Os03g0723000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : GRAS transcription factor domain containing protein.
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Os03g0723000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : GRAS transcription factor domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 73.63 | 0.403 | 8.34 | 1 | 0.589 | 2.59 | -0.0635 | 3.22 | 0.36 | 8.69 | 8.185 | 511 | -- | -- |
| 73.9 | 0.4 | 8.32 | 0.97 | 0.581 | 1.95 | -0.0169 | -- | 0.371 | 8.66 | 8.026 | 472 | -- | -- |
| 73.56 | 0.399 | 8.34 | 1.03 | 0.596 | 2.75 | -- | 4.09 | 0.366 | 8.65 | 7.8 | 511 | -- | -- |
| 73.86 | 0.4 | 8.32 | 0.972 | 0.589 | 1.9 | -- | -- | 0.365 | 8.6 | 8 | 491 | -- | -- |
| 92.91 | 0.449 | 8.36 | 0.99 | -- | 2.72 | -- | 4.55 | 0.364 | -- | 8.043 | 458 | -- | -- |
| 85.93 | 0.435 | 8.34 | 0.817 | 0.524 | -- | 0.158 | -- | 0.305 | 8.71 | -- | -- | -- | -- |
| 86 | 0.434 | 8.34 | 0.823 | 0.522 | -- | -- | -- | 0.305 | 8.83 | -- | -- | -- | -- |
| 92.89 | 0.449 | 8.34 | 0.958 | -- | 1.64 | -- | -- | 0.363 | -- | 8.214 | 484 | -- | -- |
| 97.33 | 0.459 | 8.34 | -- | 0.563 | 1.62 | -- | -- | 0.273 | 8.54 | 8.637 | 459 | -- | -- |
| 101.5 | 0.471 | 8.35 | 0.823 | -- | -- | -- | -- | 0.309 | -- | -- | -- | -- | -- |
| 103.84 | 0.477 | 8.36 | -- | 0.524 | -- | -- | -- | 0.214 | 8.71 | -- | -- | -- | -- |
| 113.65 | 0.497 | 8.37 | -- | -- | 1.32 | -- | -- | 0.242 | -- | 10.4 | 466 | -- | -- |
| 119.37 | 0.51 | 8.37 | -- | -- | -- | -- | -- | 0.218 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 69.75 | wind | 9 | 270 | < th | dose independent | sin | 13 | NA |
| 5 | 70.37 | wind | 7 | 270 | < th | dose independent | rect. | 13 | 13 |
| 7 | 70.90 | wind | 9 | 10 | < th | dose independent | sin | 13 | NA |
| 9 | 71.10 | wind | 9 | 720 | < th | dose independent | rect. | 5 | 23 |
| 10 | 71.15 | wind | 9 | 720 | < th | dose independent | rect. | 5 | 14 |
| 12 | 71.37 | wind | 9 | 720 | < th | dose independent | rect. | 9 | 9 |
| 14 | 71.51 | wind | 9 | 270 | > th | dose dependent | sin | 13 | NA |
| 19 | 71.75 | wind | 9 | 720 | < th | dose independent | rect. | 13 | 15 |
| 20 | 71.85 | wind | 9 | 270 | > th | dose independent | sin | 13 | NA |
| 23 | 72.07 | wind | 7 | 270 | > th | dose dependent | rect. | 14 | 15 |
| 28 | 72.10 | wind | 7 | 270 | > th | dose dependent | rect. | 14 | 11 |
| 30 | 72.11 | wind | 7 | 720 | < th | dose independent | rect. | 7 | 11 |
| 32 | 72.12 | wind | 7 | 270 | > th | dose dependent | rect. | 14 | 9 |
| 51 | 72.20 | wind | 7 | 720 | < th | dose independent | rect. | 6 | 21 |
| 94 | 72.44 | wind | 9 | 720 | < th | dose independent | sin | 23 | NA |
| 100 | 72.48 | wind | 9 | 270 | > th | dose independent | rect. | 14 | 20 |
| 105 | 72.53 | wind | 9 | 270 | > th | dose independent | rect. | 14 | 12 |
| 124 | 72.57 | wind | 9 | 270 | > th | dose independent | rect. | 14 | 9 |
| 164 | 72.78 | wind | 9 | 270 | > th | dose independent | rect. | 17 | 5 |
| 165 | 72.78 | wind | 9 | 270 | > th | dose dependent | rect. | 17 | 5 |
| 168 | 72.81 | wind | 9 | 270 | > th | dose dependent | rect. | 17 | 9 |
| 176 | 72.83 | wind | 9 | 720 | < th | dose independent | rect. | 11 | 16 |
| 188 | 72.95 | wind | 7 | 720 | < th | dose independent | rect. | 23 | 19 |
| 192 | 72.98 | wind | 9 | 720 | < th | dose independent | rect. | 1 | 17 |
| 193 | 73.00 | wind | 9 | 270 | > th | dose independent | rect. | 17 | 17 |
| 236 | 73.18 | wind | 9 | 720 | < th | dose independent | rect. | 20 | 23 |
| 245 | 73.26 | wind | 9 | 720 | < th | dose independent | rect. | 15 | 17 |
| 277 | 73.47 | wind | 9 | 10 | > th | dose independent | sin | 13 | NA |
| 300 | 73.57 | wind | 9 | 720 | > th | dose independent | rect. | 12 | 4 |
| 308 | 73.63 | wind | 7 | 720 | < th | dose independent | rect. | 15 | 3 |
| 326 | 73.67 | wind | 9 | 720 | > th | dose dependent | rect. | 12 | 4 |
| 358 | 73.83 | wind | 9 | 720 | > th | dose dependent | rect. | 13 | 2 |
| 386 | 73.91 | wind | 9 | 10 | > th | dose independent | rect. | 15 | 7 |
| 421 | 73.95 | wind | 9 | 720 | > th | dose dependent | rect. | 11 | 6 |
| 466 | 74.09 | wind | 7 | 90 | < th | dose dependent | rect. | 16 | 12 |
| 483 | 74.14 | wind | 9 | 720 | < th | dose independent | rect. | 13 | 23 |
| 554 | 74.41 | wind | 7 | 10 | > th | dose dependent | sin | 12 | NA |
| 572 | 74.49 | wind | 9 | 10 | > th | dose independent | rect. | 17 | 5 |
| 606 | 74.51 | wind | 7 | 720 | < th | dose independent | rect. | 13 | 6 |
| 626 | 74.61 | wind | 7 | 10 | > th | dose dependent | rect. | 17 | 10 |
| 646 | 74.66 | wind | 7 | 10 | > th | dose dependent | rect. | 17 | 5 |
| 702 | 74.77 | wind | 9 | 720 | > th | dose independent | sin | 0 | NA |
| 791 | 74.91 | wind | 9 | 720 | > th | dose dependent | sin | 1 | NA |
| 950 | 75.13 | temperature | 10 | 270 | > th | dose dependent | rect. | 23 | 2 |