BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0555000 Os04g0555000|AK100757
(711 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0555000 GRAS transcription factor domain containing pr... 972 0.0
Os02g0663100 GRAS transcription factor domain containing pr... 619 e-177
Os02g0662700 Similar to Scl1 protein (Fragment) 560 e-159
Os10g0551200 Similar to Scl1 protein (Fragment) 312 6e-85
Os03g0103400 GRAS transcription factor domain containing pr... 295 8e-80
Os11g0507300 103 5e-22
Os03g0723000 GRAS transcription factor domain containing pr... 102 1e-21
Os01g0646300 Similar to RGA2 protein 93 6e-19
Os03g0263300 87 3e-17
Os03g0193000 GRAS transcription factor domain containing pr... 86 7e-17
Os11g0124300 Similar to SCARECROW 84 4e-16
Os07g0583600 Chitin-inducible gibberellin-responsive protein 81 2e-15
Os05g0574900 GRAS transcription factor domain containing pr... 80 4e-15
Os12g0122000 SCARECROW 71 3e-12
>Os04g0555000 GRAS transcription factor domain containing protein
Length = 711
Score = 972 bits (2514), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 519/711 (72%), Positives = 519/711 (72%)
Query: 1 MRAAPFSADGNGAAELAGSIAALLWPEDKXXXXXXXXXSLLVEPRSVLDCRXXXXXXXXX 60
MRAAPFSADGNGAAELAGSIAALLWPEDK SLLVEPRSVLDCR
Sbjct: 1 MRAAPFSADGNGAAELAGSIAALLWPEDKGGGGGGGGGSLLVEPRSVLDCRGSPSPPNST 60
Query: 61 XXXXXXXXXXAADSISTGXXXXXXXXXXXXXXTRWAAXXXXXXXXXXXXXXXXXALDVGF 120
AADSISTG TRWAA ALDVGF
Sbjct: 61 STLSSSHGSGAADSISTGVAAVSESSAAAAEATRWAAPGEHGGGGGGELPPIPGALDVGF 120
Query: 121 VAEESWDAMLGDXXXXXGQEQTFLNWIMAAPGDMEPQAPGLSQQQLLANAAGFGFPLQHH 180
VAEESWDAMLGD GQEQTFLNWIMAAPGDMEPQAPGLSQQQLLANAAGFGFPLQHH
Sbjct: 121 VAEESWDAMLGDAAAAAGQEQTFLNWIMAAPGDMEPQAPGLSQQQLLANAAGFGFPLQHH 180
Query: 181 PGGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFGLLSXXXXXXXXXXXXXXFHNGAD 240
PGGV FGLLS FHNGAD
Sbjct: 181 PGGVSSPAALASDLSSSGGRSLTSSSGSNSKATSAFGLLSPEAALQPPPATTAPFHNGAD 240
Query: 241 MKXXXXXXXXXXXXXNQHQPTPASTLFMPFPSFSDHXXXXXXXXXXKRHHSVPDNLFLLH 300
MK NQHQPTPASTLFMPFPSFSDH KRHHSVPDNLFLLH
Sbjct: 241 MKPPLLGLPSPTLLLNQHQPTPASTLFMPFPSFSDHQQQPLLQPPPKRHHSVPDNLFLLH 300
Query: 301 NXXXXXXXXXXXCLPFPTLHSAVPFQLQPSMQHPRNAMKSTXXXXXXXXXXXXXXXXXXX 360
N CLPFPTLHSAVPFQLQPSMQHPRNAMKST
Sbjct: 301 NQPQPPPPAPAQCLPFPTLHSAVPFQLQPSMQHPRNAMKSTAAAAAAQQQHLLDELAAAA 360
Query: 361 KATEVGNSIGAREILARLNQQLPPIGKPFLRSASYXXXXXXXXXXXXXXXXTRLTSPLDV 420
KATEVGNSIGAREILARLNQQLPPIGKPFLRSASY TRLTSPLDV
Sbjct: 361 KATEVGNSIGAREILARLNQQLPPIGKPFLRSASYLKDALLLALADGHHAATRLTSPLDV 420
Query: 421 ALKLTAYKSFSDLSPVLQFANFTVTQALLDEIASTTASCIRVIDFDLGVGGQWASFLQEL 480
ALKLTAYKSFSDLSPVLQFANFTVTQALLDEIASTTASCIRVIDFDLGVGGQWASFLQEL
Sbjct: 421 ALKLTAYKSFSDLSPVLQFANFTVTQALLDEIASTTASCIRVIDFDLGVGGQWASFLQEL 480
Query: 481 AHRCGSGGVSLPMLKLTAFVSAASHHPLELHLTQDNLSQFAADLGIPFEFNAINLDAFDP 540
AHRCGSGGVSLPMLKLTAFVSAASHHPLELHLTQDNLSQFAADLGIPFEFNAINLDAFDP
Sbjct: 481 AHRCGSGGVSLPMLKLTAFVSAASHHPLELHLTQDNLSQFAADLGIPFEFNAINLDAFDP 540
Query: 541 MELIAPTADEVVAVSLPVGCSARTPLPAMLQLVKQLAPKIVVAIDYGSDRSDLPFSQHFX 600
MELIAPTADEVVAVSLPVGCSARTPLPAMLQLVKQLAPKIVVAIDYGSDRSDLPFSQHF
Sbjct: 541 MELIAPTADEVVAVSLPVGCSARTPLPAMLQLVKQLAPKIVVAIDYGSDRSDLPFSQHFL 600
Query: 601 XXXXXXXXXXXXXDAAGTDADAVSKIERFLIQPRVEDAVLGRRRADKAIAWRTVLTSAGF 660
DAAGTDADAVSKIERFLIQPRVEDAVLGRRRADKAIAWRTVLTSAGF
Sbjct: 601 NCLQSCLCLLESLDAAGTDADAVSKIERFLIQPRVEDAVLGRRRADKAIAWRTVLTSAGF 660
Query: 661 APQPLSNLAEAQADCLLKRVQVRGFHVEKRGAGLALYWQRGELVSVSAWRC 711
APQPLSNLAEAQADCLLKRVQVRGFHVEKRGAGLALYWQRGELVSVSAWRC
Sbjct: 661 APQPLSNLAEAQADCLLKRVQVRGFHVEKRGAGLALYWQRGELVSVSAWRC 711
>Os02g0663100 GRAS transcription factor domain containing protein
Length = 715
Score = 619 bits (1596), Expect = e-177, Method: Compositional matrix adjust.
Identities = 378/740 (51%), Positives = 423/740 (57%), Gaps = 54/740 (7%)
Query: 1 MRAAPFSADGNGAAELAGSIAA---LLWPEDKXXXXXXXXXSLLVEPRSVLDCRXXXXXX 57
MRAA F A+ +G +L G L WP K ++VEPRSVLDC
Sbjct: 1 MRAALFGAERSGVVDLGGIGGGNRGLFWPAGKGGL-------VVVEPRSVLDCTRSPSPR 53
Query: 58 XXXXXXXXXXXXXAADSISTGXXXXXXXXXXXXXXTRWAAXXXXXXXXXXXXXXXXX--- 114
ADS TG T+W A
Sbjct: 54 NSTSTLSSSQGGGGADS--TGVAAVSESSAAAAEATKWGAPGEHGGGGGGGGGGGKEDWS 111
Query: 115 ----------ALDVGFVAEESWDAMLGDXXXXX-GQEQTFLNWIMAAPGDMEPQAPGLSQ 163
LDVG V E WD MLG+ GQ+Q+FLNWI+ A GD+E P
Sbjct: 112 SGCELPPIPGTLDVGLVGGEGWDTMLGNAAAAAAGQDQSFLNWIIGAAGDLEQPGP---- 167
Query: 164 QQLLANAAGFGFP--------LQHHPGGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 215
LL NA GFG P L H GV
Sbjct: 168 -PLLDNA-GFGIPAVDPLGFSLDHSLSGVASDLSSSGAHTATGGAGGGKASLG------- 218
Query: 216 FGLLSXXXXXXXXXXXXXXFHNGADMKXXXXXXXXXXXXXNQHQ--PTPASTLFMPFPSF 273
FGL S FH G D K + H P PA+T FMP PSF
Sbjct: 219 FGLFSPEATSLEQPPPPMLFHEGIDTKPPLLGAQPPGLLNHYHHQPPNPAATFFMPHPSF 278
Query: 274 SDHXXXXXXXXXX-KRHHSVPDNLFLLHNXXXXXXXXXXXCLPFPTLHSAVPFQLQPSMQ 332
+H KRHHS+PD+++L N LPF LH++VPFQLQPS
Sbjct: 279 PEHNHQSPLLQPPPKRHHSMPDDIYLARNQLPPAAAAAQG-LPFSPLHASVPFQLQPSPP 337
Query: 333 HPRNAMKSTXXXXXXXXXXXXXXXXXXXKATEVGNSIGAREILARLNQQLPPIGKPFLRS 392
R AMK+T KATE GNS+GAREILARLNQQLPP+GKPFLRS
Sbjct: 338 PIRGAMKTTAAEAAQQQLLDELAAAA--KATEAGNSVGAREILARLNQQLPPLGKPFLRS 395
Query: 393 ASYXXXXXXXXXXXXXXXXTRLTSPLDVALKLTAYKSFSDLSPVLQFANFTVTQALLDEI 452
ASY + +T+PLDVALKL AYKSFSDLSPVLQFANFT TQALLDEI
Sbjct: 396 ASYLREALLLALADSHHGVSSVTTPLDVALKLAAYKSFSDLSPVLQFANFTATQALLDEI 455
Query: 453 ASTTASCIRVIDFDLGVGGQWASFLQELAHRCGSGGVSLPMLKLTAFVSAASHHPLELHL 512
T SCI VIDFDLGVGGQWASFLQELAHR +GGV+LP+LKLTAFVS ASHHPLELHL
Sbjct: 456 GGTATSCIHVIDFDLGVGGQWASFLQELAHRRAAGGVTLPLLKLTAFVSTASHHPLELHL 515
Query: 513 TQDNLSQFAADLGIPFEFNAINLDAFDPMELIAPTADEVVAVSLPVGCSART-PLPAMLQ 571
TQDNLSQFAADLGIPFEFNA++LDAF+P ELI+ T DEVVAVSLPVGCSAR PLPA+L+
Sbjct: 516 TQDNLSQFAADLGIPFEFNAVSLDAFNPGELISSTGDEVVAVSLPVGCSARAPPLPAILR 575
Query: 572 LVKQLAPKIVVAIDYGSDRSDLPFSQHFXXXXXXXXXXXXXXDAAGTDADAVSKIERFLI 631
LVKQL+PKIVVAID+G+DR+DL FSQHF DAAG DAD+ KIERFLI
Sbjct: 576 LVKQLSPKIVVAIDHGADRADLSFSQHFLNCFQSCVFLLDSLDAAGIDADSACKIERFLI 635
Query: 632 QPRVEDAVLGRRRADKAIAWRTVLTSAGFAPQPLSNLAEAQADCLLKRVQVRGFHVEKRG 691
QPRV D VLGR + KAIAWR+V +AGF P P SNLAEAQADCLLKRVQVRGFHVEK G
Sbjct: 636 QPRVHDMVLGRHKVHKAIAWRSVFAAAGFKPVPPSNLAEAQADCLLKRVQVRGFHVEKCG 695
Query: 692 AGLALYWQRGELVSVSAWRC 711
A L LYWQRGELVS+S+WRC
Sbjct: 696 AALTLYWQRGELVSISSWRC 715
>Os02g0662700 Similar to Scl1 protein (Fragment)
Length = 531
Score = 560 bits (1442), Expect = e-159, Method: Compositional matrix adjust.
Identities = 305/501 (60%), Positives = 339/501 (67%), Gaps = 9/501 (1%)
Query: 216 FGLLSXXXXXXXXXXXXXXFHNGADMKXXXXXXXXXXXXXNQHQP---TPASTLFMPFPS 272
FGL S FH G D K N +QP PA+ LFMP P
Sbjct: 35 FGLFSPEATSLEQPPPSMLFHEGIDTKPPLLGAQPQFLL-NHYQPQPPNPAAALFMPLPP 93
Query: 273 FSDHXXXXXXXXX-XKRHHSVPDNLFLLHNXXXXXXXXXXXCLPFPTLHSAVPFQLQPSM 331
F +H KRHH++PD+L+L N P LH PFQL PS
Sbjct: 94 FPEHNHQSPHLQPPLKRHHAIPDDLYLARNQQQSSAVAPGLAYS-PPLHGPAPFQLHPSP 152
Query: 332 QHPRNAMKSTXXXXXXXXXXXXXXXXXXXKATEVGNSIGAREILARLNQQLPPIGKPFLR 391
R AMKST KATE GNS+GAREILARLNQQLP +GKPFLR
Sbjct: 153 PPIRGAMKSTAAEAAQQQLLDELAAAA--KATEAGNSVGAREILARLNQQLPQLGKPFLR 210
Query: 392 SASYXXXXXXXXXXXXXXXXTRLTSPLDVALKLTAYKSFSDLSPVLQFANFTVTQALLDE 451
SASY + +TSPLDVALKL AYKSFSDLSPVLQF NFT TQALLDE
Sbjct: 211 SASYLKEALLLALADSHHGSSGVTSPLDVALKLAAYKSFSDLSPVLQFTNFTATQALLDE 270
Query: 452 IASTTASCIRVIDFDLGVGGQWASFLQELAHRCGSGGVSLPMLKLTAFVSAASHHPLELH 511
I SCI VIDFDLGVGGQWASFLQELAHR G+GG++LP+LKLTAF+S ASHHPLELH
Sbjct: 271 IGGMATSCIHVIDFDLGVGGQWASFLQELAHRRGAGGMALPLLKLTAFMSTASHHPLELH 330
Query: 512 LTQDNLSQFAADLGIPFEFNAINLDAFDPMELIAPTADEVVAVSLPVGCSART-PLPAML 570
LTQDNLSQFAA+L IPFEFNA++LDAF+P ELI+ + DEVVAVSLPVGCSAR PLPA+L
Sbjct: 331 LTQDNLSQFAAELRIPFEFNAVSLDAFNPAELISSSGDEVVAVSLPVGCSARAPPLPAIL 390
Query: 571 QLVKQLAPKIVVAIDYGSDRSDLPFSQHFXXXXXXXXXXXXXXDAAGTDADAVSKIERFL 630
+LVKQL PK+VVAID+G DR+DLPFSQHF DAAG DAD+ KIERFL
Sbjct: 391 RLVKQLCPKVVVAIDHGGDRADLPFSQHFLNCFQSCVFLLDSLDAAGIDADSACKIERFL 450
Query: 631 IQPRVEDAVLGRRRADKAIAWRTVLTSAGFAPQPLSNLAEAQADCLLKRVQVRGFHVEKR 690
IQPRVEDAV+GR +A KAIAWR+V + GF P LSNLAEAQADCLLKRVQVRGFHVEKR
Sbjct: 451 IQPRVEDAVIGRHKAQKAIAWRSVFAATGFKPVQLSNLAEAQADCLLKRVQVRGFHVEKR 510
Query: 691 GAGLALYWQRGELVSVSAWRC 711
GA L LYWQRGELVS+S+WRC
Sbjct: 511 GAALTLYWQRGELVSISSWRC 531
>Os10g0551200 Similar to Scl1 protein (Fragment)
Length = 398
Score = 312 bits (799), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 179/357 (50%), Positives = 220/357 (61%), Gaps = 18/357 (5%)
Query: 366 GNSIGAREILARLNQQLP---PIGKPFLRSASYXXXXXXXXXXXXXXXXT-RLTSPLDVA 421
G++ GAREILARLN +LP G P LRSA Y ++P DV
Sbjct: 49 GDAFGAREILARLNYRLPAAPTAGTPLLRSAFYFKEALRLTLSPTGDAPAPSASTPYDVV 108
Query: 422 LKLTAYKSFSDLSPVLQFANFTVTQALLDEIASTTASCIRVIDFDLGVGGQWASFLQELA 481
+KL AYK+FS++SPVLQFA+ T QA+LDE+ A CI V+DFD+G+G QWAS +QELA
Sbjct: 109 VKLGAYKAFSEVSPVLQFAHLTCVQAVLDELGG--AGCIHVLDFDIGMGEQWASLMQELA 166
Query: 482 HRCGSGGVSLPMLKLTAFVSAASHHPLELHLTQDNLSQFAADLGIPFEFNAINLDAFDPM 541
+ LK+TA VS ASHHPLEL L +NLS FAA+LG+ F F N+D DP
Sbjct: 167 QLRPAAA-----LKVTALVSPASHHPLELQLIHENLSGFAAELGVFFHFTVFNIDTLDPA 221
Query: 542 ELIA-PTADEVVAVSLPVGCSARTPLPAMLQLVKQLAPKIVVAIDYGSDRSDLPFSQHFX 600
EL+A TA + VAV LPVG + PA+L+LVK+L K+VV++D G DRSDLPF+ H
Sbjct: 222 ELLANATAGDAVAVHLPVGPAHAAATPAVLRLVKRLGAKVVVSVDRGCDRSDLPFAAHLF 281
Query: 601 XXXXXXXXXXXXXDAAGTDADAVSKIERFLIQPRVEDAVLGRRRADKAI------AWRTV 654
DA GTD D SKIER+LI P +E V+ RA A+ WR
Sbjct: 282 HSFHSAVYLLESIDAVGTDPDTASKIERYLIHPAIEQCVVASHRAASAMDKAPPPPWRAA 341
Query: 655 LTSAGFAPQPLSNLAEAQADCLLKRVQVRGFHVEKRGAGLALYWQRGELVSVSAWRC 711
+AGFAP + AE+QA+ LL +V VRGF VEKR L LYWQRGELVSVSAWRC
Sbjct: 342 FAAAGFAPVQATTFAESQAESLLSKVHVRGFRVEKRAGSLCLYWQRGELVSVSAWRC 398
>Os03g0103400 GRAS transcription factor domain containing protein
Length = 474
Score = 295 bits (755), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 173/369 (46%), Positives = 223/369 (60%), Gaps = 23/369 (6%)
Query: 361 KATEVGNSIGAREILAR--LNQQLP-PIGKPFLRSASYXXXXXXXX--------XXXXXX 409
K TE G+ + AR ILAR +N +LP P LRSA Y
Sbjct: 111 KLTEAGDVLAARHILARPAINYRLPASAAPPLLRSALYFKDALRRALISDDDSSSSSTPP 170
Query: 410 XXTRLTSPLDVALKLTAYKSFSDLSPVLQFANFTVTQALLDEIASTTASCIRVIDFDLGV 469
P D+ LKLT+YKSFSDLSP+L FA+FT QA+LDE+A + ASCI ++DFD+GV
Sbjct: 171 PPLHEPHPHDLLLKLTSYKSFSDLSPLLHFAHFTCVQAVLDELAPS-ASCIHLLDFDIGV 229
Query: 470 GGQWASFLQELAHRCGSGGVSLPMLKLTAFVSAASHHPLELHLTQDNLSQFAADLGIPFE 529
G QWAS + +LAHR GV+L + L S++SHHPL+L L D LS FAADL +PF
Sbjct: 230 GEQWASLMHDLAHR--HPGVALKVTALNVTASSSSHHPLQLQLIHDTLSTFAADLSVPFR 287
Query: 530 FNAINLDAFDPMELIAPTADEVVA-VSLPVGCSARTPLPAMLQLVKQLAPKIVVAIDYGS 588
F A NLDA D L+A A V LPVG T +P++L LV++L K+VV++D G
Sbjct: 288 FAAFNLDATDLTPLLAVAAATDAIAVHLPVGSVHATAVPSVLHLVRRLGAKLVVSVDRGC 347
Query: 589 DRSDLPFSQHFXXXXXXXXXXXXXXDAAGTDADAVSKIERFLIQPRVEDAVL------GR 642
DR +LPF+ H DA GTD+D +KIERF +QP++++ V G
Sbjct: 348 DRGELPFAAHLLQALRSTVSLLESLDAMGTDSDVAAKIERFWVQPKIQECVRAAVGVGGD 407
Query: 643 RRADKAIAWRTVLTSAGFAPQPLSNLAEAQADCLLKRVQVRGFHVEKRGAGLALYWQRGE 702
+ A A AWR L SAGF P +S++AEAQA+ LLK++ VRGF +E+R L L+WQRGE
Sbjct: 408 KTA--ASAWRATLASAGFVPVQVSSMAEAQAESLLKKLPVRGFRLERRAGSLFLHWQRGE 465
Query: 703 LVSVSAWRC 711
L SVSAWRC
Sbjct: 466 LASVSAWRC 474
>Os11g0507300
Length = 772
Score = 103 bits (257), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 88/303 (29%), Positives = 135/303 (44%), Gaps = 29/303 (9%)
Query: 424 LTAYKSFSDLSPVLQFANFTVTQALLDEIASTTASCIRVIDFDLGVGGQWASFLQELAHR 483
L Y+ P ++FA+FT QA+ + + V+D D+ G QW +FLQ LA R
Sbjct: 484 LKVYQILYQACPYIKFAHFTANQAIFEAFHGEDR--VHVVDLDILQGYQWPAFLQALAAR 541
Query: 484 CGSGGVSLPMLKLTAFVSAASHHPLELHLTQDNLSQFAADLGIPFEFNAINLDAFDPMEL 543
G P L+LT H P + T +L+ AA L +PFEF+A A D +E
Sbjct: 542 PGGP----PTLRLTGV----GHPPAAVRETGRHLASLAASLRVPFEFHAA---AADRLER 590
Query: 544 IAPTA-----DEVVAVSLPVGCSARTP---LPAMLQLVKQLAPKIVVAIDYGSDRSDLPF 595
+ P A E +AV+ V R P LP +L +++ APKI+ ++ + + F
Sbjct: 591 LRPAALHRRVGEALAVN-AVNRLHRVPSSHLPPLLSMIRDQAPKIITLVEQEAAHNGPYF 649
Query: 596 SQHFXXXXXXXXXXXXXXDAA-GTDADAVSKIERFLIQPRVEDAVLGR-----RRADKAI 649
F DA ++ A K+E+ L+ P + + V R ++
Sbjct: 650 LGRFLEALHYYSAIFDSLDATFPAESTARMKVEQCLLAPEIRNVVACEGAERVARHERLE 709
Query: 650 AWRTVLTSAGFAPQPLSNLAEAQADCLLKRVQV-RGFHVEKRGAGLALYWQRGELVSVSA 708
WR ++ GF PLS A Q+ LL G+ + + L L WQ +++ SA
Sbjct: 710 RWRRLMEGRGFEAVPLSAAAVGQSQVLLGLYGAGDGYRLTEDSGCLLLGWQDRAIIAASA 769
Query: 709 WRC 711
WRC
Sbjct: 770 WRC 772
>Os03g0723000 GRAS transcription factor domain containing protein
Length = 578
Score = 102 bits (254), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 95/312 (30%), Positives = 143/312 (45%), Gaps = 44/312 (14%)
Query: 427 YKSFSDLSPVLQFANFTVTQALLDEIASTTASCIRVIDFDLGVGGQWASFLQELAHR--- 483
YK+ +D P +FA+ T QA+L+ A+ A+ I ++DF + G QWA+ LQ LA R
Sbjct: 283 YKTLNDACPYSKFAHLTANQAILE--ATGAATKIHIVDFGIVQGIQWAALLQALATRPEG 340
Query: 484 ----CGSGGVSLPMLKLTAFVSAASHHPLELHLTQDNLSQFAADLGIPFEF-------NA 532
GV P+L S A+ T L FA LG+ FEF +
Sbjct: 341 KPTRIRITGVPSPLLGPQPAASLAA--------TNTRLRDFAKLLGVDFEFVPLLRPVHE 392
Query: 533 INLDAFDPMELIAPTADEVVAVSLPVGC-----SARTPLPAMLQLVKQLAPKIVVAIDYG 587
+N F L+ P DE VAV+ + + + +L+L K L+P +V +Y
Sbjct: 393 LNKSDF----LVEP--DEAVAVNFMLQLYHLLGDSDELVRRVLRLAKSLSPAVVTLGEYE 446
Query: 588 SDRSDLPFSQHFXXXXXXXXXXXXXXDAAGT-DADAVSKIERFLIQPRVEDAVLGRRRAD 646
+ F F D A T D+ ++ER++ R++ AV AD
Sbjct: 447 VSLNRAGFVDRFANALSYYRSLFESLDVAMTRDSPERVRVERWMFGERIQRAVGPEEGAD 506
Query: 647 K------AIAWRTVLTSAGFAPQPLSNLAEAQADCLLKRVQVRGFH--VEKRGAGLALYW 698
+ + W+T++ GF P PLSN A +QAD LL + + VE A L+L W
Sbjct: 507 RTERMAGSSEWQTLMEWCGFEPVPLSNYARSQADLLLWNYDSKYKYSLVELPPAFLSLAW 566
Query: 699 QRGELVSVSAWR 710
++ L++VSAWR
Sbjct: 567 EKRPLLTVSAWR 578
>Os01g0646300 Similar to RGA2 protein
Length = 493
Score = 93.2 bits (230), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 86/297 (28%), Positives = 123/297 (41%), Gaps = 20/297 (6%)
Query: 427 YKSFSDLSPVLQFANFTVTQALLDEIASTTASCIRVIDFDLGVGGQWASFLQELAHRCGS 486
Y F + P L+FA+FT QA+L+ A + VIDF L G QW + +Q LA R G
Sbjct: 156 YHHFYEACPYLKFAHFTANQAILE--AFHGCDHVHVIDFSLMQGLQWPALIQALALRPGG 213
Query: 487 GGVSLPMLKLTAFVSAASHHPLELHLTQDNLSQFAADLGIPFEFNAINLDAFDP----ME 542
P L++T + EL L+ A + + F F + ++ D M
Sbjct: 214 P----PFLRITGIGPPSPTGRDELRDVGLRLADLARSVRVRFSFRGVAANSLDEVRPWML 269
Query: 543 LIAPTA----DEVVAVSLPVGCSA-RTPLPAMLQLVKQLAPKIVVAIDYGSDRSDLPFSQ 597
IAP + V+ + +G A + P+ A+L V + PKI I+ +D + F
Sbjct: 270 QIAPGEAVAFNSVLQLHRLLGDPADQAPIDAVLDCVASVRPKIFTVIEQEADHNKTGFLD 329
Query: 598 HFXXXXXXXXXXXXXXDAAGTDADAVSKIERFLIQPRVEDAVLG-----RRRADKAIAWR 652
F DAA A + + +Q + D V G R R + WR
Sbjct: 330 RFTEALFYYSAVFDSLDAASASGGAGNAMAEAYLQREICDIVCGEGAARRERHEPLSRWR 389
Query: 653 TVLTSAGFAPQPLSNLAEAQADCLLKRVQVRGFHVEKRGAGLALYWQRGELVSVSAW 709
LT AG + PL + A QA L+ G VE+ L L W L S SAW
Sbjct: 390 DRLTRAGLSAVPLGSNALRQARMLVGLFSGEGHSVEEADGCLTLGWHGRPLFSASAW 446
>Os03g0263300
Length = 575
Score = 87.4 bits (215), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 78/313 (24%), Positives = 130/313 (41%), Gaps = 32/313 (10%)
Query: 424 LTAYKSFSDLSPVLQFANFTVTQALLDEIASTTASCIRVIDFDLGVGGQWASFLQELAHR 483
LTA++ D+SP ++F +FT QA+L+ ++ + ++D+D+ G QWAS +Q + R
Sbjct: 218 LTAFQMLQDMSPYMKFGHFTANQAILEAVSGDRR--VHIVDYDIAEGIQWASLMQAMTSR 275
Query: 484 CGSGGVSLPMLKLTAFVSAASHHPLELHLTQDNLSQFAADLGIPFEFNAINLDA---FDP 540
+ GV P L++TA + + LS FAA +G PF F LD+ F P
Sbjct: 276 --ADGVPAPHLRITAVSRSGGGGARAVQEAGRRLSAFAASIGQPFSFGQCRLDSDERFRP 333
Query: 541 MELIAPTADEVVAVSLPVGCSARTPL-------PAMLQLVKQLAPKIVVAIDYGSDRSD- 592
+ + +VA + +A T + + L + L K+V ++ +
Sbjct: 334 ATVRMVKGEALVANCVLHQAAATTTIRRPTGSVASFLSGMAALGAKLVTVVEEEGEAEKD 393
Query: 593 -----------LPFSQHFXXXXXXXXXXXXXXDAAG-TDADAVSKIERFLIQPRVEDAVL 640
F + F +A T + +ER ++ P + AV
Sbjct: 394 DDGDSAGDAAAGGFVRQFMEELHRYSAVWDSLEAGFPTQSRVRGLVERVILAPNIAGAVS 453
Query: 641 GRRR---ADKAIAWRTVLTSAGFAPQPLSNLAEAQADCLLKRVQVRGFHVEKRGAG-LAL 696
R + W + +GF PLS +QA LL G+ VE+ G + L
Sbjct: 454 RAYRGVDGEGRCGWGQWMRGSGFTAVPLSCFNHSQARLLLGLFN-DGYTVEETGPNKIVL 512
Query: 697 YWQRGELVSVSAW 709
W+ L+S S W
Sbjct: 513 GWKARRLMSASVW 525
>Os03g0193000 GRAS transcription factor domain containing protein
Length = 535
Score = 86.3 bits (212), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 75/296 (25%), Positives = 124/296 (41%), Gaps = 24/296 (8%)
Query: 432 DLSPVLQFANFTVTQALLDEIASTTASCIRVIDFDLGVGGQWASFLQELAHRCGSGGVSL 491
++ P +F + A+ + + + + +IDF + G QWA+ +Q LA R G
Sbjct: 247 EICPFFKFGYMSANGAIAEAVKGE--NFVHIIDFQIAQGSQWATMIQALAARPGGP---- 300
Query: 492 PMLKLTAFVSAASHHPL--ELHLTQDNLSQFAADLGIPFEFNAINLDAFDPM-ELIAPTA 548
P L++T + S H L + L A G+PFEFNA+ + + M E + +
Sbjct: 301 PYLRITGIDDSNSAHARGGGLDIVGRRLFNIAQSCGLPFEFNAVPAASHEVMLEHLDIRS 360
Query: 549 DEVVAVSLPV--------GCSARTPLPAMLQLVKQLAPKIVVAIDYGSDRSDLPFSQHFX 600
EV+ V+ +L++VK L+P++V ++ ++ + PF +
Sbjct: 361 GEVIVVNFAYQLHHTPDESVGIENHRDRILRMVKGLSPRVVTLVEQEANTNTAPFFNRYL 420
Query: 601 XXXXXXXXXXXXXDAAG--TDADAVSKIERFLIQPRVE-DAVLGRRRADKAI---AWRTV 654
D A D +S + + + V A G R ++ WR
Sbjct: 421 ETLDYYTAMFEAIDVACPRDDKKRISTEQHCVARDIVNLIACEGAERVERHEPFGKWRAR 480
Query: 655 LTSAGFAPQPLSNLAEAQADCLLKRVQVRGFHVEKRGAGLALYWQRGELVSVSAWR 710
L+ AGF P PLS L LL + +E+R L L W+ +LV SAWR
Sbjct: 481 LSMAGFRPYPLSALVNNTIKKLLDSYHSY-YKLEERDGALYLGWKNRKLVVSSAWR 535
>Os11g0124300 Similar to SCARECROW
Length = 651
Score = 83.6 bits (205), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 90/299 (30%), Positives = 131/299 (43%), Gaps = 31/299 (10%)
Query: 426 AYKSFSDLSPVLQFANFTVTQALLDEIASTTASCIRVIDFDLGVGGQWASFLQELAHRCG 485
A++ F+ +SP ++F++FT QA+ + A + +ID D+ G QW LA R G
Sbjct: 363 AFQVFNGISPFVKFSHFTANQAIQE--AFEREERVHIIDLDIMQGLQWPGLFHILASRPG 420
Query: 486 SGGVSLPMLKLTAFVSAASHHPLELHLTQDNLSQFAADLGIPFEFNAINLDA--FDPMEL 543
P ++LT AS LE T LS FA LG+PFEF + A DP E
Sbjct: 421 GP----PRVRLTGL--GASMEALEA--TGKRLSDFADTLGLPFEFCPVADKAGNLDP-EK 471
Query: 544 IAPTADEVVAVSL-------PVGCSARTPLPAMLQLVKQLAPKIVVAIDYGSDRSDLPFS 596
+ T E VAV G + T L L+++LAPK+V ++ S F
Sbjct: 472 LGVTRREAVAVHWLRHSLYDVTGSDSNT-----LWLIQRLAPKVVTMVEQDLSHSG-SFL 525
Query: 597 QHFXXXXXXXXXXXXXXDAA-GTDADAVSKIERFLIQPRVED--AVLGRRRAD--KAIAW 651
F DA+ D+ +E+ L+ + + AV G R K +W
Sbjct: 526 ARFVEAIHYYSALFDSLDASYSEDSPERHVVEQQLLSREIRNVLAVGGPARTGDVKFGSW 585
Query: 652 RTVLTSAGFAPQPLSNLAEAQADCLLKRVQVRGFHVEKRGAGLALYWQRGELVSVSAWR 710
R L +GF L+ A AQA LL G+ + + L L W+ L++ SAWR
Sbjct: 586 REKLAQSGFRVSSLAGSAAAQAVLLLGMFPSDGYTLIEENGALKLGWKDLCLLTASAWR 644
>Os07g0583600 Chitin-inducible gibberellin-responsive protein
Length = 544
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 91/368 (24%), Positives = 146/368 (39%), Gaps = 26/368 (7%)
Query: 361 KATEVGNSIGAREILARLNQQLPPIGKPFLRSASYXXXXXXXXXXXXXXXXTR-LTSPLD 419
+A E NS ++ L + + G+P R +Y + L
Sbjct: 183 RAVEEKNSFAIDMMIPELRKIVSVSGEPLERLGAYMVEGLVARLASSGISIYKALKCKEP 242
Query: 420 VALKLTAYKSF-SDLSPVLQFANFTVTQALLDEIASTTASCIRVIDFDLGVGGQWASFLQ 478
+ L +Y F + P +F + A+ + + I +IDF + G QW S LQ
Sbjct: 243 KSSDLLSYMHFLYEACPYFKFGYMSANGAIAEAVKGEDR--IHIIDFHISQGAQWISLLQ 300
Query: 479 ELAHRCGSGGVSLPMLKLTAFVSAASHHPL--ELHLTQDNLSQFAADLGIPFEFN--AIN 534
LA R G P +++T + S + L L LS A+ +PFEF+ AI+
Sbjct: 301 ALAARPGGP----PTVRITGIDDSVSAYARGGGLELVGRRLSHIASLCKVPFEFHPLAIS 356
Query: 535 LDAFDPMEL-IAPTADEVVAVSLPV------GCSARTPLPAMLQLVKQLAPKIVVAIDYG 587
+ L + P V +L + S +L++VK L+PK++ ++
Sbjct: 357 GSKVEAAHLGVIPGEALAVNFTLELHHIPDESVSTANHRDRLLRMVKSLSPKVLTLVEME 416
Query: 588 SDRSDLPFSQHFXXXXXXXXXXXXXXDAA--GTDADAVSKIERFLIQPRVE-DAVLGRRR 644
S+ + PF Q F D D + ++ + L + V A G R
Sbjct: 417 SNTNTAPFPQRFAETLDYYTAIFESIDLTLPRDDRERINMEQHCLAREIVNLIACEGEER 476
Query: 645 ADKAI---AWRTVLTSAGFAPQPLSNLAEAQADCLLKRVQVRGFHVEKRGAGLALYWQRG 701
A++ W+ LT AGF P PLS+L A LL+ + + +R L L W+
Sbjct: 477 AERYEPFGKWKARLTMAGFRPSPLSSLVNATIRTLLQSYS-DNYKLAERDGALYLGWKSR 535
Query: 702 ELVSVSAW 709
LV SAW
Sbjct: 536 PLVVSSAW 543
>Os05g0574900 GRAS transcription factor domain containing protein
Length = 500
Score = 80.5 bits (197), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 81/311 (26%), Positives = 119/311 (38%), Gaps = 35/311 (11%)
Query: 427 YKSFSDLSPVLQFANFTVTQALLDEIASTTASCIRVIDFDLGVGGQWASFLQELAHRCGS 486
++ F + P L+FA+ QA+L+ A + + VIDF L G QW S +Q LA R G
Sbjct: 154 FRGFYEAGPYLKFAHLAANQAILE--AFEGCNSVHVIDFALTDGIQWPSLIQALAVRPGG 211
Query: 487 GGVSLPMLKLTAFVSAASHHPLELHLTQDNLSQFAADLGIPFEFNAINLDAFDP----ME 542
P L++T A+ + EL L++FA +PF F I D D M
Sbjct: 212 ----PPFLRITGIGPHAAGNRDELRDVGLRLAEFARSCSVPFAFRGIAADQLDGLRPWMF 267
Query: 543 LIAPTADEVVAVS-------------LPVGCSARTPLPAMLQLVKQLAPKIVVAIDYGSD 589
+AP E VA++ S P+ +L V + P++ ++ +D
Sbjct: 268 QVAP--GEAVAINSVLQLHRLLVDQDAAAAASFPAPIDGVLDWVASMNPRVFTVVEQEAD 325
Query: 590 RSDLPFSQHFXXXXXXXXXXXXXXDA----AGTDADAVSKIERFLIQPRVEDAVLGR--- 642
+ + F +A G D E +L Q + D V
Sbjct: 326 HNKSSLLERFTNSLFYYASMFDSLEAISRHGGGDGAGNPLAEAYL-QGEIADIVSREGSS 384
Query: 643 --RRADKAIAWRTVLTSAGFAPQPLSNLAEAQADCLLKRVQVRGFHVEKRGAGLALYWQR 700
R ++ W L G PL QA L+ GF V++ G L L W
Sbjct: 385 RVERHEQMPRWVERLRRGGMTQLPLGATGLWQAAMQLREFSGAGFGVQENGGFLTLTWHS 444
Query: 701 GELVSVSAWRC 711
L S SAWR
Sbjct: 445 QRLYSASAWRA 455
>Os12g0122000 SCARECROW
Length = 660
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 90/299 (30%), Positives = 131/299 (43%), Gaps = 31/299 (10%)
Query: 426 AYKSFSDLSPVLQFANFTVTQALLDEIASTTASCIRVIDFDLGVGGQWASFLQELAHRCG 485
A++ F+ +SP ++F++FT QA+ + A + +ID D+ G QW LA R G
Sbjct: 372 AFQVFNGISPFVKFSHFTANQAIQE--AFEREERVHIIDLDIMQGLQWPGLFHILASRPG 429
Query: 486 SGGVSLPMLKLTAFVSAASHHPLELHLTQDNLSQFAADLGIPFEFNAINLDA--FDPMEL 543
P ++LT AS LE T LS FA LG+PFEF + A DP E
Sbjct: 430 GP----PRVRLTGL--GASMEALEA--TGKRLSDFADTLGLPFEFCPVADKAGNLDP-EK 480
Query: 544 IAPTADEVVAVSL-------PVGCSARTPLPAMLQLVKQLAPKIVVAIDYGSDRSDLPFS 596
+ T E VAV G + T L L+++LAPK+V ++ S F
Sbjct: 481 LGVTRREAVAVHWLRHSLYDVTGSDSNT-----LWLIQRLAPKVVTMVEQDLSHSG-SFL 534
Query: 597 QHFXXXXXXXXXXXXXXDAA-GTDADAVSKIERFLIQPRVED--AVLGRRRAD--KAIAW 651
F DA+ D+ +E+ L+ + + AV G R K +W
Sbjct: 535 ARFVEAIHYYSALFDSLDASYSEDSPERHVVEQQLLSREIRNVLAVGGPARTGDVKFGSW 594
Query: 652 RTVLTSAGFAPQPLSNLAEAQADCLLKRVQVRGFHVEKRGAGLALYWQRGELVSVSAWR 710
R L +GF L+ A AQA LL G+ + + L L W+ L++ SAWR
Sbjct: 595 REKLAQSGFRVSSLAGSAAAQAALLLGMFPSDGYTLIEENGALKLGWKDLCLLTASAWR 653
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.134 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 17,945,154
Number of extensions: 604958
Number of successful extensions: 1242
Number of sequences better than 1.0e-10: 15
Number of HSP's gapped: 1196
Number of HSP's successfully gapped: 15
Length of query: 711
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 603
Effective length of database: 11,396,689
Effective search space: 6872203467
Effective search space used: 6872203467
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 160 (66.2 bits)