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Os11g0124300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to SCARECROW.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.57 (0.0284) R2 : 0.764
β1 : 2.91 (0.107) R2dD : 0.427 R2D : 0.28
β2 : 1.74 (0.0749) R2dC : 0.294 R2C : 0.36
β3 : 1.38 (0.131) R2dE : 0.0748 R2E : -0.00542
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.66 (0.0652) R2dN8 : 0.0837 R2N8 : -0.0433
σ : 0.521
deviance : 125.14
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_____
C
peak time of C : 5.07
E
wheather : temperature
threshold : 25.38
memory length : 56
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
120.82 0.516 6.55 3.11 1.74 1.21 0.272 -1.67 0.697 5.09 25.7 17 -- --
125.37 0.521 6.55 2.93 1.76 1.4 0.00554 -- 0.663 5.07 25.39 54 -- --
120.83 0.512 6.55 3.09 1.73 1.22 -- -1.58 0.691 5.05 25.7 53 -- --
125.14 0.521 6.57 2.91 1.74 1.38 -- -- 0.66 5.07 25.38 56 -- --
227.58 0.703 6.51 3.49 -- 2.47 -- -1.68 0.982 -- 29.58 156 -- --
151.78 0.578 6.64 2.54 1.93 -- -0.165 -- 0.357 4.67 -- -- -- --
151.85 0.577 6.64 2.54 1.93 -- -- -- 0.358 4.67 -- -- -- --
232.22 0.71 6.55 3.2 -- 2.47 -- -- 0.887 -- 29.4 151 -- --
252.68 0.74 6.73 -- 1.67 -1.76 -- -- -0.398 4.97 22.73 18356 -- --
348.93 0.873 6.66 2.62 -- -- -- -- 0.409 -- -- -- -- --
322.22 0.84 6.7 -- 1.97 -- -- -- 0.0751 4.64 -- -- -- --
381.47 0.91 6.85 -- -- -1.96 -- -- -0.467 -- 36.48 47520 -- --
529.43 1.07 6.72 -- -- -- -- -- 0.118 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 119.32 temperature 20.0 270 > th dose independent rect. 5 21
3 119.58 temperature 20.0 90 > th dose independent rect. 5 23
4 119.66 temperature 20.0 10 > th dose independent rect. 6 22
5 119.67 temperature 25.0 90 < th dose dependent rect. 23 23
11 120.35 temperature 25.0 10 < th dose dependent rect. 1 23
12 120.56 temperature 25.0 90 < th dose dependent rect. 11 23
13 120.69 humidity 70.0 43200 > th dose independent rect. 21 19
14 120.70 temperature 20.0 270 > th dose independent rect. 20 16
19 120.79 temperature 15.0 90 > th dose dependent rect. 6 21
29 121.13 temperature 25.0 10 < th dose dependent rect. 13 23
30 121.16 temperature 25.0 10 < th dose dependent rect. 23 23
32 121.18 temperature 15.0 10 > th dose dependent rect. 6 22
33 121.18 temperature 25.0 10 < th dose dependent rect. 3 23
41 121.28 temperature 25.0 10 < th dose dependent no NA NA
43 121.30 wind 1.0 14400 > th dose independent rect. 2 1
46 121.31 temperature 25.0 10 < th dose dependent rect. 9 23
51 121.34 temperature 25.0 10 < th dose dependent rect. 15 23
52 121.35 temperature 25.0 10 < th dose dependent rect. 11 23
57 121.37 temperature 25.0 10 < th dose dependent rect. 17 23
59 121.40 temperature 25.0 30 < th dose dependent rect. 19 23
62 121.44 temperature 25.0 90 < th dose dependent rect. 21 23
67 121.53 temperature 25.0 30 < th dose dependent rect. 7 23
68 121.54 humidity 70.0 43200 > th dose independent rect. 10 20
76 121.63 humidity 90.0 43200 < th dose dependent rect. 11 4
83 121.70 wind 1.0 43200 < th dose independent rect. 2 1
107 121.90 humidity 70.0 43200 < th dose independent rect. 21 19
109 121.92 temperature 20.0 43200 < th dose independent rect. 6 3
131 122.04 temperature 20.0 43200 > th dose independent rect. 6 4
144 122.09 temperature 25.0 10 < th dose dependent rect. 5 23
147 122.11 temperature 20.0 43200 > th dose independent rect. 7 1
176 122.29 humidity 90.0 43200 < th dose dependent rect. 20 20
236 122.48 temperature 20.0 43200 < th dose independent rect. 4 12
258 122.53 humidity 70.0 43200 < th dose independent rect. 12 18
274 122.58 wind 3.0 43200 > th dose independent rect. 16 1
297 122.63 temperature 20.0 270 > th dose independent rect. 19 20
307 122.66 humidity 80.0 43200 < th dose independent sin 5 NA
327 122.69 humidity 90.0 43200 < th dose dependent rect. 10 18
328 122.69 humidity 90.0 43200 < th dose dependent rect. 8 20
332 122.70 humidity 50.0 43200 > th dose dependent rect. 20 1
358 122.74 temperature 20.0 43200 < th dose independent sin 2 NA
359 122.74 wind 3.0 43200 < th dose independent rect. 16 1
367 122.76 temperature 20.0 43200 > th dose independent sin 2 NA
368 122.76 humidity 70.0 43200 > th dose independent no NA NA
412 122.82 wind 5.0 43200 < th dose dependent rect. 16 1
416 122.83 wind 3.0 43200 > th dose independent rect. 14 3
426 122.84 radiation 30.0 43200 < th dose independent rect. 4 3
454 122.87 humidity 70.0 43200 > th dose independent rect. 4 23
477 122.91 precipitation 0.1 43200 > th dose independent rect. 23 1
482 122.91 precipitation 0.1 43200 > th dose dependent rect. 23 1
493 122.93 humidity 70.0 43200 > th dose independent sin 16 NA
494 122.93 radiation 1.0 43200 > th dose independent rect. 6 5
495 122.93 humidity 90.0 14400 < th dose independent rect. 23 8
503 122.94 wind 3.0 43200 < th dose independent rect. 14 3
504 122.94 radiation 1.0 43200 < th dose independent rect. 6 5
509 122.95 humidity 90.0 14400 < th dose independent rect. 1 6
527 122.98 temperature 20.0 90 < th dose independent rect. 23 22
548 123.01 precipitation 0.1 43200 < th dose independent rect. 23 1
549 123.01 precipitation 0.1 43200 < th dose independent rect. 5 2
552 123.01 precipitation 0.1 43200 < th dose dependent rect. 23 1
553 123.01 precipitation 0.1 43200 < th dose dependent rect. 5 2
569 123.03 humidity 90.0 43200 < th dose dependent no NA NA
572 123.03 humidity 90.0 43200 < th dose dependent rect. 2 23
578 123.04 temperature 20.0 90 > th dose independent rect. 20 23
625 123.10 temperature 25.0 43200 < th dose dependent rect. 7 2
642 123.12 humidity 90.0 43200 < th dose dependent sin 3 NA
644 123.12 radiation 1.0 43200 < th dose dependent rect. 6 2
657 123.14 humidity 90.0 14400 < th dose independent rect. 5 1
682 123.19 temperature 20.0 43200 > th dose independent rect. 17 1
705 123.22 humidity 70.0 43200 > th dose independent sin 4 NA
717 123.24 humidity 80.0 43200 < th dose independent rect. 23 14
719 123.24 humidity 50.0 43200 > th dose dependent rect. 19 20
747 123.27 humidity 80.0 43200 < th dose independent rect. 2 10
790 123.32 radiation 1.0 43200 < th dose independent rect. 7 2
811 123.34 radiation 1.0 43200 > th dose independent rect. 7 2
829 123.36 temperature 20.0 10 > th dose independent rect. 23 15
833 123.36 humidity 50.0 43200 > th dose dependent rect. 19 3
837 123.37 precipitation 0.1 43200 > th dose independent rect. 5 2
866 123.40 humidity 50.0 43200 > th dose independent rect. 11 1
876 123.41 temperature 20.0 43200 < th dose independent rect. 17 1
880 123.41 precipitation 0.1 43200 > th dose dependent rect. 5 2
905 123.44 temperature 25.0 43200 < th dose dependent sin 4 NA
958 123.48 humidity 90.0 43200 < th dose dependent rect. 20 1