 < th dose independent rect. 4 11
416 45.41 temperature 20.0 270 > th dose independent rect. 11 13
417 45.41 radiation 1.0 30 < th dose independent rect. 2 22
420 45.41 precipitation 0.1 270 < th dose dependent rect. 4 11
423 45.42 wind 9.0 720 < th dose independent rect. 20 11
428 45.43 atmosphere 995.0 720 > th dose independent rect. 17 18
431 45.47 wind 9.0 720 < th dose independent rect. 19 13
434 45.49 temperature 20.0 10 > th dose independent rect. 12 14
439 45.53 temperature 10.0 30 > th dose dependent rect. 20 22
450 45.57 radiation 1.0 30 < th dose independent sin 22 NA
451 45.57 precipitation 0.1 720 < th dose independent rect. 20 11
452 45.57 radiation 40.0 720 < th dose dependent rect. 20 11
453 45.57 precipitation 0.1 720 < th dose dependent rect. 20 11
457 45.58 wind 9.0 270 < th dose independent rect. 4 11
464 45.59 atmosphere 1015.0 720 < th dose independent rect. 11 6
466 45.59 temperature 10.0 720 > th dose independent rect. 17 18
469 45.61 wind 7.0 720 < th dose independent rect. 23 6
476 45.62 radiation 40.0 270 < th dose independent rect. 15 13
477 45.62 wind 9.0 720 < th dose independent rect. 17 18
489 45.66 humidity 50.0 270 > th dose independent rect. 4 11
498 45.67 temperature 10.0 720 > th dose independent rect. 23 6
499 45.67 temperature 30.0 720 < th dose independent rect. 23 6
500 45.67 humidity 50.0 720 > th dose independent rect. 23 6
503 45.67 atmosphere 995.0 720 > th dose independent rect. 23 6
504 45.67 radiation 20.0 720 < th dose independent rect. 23 6
509 45.67 temperature 10.0 720 > th dose independent rect. 5 18
512 45.67 radiation 40.0 720 < th dose dependent rect. 23 6
516 45.68 radiation 20.0 720 < th dose dependent rect. 23 6
518 45.69 atmosphere 995.0 270 > th dose independent rect. 4 11
540 45.73 radiation 1.0 720 < th dose independent rect. 23 6
676 45.87 atmosphere 995.0 720 > th dose independent rect. 7 13
687 45.88 radiation 1.0 720 < th dose dependent rect. 23 20
688 45.89 atmosphere 995.0 720 > th dose independent rect. 8 11
691 45.89 radiation 1.0 30 < th dose dependent rect. 21 23
709 45.95 temperature 30.0 10 < th dose dependent rect. 12 18
715 45.98 wind 9.0 270 < th dose independent rect. 15 13
724 46.00 precipitation 0.1 720 < th dose independent rect. 7 13
726 46.00 precipitation 0.1 720 < th dose dependent rect. 7 13
729 46.03 atmosphere 995.0 720 > th dose independent rect. 16 4
731 46.04 wind 1.0 720 > th dose independent rect. 15 5
732 46.04 precipitation 0.1 720 < th dose independent rect. 23 6
736 46.04 precipitation 0.1 720 < th dose dependent rect. 23 6
741 46.06 atmosphere 995.0 720 > th dose independent rect. 17 10
750 46.09 precipitation 0.1 720 < th dose independent rect. 8 11
754 46.09 precipitation 0.1 720 < th dose dependent rect. 8 11
756 46.10 wind 9.0 720 < th dose independent rect. 11 6
760 46.11 radiation 1.0 30 < th dose dependent rect. 2 18
762 46.12 precipitation 0.1 720 < th dose independent rect. 11 6
766 46.12 precipitation 0.1 720 < th dose dependent rect. 11 6
770 46.13 radiation 20.0 90 < th dose dependent rect. 15 14
773 46.15 temperature 10.0 720 > th dose independent rect. 15 5
774 46.15 atmosphere 1015.0 720 < th dose independent rect. 15 5
777 46.15 temperature 10.0 720 > th dose independent rect. 20 19
787 46.19 temperature 15.0 720 > th dose independent rect. 13 10
806 46.24 wind 9.0 720 < th dose independent rect. 3 5
808 46.24 temperature 10.0 720 > th dose independent rect. 3 5
809 46.24 temperature 30.0 720 < th dose independent rect. 3 5
810 46.24 humidity 50.0 720 > th dose independent rect. 3 5
812 46.24 atmosphere 995.0 720 > th dose independent rect. 3 5
814 46.24 temperature 10.0 720 > th dose independent rect. 8 19
843 46.33 radiation 40.0 720 < th dose independent rect. 3 5
845 46.33 humidity 50.0 720 > th dose independent rect. 17 18
853 46.35 atmosphere 995.0 720 > th dose independent rect. 17 2
898 46.40 radiation 40.0 720 < th dose independent rect. 16 4
900 46.40 atmosphere 1015.0 720 < th dose independent rect. 5 18
903 46.40 radiation 1.0 30 > th dose independent rect. 17 23
904 46.40 temperature 30.0 10 < th dose dependent sin 15 NA
931 46.44 wind 9.0 720 < th dose independent rect. 17 10
944 46.45 wind 9.0 720 < th dose independent rect. 16 4
945 46.45 atmosphere 1015.0 720 < th dose independent rect. 1 10
946 46.45 precipitation 0.1 720 < th dose independent rect. 20 19
948 46.45 precipitation 0.1 720 < th dose dependent rect. 20 19
963 46.47 atmosphere 1015.0 720 < th dose independent rect. 4 4
964 46.47 temperature 10.0 720 > th dose independent rect. 17 10
965 46.47 radiation 30.0 720 < th dose independent rect. 17 10
967 46.47 temperature 10.0 720 > th dose independent rect. 3 14
978 46.49 wind 9.0 720 < th dose independent rect. 20 19